Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00376 * 2 1 4 4 H 1.48503 * 109.47012 * 270.00214 * 3 2 1 5 5 H 1.48496 * 109.47010 * 29.99901 * 3 2 1 6 6 H 1.48491 * 109.47302 * 149.99962 * 3 2 1 7 7 C 1.37883 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99942 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46595 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46859 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00036 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99864 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47201 * 179.97438 * 14 13 11 16 16 C 1.33998 * 124.91908 * 89.99983 * 15 14 13 17 17 C 1.46785 * 106.18190 * 180.02562 * 16 15 14 18 18 C 1.39405 * 134.36624 * 179.97438 * 17 16 15 19 19 C 1.36748 * 119.71388 * 179.97438 * 18 17 16 20 20 C 1.38738 * 120.41266 * 0.04525 * 19 18 17 21 21 C 1.37848 * 120.69043 * 359.97438 * 20 19 18 22 22 C 1.38937 * 119.81556 * 0.02562 * 21 20 19 23 23 O 1.34443 * 124.92313 * 270.02884 * 15 14 13 24 24 H 0.97006 * 120.00190 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47426 * 59.99512 * 9 7 2 26 26 H 1.09000 * 109.46681 * 299.99415 * 9 7 2 27 27 H 1.09003 * 109.47565 * 60.00137 * 10 9 7 28 28 H 1.09000 * 109.47382 * 299.99297 * 10 9 7 29 29 H 0.96999 * 120.00544 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.47443 * 60.00210 * 14 13 11 31 31 H 1.08998 * 109.47121 * 299.99445 * 14 13 11 32 32 H 1.08001 * 126.91274 * 0.02562 * 16 15 14 33 33 H 1.07996 * 120.14611 * 359.97438 * 18 17 16 34 34 H 1.07993 * 119.79240 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.65307 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.09001 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0213 -2.6367 -0.0001 11 6 5.5284 -2.6368 -0.0001 12 8 6.1348 -1.5865 -0.0005 13 7 6.2022 -3.8040 0.0003 14 6 7.6672 -3.8040 0.0008 15 6 8.1695 -5.2249 0.0018 16 6 8.4256 -5.9487 -1.0964 17 6 8.8881 -7.2592 -0.6239 18 6 9.3021 -8.4320 -1.2537 19 6 9.6824 -9.5080 -0.5004 20 6 9.6578 -9.4393 0.8851 21 6 9.2511 -8.2882 1.5253 22 6 8.8606 -7.1836 0.7786 23 8 8.4251 -5.9501 1.1047 24 1 -0.4851 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8904 26 1 3.8751 -0.6798 -0.8895 27 1 3.6583 -3.1503 -0.8903 28 1 3.6577 -3.1507 0.8897 29 1 5.7172 -4.6440 0.0002 30 1 8.0303 -3.2901 0.8909 31 1 8.0308 -3.2904 -0.8892 32 1 8.3140 -5.6317 -2.1228 33 1 9.3222 -8.4906 -2.3319 34 1 10.0037 -10.4170 -0.9869 35 1 9.9604 -10.2966 1.4681 36 1 9.2353 -8.2455 2.6044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517638801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = -39.495239 kcal Electronic energy + Delta-G solvation = -19217.218122 eV Core-core repulsion = 16052.510096 eV Total energy + Delta-G solvation = -3164.708027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.53537 -40.73014 -38.86390 -36.26477 -35.51613 -33.82815 -33.30916 -31.39997 -31.16729 -28.52291 -26.79792 -23.97567 -23.23157 -22.72171 -22.09460 -21.28569 -19.27693 -18.37686 -18.15754 -17.67614 -17.30465 -16.79222 -16.63039 -16.20844 -16.00180 -15.18903 -14.94039 -14.86215 -14.67751 -14.45359 -14.09480 -13.92030 -13.40833 -13.34089 -13.23349 -12.89320 -12.74295 -12.11671 -11.96643 -11.88746 -11.76110 -11.40306 -11.29370 -10.84917 -10.77636 -10.24317 -9.63603 -9.22317 -8.30937 -6.34041 -0.16566 0.36909 1.14533 1.34464 1.36455 1.51450 1.56743 1.63151 2.35017 2.35926 2.75184 3.04848 3.21485 3.66635 3.92514 3.98405 4.07739 4.14987 4.20969 4.36187 4.40600 4.49022 4.50634 4.55471 4.73032 4.90829 4.99129 5.17551 5.23303 5.31469 5.38305 5.42561 5.45364 5.50172 5.61489 5.72356 6.14726 6.23569 6.45225 6.72514 7.19888 7.31333 8.84774 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.045389 B = 0.002786 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.736917 B =10047.901705 C =10228.435533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.521 3.479 12 O -0.579 6.579 13 N -0.720 5.720 14 C 0.199 3.801 15 C 0.004 3.996 16 C -0.172 4.172 17 C -0.157 4.157 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.085 4.085 21 C -0.125 4.125 22 C 0.028 3.972 23 O -0.208 6.208 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.415 0.585 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.181 0.819 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.030 -21.732 -1.344 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.034 4.034 10 C -0.156 4.156 11 C 0.310 3.690 12 O -0.458 6.458 13 N -0.374 5.374 14 C 0.076 3.924 15 C -0.044 4.044 16 C -0.192 4.192 17 C -0.158 4.158 18 C -0.095 4.095 19 C -0.154 4.154 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.019 4.019 23 O -0.111 6.111 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.198 0.802 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.291 -20.774 -1.065 31.228 hybrid contribution -0.376 0.662 0.038 0.762 sum 22.915 -20.112 -1.027 30.507 Atomic orbital electron populations 1.70027 1.07843 1.28112 1.52528 1.25831 0.95514 1.02963 0.94266 0.85802 0.79238 0.79326 0.79200 1.19236 1.20499 1.18426 1.21440 0.91312 0.93693 1.50330 0.93253 1.19236 0.93878 0.93673 0.96586 1.21509 0.88869 1.00067 1.05186 1.21166 0.90985 0.82875 0.73991 1.90656 1.71217 1.32955 1.50987 1.45990 1.06220 1.09107 1.76087 1.19684 0.80477 0.87339 1.04855 1.22127 1.03782 0.94336 0.84109 1.22669 1.04469 0.91987 1.00101 1.20266 1.06013 0.96472 0.93071 1.20676 0.96791 0.90591 1.01404 1.21242 1.00657 0.99494 0.94014 1.21413 0.96786 0.96872 0.95212 1.20350 1.03175 0.90006 1.00777 1.20156 1.01594 0.85514 0.94648 1.83942 1.70022 1.22458 1.34670 0.92387 0.97085 0.96937 0.87655 0.88064 0.74818 0.90296 0.87024 0.80194 0.83499 0.82254 0.81594 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.94 46.74 27.47 68.60 1.88 48.62 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.00 0.21 3.33 29.85 0.10 0.31 16 10 C -0.12 -4.35 5.64 29.85 0.17 -4.18 16 11 C 0.52 18.01 7.83 87.66 0.69 18.70 16 12 O -0.58 -24.66 15.98 -3.03 -0.05 -24.71 16 13 N -0.72 -18.17 5.55 -466.77 -2.59 -20.76 16 14 C 0.20 4.51 6.17 85.64 0.53 5.04 16 15 C 0.00 0.08 6.60 24.72 0.16 0.24 16 16 C -0.17 -3.26 11.01 23.54 0.26 -3.00 16 17 C -0.16 -3.09 6.40 -20.21 -0.13 -3.22 16 18 C -0.08 -1.09 10.05 22.20 0.22 -0.87 16 19 C -0.14 -1.46 9.98 22.04 0.22 -1.24 16 20 C -0.09 -0.94 10.01 22.30 0.22 -0.72 16 21 C -0.12 -2.03 10.07 22.34 0.23 -1.80 16 22 C 0.03 0.61 7.42 22.99 0.17 0.78 16 23 O -0.21 -5.12 10.58 -8.93 -0.09 -5.21 16 24 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 25 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 26 H 0.01 0.62 7.52 -2.39 -0.02 0.61 16 27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.42 8.56 8.46 -92.71 -0.78 7.78 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -75.31 316.23 3.25 -72.06 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.26 Total: 8.23 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.55 Total: -19.16 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.29 Total: -79.83 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.14 Total: -29.92 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.62 kcal Total: -75.31 3.25 -72.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517638801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.565 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds