Wall clock time and date at job start Mon Mar 30 2020 01:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46798 * 178.85088 * 3 2 1 5 5 C 1.37098 * 119.99717 * 263.92616 * 4 3 2 6 6 H 1.08003 * 119.99759 * 199.76063 * 5 4 3 7 7 C 1.38948 * 120.00285 * 19.75274 * 5 4 3 8 8 N 1.31417 * 119.99543 * 21.75179 * 7 5 4 9 9 Si 1.86796 * 120.00332 * 201.74903 * 7 5 4 10 10 H 1.48500 * 109.47249 * 89.99994 * 9 7 5 11 11 H 1.48500 * 109.47354 * 210.00418 * 9 7 5 12 12 H 1.48506 * 109.46877 * 329.99772 * 9 7 5 13 13 C 1.34776 * 120.00183 * 83.92617 * 4 3 2 14 14 O 1.21296 * 119.99751 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00178 * 0.02562 * 13 4 3 16 16 O 1.42892 * 109.47308 * 179.97438 * 15 13 4 17 17 C 1.35905 * 117.00223 * 179.97438 * 16 15 13 18 18 C 1.38750 * 120.05041 * 0.02562 * 17 16 15 19 19 C 1.38129 * 119.94326 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.05138 * 359.74918 * 19 18 17 21 21 C 1.38244 * 120.11141 * 0.50653 * 20 19 18 22 22 C 1.50698 * 119.97029 * 179.76758 * 21 20 19 23 23 C 1.38171 * 120.05596 * 359.49230 * 21 20 19 24 24 H 4.40636 * 5.51419 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.46818 * 58.85095 * 3 2 1 26 26 H 1.08996 * 109.47033 * 298.84622 * 3 2 1 27 27 H 0.96999 * 119.99507 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47197 * 59.99121 * 15 13 4 29 29 H 1.09000 * 109.46746 * 300.00032 * 15 13 4 30 30 H 1.07998 * 120.03413 * 359.96297 * 18 17 16 31 31 H 1.07995 * 119.97486 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.94519 * 180.27860 * 20 19 18 33 33 H 1.09000 * 109.47358 * 269.72114 * 22 21 20 34 34 H 1.09000 * 109.47376 * 29.72931 * 22 21 20 35 35 H 1.09008 * 109.47282 * 149.72791 * 22 21 20 36 36 H 1.07998 * 120.02640 * 180.23449 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3818 -0.0277 5 6 3.4804 1.9626 -1.2203 6 1 4.1233 2.8303 -1.2316 7 6 3.0047 1.4347 -2.4143 8 7 1.9240 0.6870 -2.4178 9 14 3.9013 1.7878 -4.0145 10 1 4.9278 0.7405 -4.2484 11 1 2.9292 1.7877 -5.1371 12 1 4.5598 3.1163 -3.9302 13 6 3.2416 2.0816 1.1191 14 8 3.6458 3.2250 1.0961 15 6 2.8611 1.4431 2.4301 16 8 3.0623 2.3783 3.4915 17 6 2.7641 1.9579 4.7491 18 6 2.2881 0.6713 4.9570 19 6 1.9863 0.2461 6.2361 20 6 2.1631 1.1000 7.3095 21 6 2.6322 2.3841 7.1043 22 6 2.8186 3.3136 8.2757 23 6 2.9356 2.8141 5.8267 24 1 -1.0501 -0.0004 0.0002 25 1 3.0096 -0.5307 -0.8795 26 1 3.0096 -0.4950 0.9001 27 1 1.5918 0.3187 -3.2514 28 1 3.4816 0.5629 2.5991 29 1 1.8123 1.1477 2.3994 30 1 2.1536 0.0028 4.1195 31 1 1.6162 -0.7553 6.3986 32 1 1.9308 0.7643 8.3093 33 1 1.9001 3.8760 8.4431 34 1 3.0563 2.7323 9.1666 35 1 3.6345 4.0050 8.0646 36 1 3.3056 3.8161 5.6674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:56 Heat of formation + Delta-G solvation = 20.974024 kcal Electronic energy + Delta-G solvation = -20115.721192 eV Core-core repulsion = 16953.635309 eV Total energy + Delta-G solvation = -3162.085883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.06361 -38.67082 -37.19109 -35.16281 -32.47620 -32.25086 -31.32318 -30.37175 -28.00048 -26.88428 -26.39988 -24.37075 -22.43392 -21.26432 -19.22624 -17.98940 -17.77125 -16.71933 -16.13090 -15.91725 -15.73742 -15.45058 -14.56601 -14.29307 -14.08612 -13.97452 -13.60704 -13.15991 -13.07651 -12.60989 -12.40332 -12.23438 -11.91218 -11.82322 -11.65106 -11.49870 -11.06845 -10.74757 -10.72930 -10.51566 -10.37007 -9.45987 -9.33019 -9.01090 -8.74067 -8.49623 -8.03048 -7.95023 -6.40096 -3.95024 1.37057 1.54727 3.10954 3.16041 3.23891 3.33675 3.60909 3.81776 3.84100 3.94363 4.15290 4.77571 4.83034 4.93863 4.99189 5.11818 5.23248 5.33785 5.37397 5.38617 5.51056 5.52432 5.59210 5.70908 5.74398 5.87426 6.11719 6.15894 6.42247 6.50267 6.59900 6.61346 6.85985 6.92313 7.50523 7.60942 7.97293 8.34122 8.71631 9.04033 9.23761 9.77853 10.60551 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032832 B = 0.004119 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.610433 B = 6795.883994 C = 7421.937528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.122 4.122 3 C 0.230 3.770 4 N -0.434 5.434 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.452 3.548 14 O -0.560 6.560 15 C 0.050 3.950 16 O -0.286 6.286 17 C 0.142 3.858 18 C -0.218 4.218 19 C -0.076 4.076 20 C -0.169 4.169 21 C -0.051 4.051 22 C -0.113 4.113 23 C -0.156 4.156 24 H 0.200 0.800 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -4.467 14.526 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.124 4.124 3 C 0.106 3.894 4 N -0.155 5.155 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.171 4.171 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.239 3.761 14 O -0.442 6.442 15 C -0.029 4.029 16 O -0.197 6.197 17 C 0.096 3.904 18 C -0.237 4.237 19 C -0.094 4.094 20 C -0.187 4.187 21 C -0.051 4.051 22 C -0.170 4.170 23 C -0.175 4.175 24 H 0.217 0.783 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.711 -3.788 14.272 14.783 hybrid contribution -0.238 -0.338 -1.097 1.173 sum -0.949 -4.126 13.174 13.838 Atomic orbital electron populations 1.24311 0.95391 1.01495 1.05756 1.23120 0.94325 0.98892 0.96024 1.18271 0.84447 0.85138 1.01503 1.43600 1.56291 1.10007 1.05581 1.19680 1.28446 1.15228 0.81062 0.87631 1.25329 0.94911 0.97346 0.99555 1.70090 1.17754 1.33662 1.28113 0.85959 0.79100 0.79239 0.80663 1.20229 1.21049 1.19286 1.19524 0.85484 0.86790 0.84273 1.90571 1.49729 1.17603 1.86288 1.22634 1.01739 0.91833 0.86650 1.86194 1.80896 1.40424 1.12225 1.19176 0.93569 0.92610 0.85076 1.21326 1.07463 0.96179 0.98736 1.20891 0.97374 0.99240 0.91918 1.20857 1.04981 0.94031 0.98832 1.19662 0.96828 0.94725 0.93909 1.20789 1.02362 0.98381 0.95419 1.20308 1.06742 1.00372 0.90067 0.78259 0.87148 0.92032 0.92011 0.90593 0.90103 0.85377 0.85962 0.86283 0.91034 0.91502 0.91356 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.03 19.25 29.55 0.57 -4.47 16 2 C -0.12 -2.64 10.75 -37.12 -0.40 -3.04 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.84 16 4 N -0.43 -10.84 2.60 -117.93 -0.31 -11.15 16 5 C -0.32 -8.62 9.28 -14.93 -0.14 -8.76 16 6 H 0.11 3.03 7.42 -52.48 -0.39 2.64 16 7 C 0.03 0.86 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -22.08 9.59 55.50 0.53 -21.55 16 9 Si 0.92 20.12 29.60 -169.99 -5.03 15.09 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 C 0.45 11.24 7.64 -10.99 -0.08 11.16 16 14 O -0.56 -16.18 16.17 -14.36 -0.23 -16.41 16 15 C 0.05 0.98 3.83 36.00 0.14 1.12 16 16 O -0.29 -5.80 9.67 -39.35 -0.38 -6.18 16 17 C 0.14 2.39 6.69 -39.22 -0.26 2.13 16 18 C -0.22 -3.14 9.04 -39.43 -0.36 -3.50 16 19 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 20 C -0.17 -1.94 9.70 -39.56 -0.38 -2.32 16 21 C -0.05 -0.63 5.88 -104.65 -0.62 -1.24 16 22 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 23 C -0.16 -2.33 9.64 -39.43 -0.38 -2.71 16 24 H 0.20 3.26 7.80 -54.08 -0.42 2.84 16 25 H 0.11 2.45 6.60 -51.93 -0.34 2.10 16 26 H 0.06 1.05 6.69 -51.93 -0.35 0.71 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 29 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 30 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.07 0.58 8.09 -51.92 -0.42 0.16 16 36 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -32.07 315.99 -6.95 -39.02 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.22 Total: 4.40 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.07 Total: -7.98 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.23 Total: -32.69 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.61 Total: -22.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.07 -6.95 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.994 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds