Wall clock time and date at job start Mon Mar 30 2020 01:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47187 * 240.00174 * 3 2 1 5 5 H 1.48503 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46970 * 119.99985 * 3 2 1 7 7 C 1.38648 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99958 * 185.11919 * 9 7 2 11 11 C 1.38951 * 120.03099 * 173.89079 * 10 9 7 12 12 C 1.38137 * 120.07217 * 179.71741 * 11 10 9 13 13 C 1.38191 * 120.13843 * 0.55980 * 12 11 10 14 14 C 1.38944 * 120.06990 * 359.71695 * 13 12 11 15 15 N 1.39834 * 120.04181 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99888 * 319.30986 * 15 14 13 17 17 O 1.21624 * 119.99959 * 352.69311 * 16 15 14 18 18 C 1.47062 * 119.99664 * 172.70173 * 16 15 14 19 19 C 1.33023 * 119.99645 * 186.04483 * 18 16 15 20 20 C 1.50701 * 119.99916 * 353.51669 * 19 18 16 21 21 C 1.53001 * 117.49777 * 180.41940 * 20 19 18 22 22 C 1.52997 * 117.49846 * 111.79693 * 20 19 18 23 23 C 1.38725 * 120.03088 * 354.16551 * 10 9 7 24 24 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96451 * 359.97438 * 11 10 9 26 26 H 1.08000 * 119.92686 * 180.25226 * 12 11 10 27 27 H 1.08002 * 119.96704 * 179.74104 * 13 12 11 28 28 H 0.97000 * 119.99970 * 139.30167 * 15 14 13 29 29 H 1.07996 * 120.00455 * 6.03674 * 18 16 15 30 30 H 1.07994 * 119.99946 * 173.51987 * 19 18 16 31 31 H 1.09003 * 115.55114 * 326.12232 * 20 19 18 32 32 H 1.09005 * 117.49673 * 359.97438 * 21 20 19 33 33 H 1.08998 * 117.49954 * 145.01933 * 21 20 19 34 34 H 1.09001 * 117.49683 * 214.98001 * 22 20 19 35 35 H 1.08999 * 117.50065 * 359.97197 * 22 20 19 36 36 H 1.07999 * 120.07282 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1069 11 6 1.4354 -4.7334 0.2412 12 6 2.1826 -5.8906 0.3446 13 6 3.5630 -5.8292 0.3266 14 6 4.2036 -4.6029 0.1983 15 7 5.6005 -4.5414 0.1795 16 6 6.3204 -5.3160 1.0152 17 8 5.7592 -5.9682 1.8749 18 6 7.7844 -5.3723 0.8877 19 6 8.4843 -6.2256 1.6303 20 6 7.7972 -7.0294 2.7040 21 6 8.6587 -7.9863 3.5305 22 6 7.6822 -8.5401 2.4909 23 6 3.4555 -3.4392 0.0883 24 1 -0.4850 0.8401 0.0004 25 1 0.3568 -4.7843 0.2605 26 1 1.6869 -6.8449 0.4449 27 1 4.1445 -6.7352 0.4119 28 1 6.0514 -3.9415 -0.4350 29 1 8.2912 -4.7210 0.1911 30 1 9.5449 -6.3422 1.4639 31 1 6.9726 -6.5285 3.2112 32 1 9.7224 -8.0347 3.2973 33 1 8.4011 -8.1150 4.5817 34 1 6.7821 -9.0331 2.8582 35 1 8.1032 -8.9526 1.5740 36 1 3.9510 -2.4848 -0.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491935522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:02 Heat of formation + Delta-G solvation = -5.289397 kcal Electronic energy + Delta-G solvation = -19764.643082 eV Core-core repulsion = 16601.418332 eV Total energy + Delta-G solvation = -3163.224750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54070 -40.41171 -38.61488 -37.77005 -35.57484 -34.24856 -33.42817 -31.01116 -30.21921 -27.35775 -25.60138 -23.49860 -23.28038 -23.08347 -21.93058 -20.78910 -19.74774 -19.15262 -17.91892 -17.26921 -16.83882 -16.46601 -16.22016 -15.93436 -15.70584 -15.51200 -15.43362 -14.68718 -14.39264 -14.21495 -13.87779 -13.59225 -13.18794 -12.89854 -12.68260 -12.56735 -12.42918 -12.39465 -12.15479 -11.95010 -11.44416 -11.29977 -11.13936 -10.75427 -10.42024 -10.06481 -9.36830 -8.90184 -8.47210 -6.16451 0.18827 0.58515 0.71589 1.35093 1.46082 1.51631 2.15150 2.19162 2.25002 2.83230 3.08763 3.14478 3.49248 3.66428 3.88997 4.06852 4.12097 4.19742 4.28943 4.42182 4.43491 4.55303 4.62390 4.76653 4.79014 5.00162 5.01348 5.09798 5.21106 5.27421 5.32097 5.39317 5.53523 5.61950 5.65347 5.68280 6.00721 6.16822 6.54491 6.96856 7.22639 7.76061 8.75629 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.003905 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.758671 B = 7168.808643 C = 7966.515241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.226 6.226 10 C 0.133 3.867 11 C -0.213 4.213 12 C -0.052 4.052 13 C -0.193 4.193 14 C 0.188 3.812 15 N -0.665 5.665 16 C 0.534 3.466 17 O -0.552 6.552 18 C -0.226 4.226 19 C -0.016 4.016 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.165 4.165 23 C -0.259 4.259 24 H 0.273 0.727 25 H 0.120 0.880 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.422 0.578 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.063 -11.747 1.015 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.133 6.133 10 C 0.082 3.918 11 C -0.232 4.232 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.094 3.906 15 N -0.311 5.311 16 C 0.327 3.673 17 O -0.432 6.432 18 C -0.247 4.247 19 C -0.035 4.035 20 C -0.180 4.180 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.281 4.281 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.172 0.828 27 H 0.143 0.857 28 H 0.260 0.740 29 H 0.184 0.816 30 H 0.184 0.816 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.312 -12.042 1.578 22.813 hybrid contribution -0.207 1.235 -0.280 1.283 sum 19.105 -10.806 1.298 21.988 Atomic orbital electron populations 1.70181 1.08054 1.28933 1.48609 1.26597 0.96844 1.02740 0.95731 0.84656 0.77433 0.74225 0.79961 1.17744 1.19665 1.18413 1.21778 0.92516 0.81402 1.53515 0.88077 1.83973 1.35610 1.12454 1.81215 1.19617 0.90760 0.88093 0.93369 1.20492 1.00268 0.90397 1.12081 1.20911 0.93019 0.97507 0.95648 1.20747 0.94615 0.96099 1.09950 1.17413 0.83190 0.92676 0.97360 1.43464 1.03676 1.43785 1.40181 1.19515 0.89704 0.78284 0.79797 1.90746 1.73653 1.44582 1.34201 1.22650 0.90146 1.05374 1.06489 1.23484 1.00336 0.90191 0.89475 1.21738 1.02487 0.92784 1.01014 1.23147 0.97790 1.02291 0.96941 1.22857 1.01730 0.93924 1.01650 1.20928 0.93299 0.98201 1.15657 0.91780 0.86235 0.82772 0.85690 0.73984 0.81644 0.81567 0.87516 0.86473 0.88639 0.89768 0.87751 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.51 13.67 21.61 0.30 -56.21 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.42 -24.20 9.49 67.92 0.64 -23.56 16 8 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.69 9.76 -22.83 -0.22 -13.91 16 10 C 0.13 6.75 6.64 22.56 0.15 6.90 16 11 C -0.21 -9.39 9.99 22.42 0.22 -9.17 16 12 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 13 C -0.19 -7.16 8.66 22.43 0.19 -6.96 16 14 C 0.19 7.13 6.11 38.16 0.23 7.36 16 15 N -0.66 -19.33 5.31 -306.83 -1.63 -20.96 16 16 C 0.53 15.08 7.39 86.56 0.64 15.72 16 17 O -0.55 -19.46 11.40 -4.11 -0.05 -19.50 16 18 C -0.23 -4.09 10.03 23.42 0.23 -3.85 16 19 C -0.02 -0.25 9.74 24.52 0.24 -0.01 16 20 C -0.16 -3.38 4.52 -11.54 -0.05 -3.43 16 21 C -0.16 -2.48 10.23 30.60 0.31 -2.17 16 22 C -0.16 -3.03 10.23 30.59 0.31 -2.71 16 23 C -0.26 -11.56 9.09 22.52 0.20 -11.36 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 26 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.13 4.35 7.02 -2.91 -0.02 4.33 16 28 H 0.42 9.31 8.81 -92.71 -0.82 8.49 16 29 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 30 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.11 3.08 5.90 -2.39 -0.01 3.07 16 32 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.13 5.60 5.64 -2.91 -0.02 5.58 16 Total: -1.00 -75.59 314.35 4.75 -70.84 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.30 Total: 30.94 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.03 Total: -35.68 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.33 Total: -77.18 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.27 Total: -33.41 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.59 4.75 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491935522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.554 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds