Wall clock time and date at job start Mon Mar 30 2020 01:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47187 * 240.00174 * 3 2 1 5 5 H 1.48503 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46970 * 119.99985 * 3 2 1 7 7 C 1.38648 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99958 * 185.11919 * 9 7 2 11 11 C 1.38951 * 120.03099 * 173.89079 * 10 9 7 12 12 C 1.38137 * 120.07217 * 179.71741 * 11 10 9 13 13 C 1.38191 * 120.13843 * 0.55980 * 12 11 10 14 14 C 1.38944 * 120.06990 * 359.71695 * 13 12 11 15 15 N 1.39834 * 120.04181 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99888 * 319.30986 * 15 14 13 17 17 O 1.21624 * 119.99959 * 352.69311 * 16 15 14 18 18 C 1.47062 * 119.99664 * 172.70173 * 16 15 14 19 19 C 1.33023 * 119.99645 * 186.04483 * 18 16 15 20 20 C 1.50701 * 119.99916 * 353.51669 * 19 18 16 21 21 C 1.53001 * 117.49777 * 180.41940 * 20 19 18 22 22 C 1.52997 * 117.49846 * 111.79693 * 20 19 18 23 23 C 1.38725 * 120.03088 * 354.16551 * 10 9 7 24 24 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96451 * 359.97438 * 11 10 9 26 26 H 1.08000 * 119.92686 * 180.25226 * 12 11 10 27 27 H 1.08002 * 119.96704 * 179.74104 * 13 12 11 28 28 H 0.97000 * 119.99970 * 139.30167 * 15 14 13 29 29 H 1.07996 * 120.00455 * 6.03674 * 18 16 15 30 30 H 1.07994 * 119.99946 * 173.51987 * 19 18 16 31 31 H 1.09003 * 115.55114 * 326.12232 * 20 19 18 32 32 H 1.09005 * 117.49673 * 359.97438 * 21 20 19 33 33 H 1.08998 * 117.49954 * 145.01933 * 21 20 19 34 34 H 1.09001 * 117.49683 * 214.98001 * 22 20 19 35 35 H 1.08999 * 117.50065 * 359.97197 * 22 20 19 36 36 H 1.07999 * 120.07282 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1069 11 6 1.4354 -4.7334 0.2412 12 6 2.1826 -5.8906 0.3446 13 6 3.5630 -5.8292 0.3266 14 6 4.2036 -4.6029 0.1983 15 7 5.6005 -4.5414 0.1795 16 6 6.3204 -5.3160 1.0152 17 8 5.7592 -5.9682 1.8749 18 6 7.7844 -5.3723 0.8877 19 6 8.4843 -6.2256 1.6303 20 6 7.7972 -7.0294 2.7040 21 6 8.6587 -7.9863 3.5305 22 6 7.6822 -8.5401 2.4909 23 6 3.4555 -3.4392 0.0883 24 1 -0.4850 0.8401 0.0004 25 1 0.3568 -4.7843 0.2605 26 1 1.6869 -6.8449 0.4449 27 1 4.1445 -6.7352 0.4119 28 1 6.0514 -3.9415 -0.4350 29 1 8.2912 -4.7210 0.1911 30 1 9.5449 -6.3422 1.4639 31 1 6.9726 -6.5285 3.2112 32 1 9.7224 -8.0347 3.2973 33 1 8.4011 -8.1150 4.5817 34 1 6.7821 -9.0331 2.8582 35 1 8.1032 -8.9526 1.5740 36 1 3.9510 -2.4848 -0.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491935522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:03 Heat of formation + Delta-G solvation = 15.075324 kcal Electronic energy + Delta-G solvation = -19763.760002 eV Core-core repulsion = 16601.418332 eV Total energy + Delta-G solvation = -3162.341669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20089 -38.78086 -37.48274 -36.31036 -34.15092 -32.59001 -32.20932 -29.38551 -28.55798 -25.38011 -24.47809 -22.47332 -21.99218 -21.79160 -20.64751 -19.58270 -17.97629 -17.47816 -16.84123 -15.86170 -15.23565 -15.10541 -14.91968 -14.69494 -14.19581 -13.95458 -13.60837 -13.55580 -13.09198 -12.89103 -12.38133 -11.92191 -11.75315 -11.67877 -11.49895 -11.16629 -11.05272 -10.93485 -10.78113 -10.50313 -10.47575 -9.70108 -9.51506 -9.31195 -9.16999 -8.80015 -7.74534 -7.16926 -6.44537 -4.04486 1.18658 2.10841 2.39438 3.11715 3.13568 3.16266 3.35806 3.38620 3.86493 3.96287 4.45159 4.58734 4.74822 4.88855 4.97336 5.08384 5.19063 5.24183 5.30190 5.48902 5.70292 5.74386 5.95885 5.98796 6.03694 6.07755 6.11482 6.24773 6.31818 6.44635 6.66278 7.00333 7.02116 7.14446 7.29779 7.42359 7.73144 7.82203 7.99645 8.40870 9.00729 9.70806 10.73458 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.003905 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.758671 B = 7168.808643 C = 7966.515241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.167 3.833 11 C -0.198 4.198 12 C -0.064 4.064 13 C -0.200 4.200 14 C 0.181 3.819 15 N -0.669 5.669 16 C 0.541 3.459 17 O -0.517 6.517 18 C -0.215 4.215 19 C -0.034 4.034 20 C -0.136 4.136 21 C -0.186 4.186 22 C -0.159 4.159 23 C -0.253 4.253 24 H 0.270 0.730 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.406 0.594 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.254 -10.740 1.174 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.113 3.887 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.221 4.221 14 C 0.088 3.912 15 N -0.314 5.314 16 C 0.331 3.669 17 O -0.394 6.394 18 C -0.236 4.236 19 C -0.054 4.054 20 C -0.153 4.153 21 C -0.223 4.223 22 C -0.196 4.196 23 C -0.274 4.274 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.241 0.759 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.446 -10.993 1.750 19.039 hybrid contribution 0.865 1.268 -0.422 1.592 sum 16.311 -9.725 1.328 19.037 Atomic orbital electron populations 1.70029 1.05932 1.27758 1.46053 1.25270 0.95832 0.98772 0.96559 0.85800 0.78728 0.79886 0.79114 1.19540 1.20250 1.19540 1.21235 0.91662 0.80887 1.53159 0.89283 1.84005 1.33992 1.11329 1.78635 1.19083 0.89451 0.88202 0.91996 1.20256 0.99746 0.90306 1.11468 1.20508 0.93029 0.96913 0.97870 1.20423 0.94294 0.95674 1.11729 1.17342 0.81087 0.93552 0.99169 1.43426 1.05403 1.43046 1.39535 1.18666 0.87833 0.79463 0.80896 1.90738 1.72512 1.43265 1.32869 1.22579 0.93116 1.03460 1.04451 1.23111 0.98664 0.92110 0.91481 1.21824 1.02032 0.92065 0.99414 1.23054 0.96851 1.05162 0.97281 1.22807 1.01439 0.94920 1.00420 1.20889 0.93980 0.97245 1.15316 0.91965 0.86358 0.86639 0.87052 0.75912 0.85234 0.85698 0.83843 0.89084 0.88660 0.88481 0.89134 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 8 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 9 O -0.18 -5.04 9.76 0.03 0.00 -5.04 16 10 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 11 C -0.20 -4.29 9.99 -39.35 -0.39 -4.68 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 13 C -0.20 -3.85 8.66 -39.34 -0.34 -4.19 16 14 C 0.18 3.50 6.11 -83.75 -0.51 2.99 16 15 N -0.67 -10.27 5.31 -10.96 -0.06 -10.33 16 16 C 0.54 8.12 7.39 -12.68 -0.09 8.02 16 17 O -0.52 -9.28 11.40 5.26 0.06 -9.22 16 18 C -0.22 -2.31 10.03 -37.82 -0.38 -2.69 16 19 C -0.03 -0.33 9.74 -36.12 -0.35 -0.69 16 20 C -0.14 -1.55 4.52 -91.77 -0.41 -1.96 16 21 C -0.19 -1.68 10.23 -26.73 -0.27 -1.95 16 22 C -0.16 -1.62 10.23 -26.73 -0.27 -1.90 16 23 C -0.25 -5.54 9.09 -39.20 -0.36 -5.90 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 26 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.11 2.05 7.02 -52.49 -0.37 1.69 16 28 H 0.41 4.89 8.81 -40.82 -0.36 4.53 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 2.07 5.90 -51.93 -0.31 1.76 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -32.49 314.35 -7.50 -39.98 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.12 Total: 9.44 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.85 Total: -20.40 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.70 Total: -34.90 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.06 Total: -14.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.49 -7.50 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491935522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.059 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds