Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38742 * 119.78863 * 2 1 4 4 C 1.37852 * 120.68721 * 179.97438 * 3 2 1 5 5 C 1.38943 * 119.81618 * 0.02562 * 4 3 2 6 6 O 1.34811 * 133.49849 * 180.02562 * 5 4 3 7 7 C 1.34451 * 110.88961 * 179.97438 * 6 5 4 8 8 C 1.33995 * 110.15286 * 359.97438 * 7 6 5 9 9 C 1.50705 * 126.90613 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47381 * 265.03316 * 9 8 7 11 11 O 1.21291 * 119.99550 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99992 * 0.02562 * 12 10 9 14 14 C 1.37100 * 119.99723 * 179.97438 * 12 10 9 15 15 H 1.08001 * 120.00188 * 24.39891 * 14 12 10 16 16 C 1.38946 * 119.99782 * 204.39768 * 14 12 10 17 17 N 1.31421 * 120.00293 * 12.64098 * 16 14 12 18 18 Si 1.86806 * 120.00115 * 192.64182 * 16 14 12 19 19 H 1.48498 * 109.47167 * 89.99546 * 18 16 14 20 20 H 1.48499 * 109.47079 * 210.00197 * 18 16 14 21 21 H 1.48504 * 109.46882 * 330.00168 * 18 16 14 22 22 C 1.40488 * 119.22048 * 0.02562 * 5 4 3 23 23 C 1.36736 * 119.79365 * 179.75944 * 2 1 3 24 24 H 1.09006 * 109.47000 * 90.00045 * 1 2 3 25 25 H 1.09003 * 109.46965 * 209.99632 * 1 2 3 26 26 H 1.08994 * 109.47281 * 329.99663 * 1 2 3 27 27 H 1.07994 * 119.66041 * 359.95846 * 3 2 1 28 28 H 1.07994 * 120.09281 * 180.02562 * 4 3 2 29 29 H 1.08000 * 124.92330 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.46708 * 25.03283 * 9 8 7 31 31 H 1.08995 * 109.47100 * 145.02725 * 9 8 7 32 32 H 1.08994 * 109.47138 * 85.85953 * 13 12 10 33 33 H 1.08999 * 109.46841 * 205.85839 * 13 12 10 34 34 H 1.09000 * 109.46537 * 325.85343 * 13 12 10 35 35 H 0.96999 * 119.99546 * 180.02562 * 17 16 14 36 36 H 1.08002 * 120.14356 * 359.95243 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5746 1.2257 0.0005 5 6 4.2843 0.0312 0.0005 6 8 5.5990 -0.2671 0.0014 7 6 5.7886 -1.5982 0.0015 8 6 4.6083 -2.2326 0.0013 9 6 4.3817 -3.7225 0.0007 10 6 4.1846 -4.2002 -1.4149 11 8 4.2247 -3.4087 -2.3331 12 7 3.9648 -5.5070 -1.6607 13 6 3.9170 -6.4631 -0.5516 14 6 3.7850 -5.9415 -2.9485 15 1 4.1905 -5.3725 -3.7720 16 6 3.0809 -7.1139 -3.1942 17 7 2.3794 -7.6728 -2.2336 18 14 3.1314 -7.8958 -4.8900 19 1 4.2634 -8.8543 -4.9597 20 1 1.8570 -8.6156 -5.1413 21 1 3.3138 -6.8389 -5.9171 22 6 3.5805 -1.1847 -0.0006 23 6 2.1864 -1.1866 0.0050 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6473 2.1341 -0.0007 28 1 4.1014 2.1685 0.0009 29 1 6.7524 -2.0854 0.0025 30 1 5.2477 -4.2218 0.4355 31 1 3.4946 -3.9553 0.5897 32 1 2.9081 -6.4919 -0.1400 33 1 4.1899 -7.4541 -0.9142 34 1 4.6175 -6.1545 0.2244 35 1 1.8882 -8.4914 -2.4052 36 1 1.6454 -2.1213 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528320674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -3.729853 kcal Electronic energy + Delta-G solvation = -20449.758172 eV Core-core repulsion = 17286.601048 eV Total energy + Delta-G solvation = -3163.157123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.13459 -38.37582 -38.01535 -34.75068 -33.36450 -31.98040 -31.60803 -29.88989 -27.68101 -26.62263 -26.04937 -24.15768 -22.83488 -21.31099 -20.39155 -18.65150 -16.86005 -16.84069 -16.64141 -16.08480 -15.55126 -15.15429 -14.59827 -14.24924 -14.03327 -13.90255 -13.68584 -13.51189 -12.83819 -12.48992 -12.17405 -12.02926 -11.89827 -11.59408 -11.47797 -11.43752 -11.23846 -11.07222 -10.86430 -10.59109 -10.34729 -10.22283 -9.67974 -8.99440 -8.39748 -8.19631 -7.79784 -7.63823 -6.30709 -3.86913 1.18360 1.56949 2.66841 3.09451 3.17223 3.25834 3.31774 3.90176 3.92417 4.17195 4.70554 4.83481 4.95987 5.01913 5.11402 5.22621 5.34712 5.44479 5.56540 5.67120 5.69226 5.73799 5.92995 5.95487 5.97857 6.06073 6.24460 6.34828 6.46174 6.50646 6.74319 6.75655 6.84734 6.89954 7.19311 7.45387 7.58347 8.16846 8.51573 9.21762 9.44471 10.01915 10.74332 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004797 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.463766 B = 5836.168212 C = 6373.178429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.099 4.099 4 C -0.108 4.108 5 C 0.044 3.956 6 O -0.197 6.197 7 C 0.000 4.000 8 C -0.133 4.133 9 C -0.065 4.065 10 C 0.450 3.550 11 O -0.579 6.579 12 N -0.450 5.450 13 C 0.111 3.889 14 C -0.304 4.304 15 H 0.097 0.903 16 C 0.030 3.970 17 N -0.884 5.884 18 Si 0.925 3.075 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.104 4.104 23 C -0.061 4.061 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.204 0.796 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.267 0.733 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 10.587 8.772 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.110 4.110 3 C -0.117 4.117 4 C -0.127 4.127 5 C -0.003 4.003 6 O -0.099 6.099 7 C -0.064 4.064 8 C -0.135 4.135 9 C -0.105 4.105 10 C 0.237 3.763 11 O -0.463 6.463 12 N -0.169 5.169 13 C -0.032 4.032 14 C -0.432 4.432 15 H 0.114 0.886 16 C -0.173 4.173 17 N -0.524 5.524 18 Si 0.752 3.248 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.105 4.105 23 C -0.079 4.079 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.221 0.779 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.597 10.975 8.329 13.791 hybrid contribution -0.091 -0.886 -0.786 1.188 sum 0.505 10.089 7.542 12.607 Atomic orbital electron populations 1.20729 0.90933 1.02475 1.02371 1.19453 0.96237 0.92658 1.02640 1.20700 0.92463 0.97691 1.00894 1.19799 0.93051 0.94359 1.05470 1.19583 0.81550 0.95483 1.03706 1.83947 1.24257 1.24838 1.76836 1.23581 0.99655 0.79367 1.03798 1.20632 0.91531 0.95008 1.06295 1.19996 1.03241 0.89489 0.97808 1.19959 0.84217 0.82622 0.89492 1.90541 1.56049 1.53701 1.46038 1.43579 1.61723 1.04516 1.07121 1.21480 0.99389 0.94468 0.87910 1.19637 1.32639 1.07146 0.83803 0.88566 1.25329 0.94837 0.97917 0.99203 1.69995 1.29076 1.20350 1.32952 0.85944 0.77501 0.79169 0.82210 1.20391 1.20963 1.19409 1.19746 0.94258 0.92343 1.04138 1.20191 0.91696 0.98141 0.97893 0.91249 0.91555 0.91780 0.85250 0.85450 0.77919 0.89349 0.89258 0.93053 0.90718 0.95631 0.92320 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.00 36.01 0.36 -0.84 16 2 C -0.11 -1.56 5.85 -104.98 -0.61 -2.18 16 3 C -0.10 -1.28 9.66 -39.54 -0.38 -1.67 16 4 C -0.11 -1.53 10.07 -39.46 -0.40 -1.93 16 5 C 0.04 0.75 7.42 -38.47 -0.29 0.47 16 6 O -0.20 -3.34 10.58 3.90 0.04 -3.30 16 7 C 0.00 0.01 11.89 29.24 0.35 0.35 16 8 C -0.13 -2.45 4.85 -102.66 -0.50 -2.95 16 9 C -0.07 -1.21 4.86 -29.03 -0.14 -1.35 16 10 C 0.45 11.04 7.62 -10.99 -0.08 10.95 16 11 O -0.58 -16.52 15.75 5.55 0.09 -16.43 16 12 N -0.45 -11.55 3.01 -122.19 -0.37 -11.91 16 13 C 0.11 2.45 8.44 59.85 0.51 2.95 16 14 C -0.30 -8.57 9.24 -14.93 -0.14 -8.70 16 15 H 0.10 2.86 7.45 -52.49 -0.39 2.47 16 16 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 17 N -0.88 -23.65 10.83 55.50 0.60 -23.05 16 18 Si 0.92 20.93 29.57 -169.99 -5.03 15.90 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.10 -1.93 6.38 -105.16 -0.67 -2.60 16 23 C -0.06 -1.04 9.68 -39.69 -0.38 -1.43 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.20 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.09 1.37 7.41 -51.93 -0.38 0.99 16 31 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 32 H 0.05 1.15 7.82 -51.93 -0.41 0.75 16 33 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 34 H 0.03 0.45 6.61 -51.93 -0.34 0.11 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -33.30 311.09 -6.83 -40.13 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.39 Total: 2.16 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.47 Total: -8.20 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.23 Total: -34.96 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.13 Total: -19.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.30 -6.83 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528320674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds