Wall clock time and date at job start Mon Mar 30 2020 01:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46798 * 178.85088 * 3 2 1 5 5 C 1.37098 * 119.99717 * 263.92616 * 4 3 2 6 6 H 1.08003 * 119.99759 * 199.76063 * 5 4 3 7 7 C 1.38948 * 120.00285 * 19.75274 * 5 4 3 8 8 N 1.31417 * 119.99543 * 21.75179 * 7 5 4 9 9 Si 1.86796 * 120.00332 * 201.74903 * 7 5 4 10 10 H 1.48500 * 109.47249 * 89.99994 * 9 7 5 11 11 H 1.48500 * 109.47354 * 210.00418 * 9 7 5 12 12 H 1.48506 * 109.46877 * 329.99772 * 9 7 5 13 13 C 1.34776 * 120.00183 * 83.92617 * 4 3 2 14 14 O 1.21296 * 119.99751 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00178 * 0.02562 * 13 4 3 16 16 O 1.42892 * 109.47308 * 179.97438 * 15 13 4 17 17 C 1.35905 * 117.00223 * 179.97438 * 16 15 13 18 18 C 1.38750 * 120.05041 * 0.02562 * 17 16 15 19 19 C 1.38129 * 119.94326 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.05138 * 359.74918 * 19 18 17 21 21 C 1.38244 * 120.11141 * 0.50653 * 20 19 18 22 22 C 1.50698 * 119.97029 * 179.76758 * 21 20 19 23 23 C 1.38171 * 120.05596 * 359.49230 * 21 20 19 24 24 H 4.40636 * 5.51419 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.46818 * 58.85095 * 3 2 1 26 26 H 1.08996 * 109.47033 * 298.84622 * 3 2 1 27 27 H 0.96999 * 119.99507 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47197 * 59.99121 * 15 13 4 29 29 H 1.09000 * 109.46746 * 300.00032 * 15 13 4 30 30 H 1.07998 * 120.03413 * 359.96297 * 18 17 16 31 31 H 1.07995 * 119.97486 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.94519 * 180.27860 * 20 19 18 33 33 H 1.09000 * 109.47358 * 269.72114 * 22 21 20 34 34 H 1.09000 * 109.47376 * 29.72931 * 22 21 20 35 35 H 1.09008 * 109.47282 * 149.72791 * 22 21 20 36 36 H 1.07998 * 120.02640 * 180.23449 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3818 -0.0277 5 6 3.4804 1.9626 -1.2203 6 1 4.1233 2.8303 -1.2316 7 6 3.0047 1.4347 -2.4143 8 7 1.9240 0.6870 -2.4178 9 14 3.9013 1.7878 -4.0145 10 1 4.9278 0.7405 -4.2484 11 1 2.9292 1.7877 -5.1371 12 1 4.5598 3.1163 -3.9302 13 6 3.2416 2.0816 1.1191 14 8 3.6458 3.2250 1.0961 15 6 2.8611 1.4431 2.4301 16 8 3.0623 2.3783 3.4915 17 6 2.7641 1.9579 4.7491 18 6 2.2881 0.6713 4.9570 19 6 1.9863 0.2461 6.2361 20 6 2.1631 1.1000 7.3095 21 6 2.6322 2.3841 7.1043 22 6 2.8186 3.3136 8.2757 23 6 2.9356 2.8141 5.8267 24 1 -1.0501 -0.0004 0.0002 25 1 3.0096 -0.5307 -0.8795 26 1 3.0096 -0.4950 0.9001 27 1 1.5918 0.3187 -3.2514 28 1 3.4816 0.5629 2.5991 29 1 1.8123 1.1477 2.3994 30 1 2.1536 0.0028 4.1195 31 1 1.6162 -0.7553 6.3986 32 1 1.9308 0.7643 8.3093 33 1 1.9001 3.8760 8.4431 34 1 3.0563 2.7323 9.1666 35 1 3.6345 4.0050 8.0646 36 1 3.3056 3.8161 5.6674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:56 Heat of formation + Delta-G solvation = 3.114425 kcal Electronic energy + Delta-G solvation = -20116.495642 eV Core-core repulsion = 16953.635309 eV Total energy + Delta-G solvation = -3162.860333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37898 -40.32445 -38.48921 -37.08462 -34.12862 -33.39519 -33.10282 -31.56542 -29.53471 -28.16836 -27.74567 -26.21789 -23.46856 -22.48356 -20.89465 -19.76152 -19.10252 -18.46535 -17.71083 -17.22277 -17.17357 -16.81752 -16.27529 -15.88777 -15.61991 -15.11847 -14.66452 -14.58369 -14.22403 -14.15540 -14.04832 -13.57068 -13.48370 -13.04989 -12.89921 -12.80213 -12.52362 -12.42070 -12.17945 -11.92872 -11.79775 -11.22901 -11.12824 -10.72546 -10.41605 -9.90941 -9.73409 -9.15368 -8.37212 -6.00885 0.37149 0.49476 1.33901 1.41941 1.51952 1.70707 1.87341 2.21988 2.29307 2.37446 2.80799 2.97872 3.18661 3.75081 3.78314 3.91941 3.98780 3.99207 4.13753 4.22346 4.38692 4.46005 4.56199 4.59614 4.85934 4.87945 4.89267 5.01650 5.26539 5.37540 5.39441 5.43389 5.50636 5.65267 5.85283 5.98976 6.32671 6.47749 7.06084 7.10401 7.28761 7.84915 8.61005 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032832 B = 0.004119 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.610433 B = 6795.883994 C = 7421.937528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.162 4.162 3 C 0.229 3.771 4 N -0.440 5.440 5 C -0.358 4.358 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.865 5.865 9 Si 0.987 3.013 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.435 3.565 14 O -0.618 6.618 15 C 0.069 3.931 16 O -0.322 6.322 17 C 0.105 3.895 18 C -0.227 4.227 19 C -0.074 4.074 20 C -0.161 4.161 21 C -0.052 4.052 22 C -0.112 4.112 23 C -0.179 4.179 24 H 0.233 0.767 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.275 0.725 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -6.562 16.091 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.163 4.163 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.485 4.485 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.501 5.501 9 Si 0.811 3.189 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.224 3.776 14 O -0.504 6.504 15 C -0.009 4.009 16 O -0.236 6.236 17 C 0.060 3.940 18 C -0.245 4.245 19 C -0.092 4.092 20 C -0.179 4.179 21 C -0.052 4.052 22 C -0.168 4.168 23 C -0.197 4.197 24 H 0.250 0.750 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.862 -5.937 15.852 17.029 hybrid contribution 0.028 0.296 -1.493 1.523 sum -1.833 -5.641 14.358 15.535 Atomic orbital electron populations 1.25170 0.96360 0.99678 1.04195 1.23362 0.94921 1.00502 0.97517 1.18409 0.84804 0.83139 1.02907 1.43795 1.55639 1.11370 1.05088 1.19576 1.30011 1.15892 0.83052 0.90790 1.26005 0.95141 0.96662 1.01751 1.70169 1.17745 1.33102 1.29097 0.85040 0.78266 0.78796 0.76841 1.18558 1.20139 1.20449 1.20446 0.84601 0.86425 0.86116 1.90514 1.52285 1.20182 1.87450 1.22358 1.02637 0.91787 0.84110 1.86125 1.82191 1.41523 1.13722 1.19516 0.96192 0.94431 0.83852 1.21503 1.07511 0.95206 1.00314 1.21315 0.96176 1.00770 0.90928 1.21335 1.02972 0.93245 1.00385 1.20071 0.95614 0.95868 0.93611 1.20869 1.02973 0.98210 0.94792 1.20517 1.07902 1.00172 0.91136 0.75016 0.88471 0.87941 0.91506 0.87528 0.88992 0.84628 0.82696 0.82780 0.89934 0.89184 0.91371 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.01 19.25 74.32 1.43 -7.58 16 2 C -0.16 -6.84 10.75 31.13 0.33 -6.50 16 3 C 0.23 9.71 4.91 84.58 0.42 10.12 16 4 N -0.44 -22.63 2.60 -645.42 -1.68 -24.30 16 5 C -0.36 -20.28 9.28 84.04 0.78 -19.50 16 6 H 0.07 4.56 7.42 -2.91 -0.02 4.53 16 7 C 0.01 0.47 4.83 84.93 0.41 0.88 16 8 N -0.87 -44.17 9.59 21.66 0.21 -43.96 16 9 Si 0.99 41.53 29.60 68.60 2.03 43.56 16 10 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.43 22.58 7.64 87.66 0.67 23.25 16 14 O -0.62 -38.09 16.17 15.96 0.26 -37.83 16 15 C 0.07 2.75 3.83 71.24 0.27 3.02 16 16 O -0.32 -13.64 9.67 -73.45 -0.71 -14.35 16 17 C 0.11 3.57 6.69 22.50 0.15 3.72 16 18 C -0.23 -6.19 9.04 22.37 0.20 -5.99 16 19 C -0.07 -1.55 10.04 22.26 0.22 -1.33 16 20 C -0.16 -3.14 9.70 22.28 0.22 -2.92 16 21 C -0.05 -1.17 5.88 -19.88 -0.12 -1.28 16 22 C -0.11 -1.72 10.01 71.24 0.71 -1.00 16 23 C -0.18 -5.39 9.64 22.37 0.22 -5.18 16 24 H 0.23 6.87 7.80 -4.41 -0.03 6.84 16 25 H 0.10 4.32 6.60 -2.39 -0.02 4.30 16 26 H 0.10 3.38 6.69 -2.39 -0.02 3.36 16 27 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 28 H 0.11 3.45 6.94 -2.39 -0.02 3.44 16 29 H 0.09 3.38 7.01 -2.39 -0.02 3.36 16 30 H 0.14 3.37 6.30 -2.91 -0.02 3.35 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 36 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -73.40 315.99 7.11 -66.29 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.08 Total: 20.89 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 5.92 Total: -10.30 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.47 Total: -68.26 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.45 Total: -52.18 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -73.40 7.11 -66.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds