Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47213 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47207 * 308.04663 * 3 2 1 5 5 C 1.36740 * 119.99896 * 263.75974 * 4 3 2 6 6 H 1.08003 * 120.00145 * 201.38224 * 5 4 3 7 7 C 1.39069 * 120.00266 * 21.38539 * 5 4 3 8 8 N 1.31368 * 120.00037 * 5.92762 * 7 5 4 9 9 Si 1.86797 * 120.00415 * 185.92988 * 7 5 4 10 10 H 1.48509 * 109.46971 * 59.99673 * 9 7 5 11 11 H 1.48501 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47263 * 299.99884 * 9 7 5 13 13 C 1.34775 * 120.00261 * 83.76171 * 4 3 2 14 14 O 1.21838 * 120.00626 * 180.02562 * 13 4 3 15 15 C 1.41342 * 119.99698 * 359.97438 * 13 4 3 16 16 C 1.35786 * 119.99985 * 187.66112 * 15 13 4 17 17 C 1.41517 * 120.00156 * 20.23469 * 16 15 13 18 18 C 1.38029 * 126.11105 * 202.95801 * 17 16 15 19 19 C 1.40287 * 106.52550 * 179.90969 * 18 17 16 20 20 C 1.35175 * 107.21376 * 0.35401 * 19 18 17 21 21 C 1.50698 * 125.48079 * 179.77941 * 20 19 18 22 22 C 1.53000 * 109.47452 * 89.97296 * 21 20 19 23 23 O 1.34042 * 109.04220 * 359.77673 * 20 19 18 24 24 H 4.40640 * 5.51435 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.46857 * 188.04635 * 3 2 1 26 26 H 1.09002 * 109.46852 * 68.04901 * 3 2 1 27 27 H 0.96993 * 120.00083 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.00117 * 7.39534 * 15 13 4 29 29 H 1.08002 * 120.00323 * 200.24112 * 16 15 13 30 30 H 1.08003 * 126.74081 * 0.02562 * 18 17 16 31 31 H 1.07998 * 126.39597 * 180.13036 * 19 18 17 32 32 H 1.09008 * 109.47304 * 209.97209 * 21 20 19 33 33 H 1.08998 * 109.47529 * 329.97141 * 21 20 19 34 34 H 1.08994 * 109.47188 * 179.97438 * 22 21 20 35 35 H 1.08998 * 109.47005 * 300.00180 * 22 21 20 36 36 H 1.09002 * 109.46841 * 59.99950 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8503 1.0877 5 6 3.4838 -0.2939 2.2870 6 1 4.1484 -0.8224 2.9545 7 6 2.9830 0.9524 2.6474 8 7 2.0853 1.5431 1.8917 9 14 3.5868 1.7867 4.2058 10 1 5.0534 2.0017 4.1159 11 1 2.9038 3.0959 4.3630 12 1 3.2836 0.9259 5.3774 13 6 3.2405 -2.1816 0.9063 14 8 3.6465 -2.8895 1.8110 15 6 2.8792 -2.7568 -0.3333 16 6 2.8363 -4.1072 -0.4683 17 6 2.7252 -4.9298 0.6779 18 6 3.1039 -6.2540 0.7687 19 6 2.8154 -6.6626 2.0793 20 6 2.2775 -5.6009 2.7201 21 6 1.8122 -5.5880 4.1534 22 6 2.9710 -5.1731 5.0622 23 8 2.2246 -4.5613 1.8756 24 1 -1.0498 0.0000 0.0004 25 1 3.0089 1.0184 0.1438 26 1 3.0096 -0.3833 -0.9532 27 1 1.7363 2.4125 2.1429 28 1 2.6332 -2.1222 -1.1718 29 1 2.8870 -4.5537 -1.4504 30 1 3.5390 -6.8567 -0.0149 31 1 2.9873 -7.6435 2.4973 32 1 0.9924 -4.8780 4.2629 33 1 1.4698 -6.5843 4.4332 34 1 2.6343 -5.1634 6.0988 35 1 3.7908 -5.8831 4.9526 36 1 3.3134 -4.1768 4.7823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490971068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = 56.998245 kcal Electronic energy + Delta-G solvation = -20967.520855 eV Core-core repulsion = 17806.997100 eV Total energy + Delta-G solvation = -3160.523755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.24647 -40.59526 -37.22989 -35.33843 -34.51542 -33.95012 -33.12961 -33.02608 -29.29858 -28.22959 -26.82990 -25.08489 -23.26178 -22.54178 -21.24345 -19.92422 -19.62394 -18.63308 -18.24995 -17.21962 -16.70663 -16.42711 -15.99595 -15.83402 -15.37001 -15.09719 -14.65908 -14.27308 -14.15972 -13.94864 -13.79019 -13.47686 -13.29407 -13.26933 -12.92191 -12.79210 -12.52679 -12.40908 -12.17611 -11.93654 -11.35611 -11.07995 -10.90669 -10.62792 -10.47767 -10.27948 -9.76259 -8.59423 -8.30073 -5.92406 -0.32220 1.31331 1.37420 1.42914 1.47588 1.89419 2.08836 2.27945 2.35014 2.39007 2.67094 3.20586 3.37466 3.83376 3.89340 4.01729 4.16698 4.21271 4.30645 4.33798 4.52390 4.60288 4.77372 4.84145 4.88704 4.92914 5.01607 5.08212 5.19291 5.27589 5.33617 5.40054 5.43909 5.53050 5.83707 6.10395 6.49452 6.53554 7.12526 7.17518 7.43296 8.07693 8.64801 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.006860 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.900891 B = 4080.616310 C = 5083.471455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.144 4.144 3 C 0.229 3.771 4 N -0.447 5.447 5 C -0.331 4.331 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.879 5.879 9 Si 0.988 3.012 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.458 3.542 14 O -0.610 6.610 15 C -0.206 4.206 16 C -0.025 4.025 17 C -0.013 4.013 18 C -0.186 4.186 19 C -0.224 4.224 20 C -0.024 4.024 21 C -0.043 4.043 22 C -0.142 4.142 23 O -0.160 6.160 24 H 0.232 0.768 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.272 0.728 28 H 0.151 0.849 29 H 0.198 0.802 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -10.361 -3.385 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.146 4.146 3 C 0.107 3.893 4 N -0.164 5.164 5 C -0.460 4.460 6 H 0.090 0.910 7 C -0.205 4.205 8 N -0.517 5.517 9 Si 0.812 3.188 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.253 3.747 14 O -0.499 6.499 15 C -0.227 4.227 16 C -0.045 4.045 17 C -0.063 4.063 18 C -0.206 4.206 19 C -0.243 4.243 20 C -0.077 4.077 21 C -0.080 4.080 22 C -0.199 4.199 23 O -0.055 6.055 24 H 0.248 0.752 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.168 0.832 29 H 0.215 0.785 30 H 0.197 0.803 31 H 0.192 0.808 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.456 -10.130 -2.864 10.627 hybrid contribution 0.108 0.896 0.809 1.213 sum -1.348 -9.233 -2.054 9.555 Atomic orbital electron populations 1.25125 0.96390 1.03221 1.02924 1.23553 0.95056 0.98043 0.97950 1.18490 0.84462 0.97489 0.88830 1.43826 1.55022 1.05378 1.12196 1.19537 1.27443 1.02393 0.96596 0.90995 1.26063 0.95313 0.97415 1.01755 1.70043 1.26645 1.16478 1.38532 0.85078 0.78746 0.77322 0.77669 1.19107 1.19351 1.20781 1.17536 0.85038 0.82193 0.89962 1.90664 1.52905 1.60379 1.45920 1.22424 1.05023 0.96889 0.98337 1.21047 0.95643 0.91672 0.96183 1.20286 1.05656 0.94636 0.85729 1.22546 1.05120 0.93752 0.99136 1.21681 1.07157 1.00553 0.94884 1.23369 1.03700 0.86327 0.94323 1.20220 0.98438 1.04595 0.84748 1.21699 0.98085 1.00385 0.99719 1.84356 1.63141 1.37603 1.20362 0.75186 0.87731 0.88914 0.91740 0.83184 0.78537 0.80298 0.80850 0.91667 0.85499 0.89414 0.91637 0.96105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.75 19.25 74.32 1.43 -9.31 16 2 C -0.14 -6.63 11.34 31.13 0.35 -6.28 16 3 C 0.23 10.55 4.79 84.58 0.41 10.96 16 4 N -0.45 -23.93 2.60 -655.78 -1.70 -25.64 16 5 C -0.33 -19.25 9.33 84.13 0.78 -18.46 16 6 H 0.07 4.48 7.36 -2.91 -0.02 4.46 16 7 C 0.00 -0.18 5.21 84.96 0.44 0.27 16 8 N -0.88 -46.53 8.86 21.69 0.19 -46.34 16 9 Si 0.99 43.40 29.56 68.60 2.03 45.42 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 C 0.46 23.88 6.92 85.01 0.59 24.47 16 14 O -0.61 -35.79 12.43 18.90 0.23 -35.56 16 15 C -0.21 -8.29 8.93 22.46 0.20 -8.09 16 16 C -0.02 -0.85 9.89 22.51 0.22 -0.63 16 17 C -0.01 -0.52 5.67 23.03 0.13 -0.39 16 18 C -0.19 -5.91 10.90 22.72 0.25 -5.67 16 19 C -0.22 -7.00 10.76 22.06 0.24 -6.76 16 20 C -0.02 -0.92 6.56 24.98 0.16 -0.75 16 21 C -0.04 -1.29 6.46 29.85 0.19 -1.09 16 22 C -0.14 -4.30 9.89 71.98 0.71 -3.58 16 23 O -0.16 -7.42 7.53 17.29 0.13 -7.29 16 24 H 0.23 7.53 7.80 -4.43 -0.03 7.49 16 25 H 0.10 5.12 6.19 -2.39 -0.01 5.10 16 26 H 0.09 3.49 6.36 -2.39 -0.02 3.47 16 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.15 5.06 6.11 -2.91 -0.02 5.04 16 29 H 0.20 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -75.55 315.20 8.08 -67.48 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.08 Total: 27.25 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 6.11 Total: -25.33 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -1.51 Total: -71.97 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: 0.37 Total: -42.85 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -75.55 8.08 -67.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.477 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds