Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38742 * 119.78863 * 2 1 4 4 C 1.37852 * 120.68721 * 179.97438 * 3 2 1 5 5 C 1.38943 * 119.81618 * 0.02562 * 4 3 2 6 6 O 1.34811 * 133.49849 * 180.02562 * 5 4 3 7 7 C 1.34451 * 110.88961 * 179.97438 * 6 5 4 8 8 C 1.33995 * 110.15286 * 359.97438 * 7 6 5 9 9 C 1.50705 * 126.90613 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47381 * 265.03316 * 9 8 7 11 11 O 1.21291 * 119.99550 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99992 * 0.02562 * 12 10 9 14 14 C 1.37100 * 119.99723 * 179.97438 * 12 10 9 15 15 H 1.08001 * 120.00188 * 24.39891 * 14 12 10 16 16 C 1.38946 * 119.99782 * 204.39768 * 14 12 10 17 17 N 1.31421 * 120.00293 * 12.64098 * 16 14 12 18 18 Si 1.86806 * 120.00115 * 192.64182 * 16 14 12 19 19 H 1.48498 * 109.47167 * 89.99546 * 18 16 14 20 20 H 1.48499 * 109.47079 * 210.00197 * 18 16 14 21 21 H 1.48504 * 109.46882 * 330.00168 * 18 16 14 22 22 C 1.40488 * 119.22048 * 0.02562 * 5 4 3 23 23 C 1.36736 * 119.79365 * 179.75944 * 2 1 3 24 24 H 1.09006 * 109.47000 * 90.00045 * 1 2 3 25 25 H 1.09003 * 109.46965 * 209.99632 * 1 2 3 26 26 H 1.08994 * 109.47281 * 329.99663 * 1 2 3 27 27 H 1.07994 * 119.66041 * 359.95846 * 3 2 1 28 28 H 1.07994 * 120.09281 * 180.02562 * 4 3 2 29 29 H 1.08000 * 124.92330 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.46708 * 25.03283 * 9 8 7 31 31 H 1.08995 * 109.47100 * 145.02725 * 9 8 7 32 32 H 1.08994 * 109.47138 * 85.85953 * 13 12 10 33 33 H 1.08999 * 109.46841 * 205.85839 * 13 12 10 34 34 H 1.09000 * 109.46537 * 325.85343 * 13 12 10 35 35 H 0.96999 * 119.99546 * 180.02562 * 17 16 14 36 36 H 1.08002 * 120.14356 * 359.95243 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5746 1.2257 0.0005 5 6 4.2843 0.0312 0.0005 6 8 5.5990 -0.2671 0.0014 7 6 5.7886 -1.5982 0.0015 8 6 4.6083 -2.2326 0.0013 9 6 4.3817 -3.7225 0.0007 10 6 4.1846 -4.2002 -1.4149 11 8 4.2247 -3.4087 -2.3331 12 7 3.9648 -5.5070 -1.6607 13 6 3.9170 -6.4631 -0.5516 14 6 3.7850 -5.9415 -2.9485 15 1 4.1905 -5.3725 -3.7720 16 6 3.0809 -7.1139 -3.1942 17 7 2.3794 -7.6728 -2.2336 18 14 3.1314 -7.8958 -4.8900 19 1 4.2634 -8.8543 -4.9597 20 1 1.8570 -8.6156 -5.1413 21 1 3.3138 -6.8389 -5.9171 22 6 3.5805 -1.1847 -0.0006 23 6 2.1864 -1.1866 0.0050 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6473 2.1341 -0.0007 28 1 4.1014 2.1685 0.0009 29 1 6.7524 -2.0854 0.0025 30 1 5.2477 -4.2218 0.4355 31 1 3.4946 -3.9553 0.5897 32 1 2.9081 -6.4919 -0.1400 33 1 4.1899 -7.4541 -0.9142 34 1 4.6175 -6.1545 0.2244 35 1 1.8882 -8.4914 -2.4052 36 1 1.6454 -2.1213 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528320674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -23.674226 kcal Electronic energy + Delta-G solvation = -20450.623024 eV Core-core repulsion = 17286.601048 eV Total energy + Delta-G solvation = -3164.021976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.36826 -40.28784 -39.14154 -36.70959 -34.80487 -33.61898 -33.04430 -31.17457 -29.20785 -27.91357 -27.64518 -26.08191 -23.96742 -22.46591 -21.93051 -20.26622 -18.87623 -18.04413 -18.01006 -17.74131 -17.01378 -16.51653 -16.33236 -15.91288 -15.83081 -15.08864 -14.85645 -14.47039 -14.29940 -14.21206 -13.66939 -13.47381 -13.33649 -13.12113 -13.01774 -12.82176 -12.63226 -12.54686 -12.49717 -12.27627 -12.15516 -11.74313 -11.00229 -10.99206 -10.32453 -9.66179 -9.36002 -9.05900 -8.34230 -5.99543 0.00748 0.38975 1.36153 1.36445 1.40962 1.52165 1.90953 2.04218 2.28454 2.72126 3.07812 3.18613 3.53513 3.66973 3.93255 4.00033 4.14252 4.23364 4.38463 4.43169 4.51552 4.58568 4.61708 4.73293 4.83369 4.87345 4.98314 5.04740 5.17053 5.30539 5.31823 5.37643 5.43719 5.49140 5.63268 5.76798 6.11056 6.22854 6.49987 7.17894 7.47692 8.05548 8.68578 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004797 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.463766 B = 5836.168212 C = 6373.178429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.094 4.094 4 C -0.106 4.106 5 C 0.016 3.984 6 O -0.201 6.201 7 C 0.013 3.987 8 C -0.174 4.174 9 C -0.048 4.048 10 C 0.441 3.559 11 O -0.629 6.629 12 N -0.465 5.465 13 C 0.119 3.881 14 C -0.343 4.343 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.897 5.897 18 Si 0.988 3.012 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.279 1.279 22 C -0.135 4.135 23 C -0.098 4.098 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.240 0.760 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.273 0.727 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 11.548 9.590 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.031 4.031 6 O -0.103 6.103 7 C -0.051 4.051 8 C -0.175 4.175 9 C -0.088 4.088 10 C 0.231 3.769 11 O -0.516 6.516 12 N -0.185 5.185 13 C -0.024 4.024 14 C -0.471 4.471 15 H 0.084 0.916 16 C -0.203 4.203 17 N -0.536 5.536 18 Si 0.811 3.189 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.204 1.204 22 C -0.136 4.136 23 C -0.116 4.116 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.190 0.810 28 H 0.177 0.823 29 H 0.256 0.744 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.492 11.916 9.188 15.055 hybrid contribution -0.117 -1.109 -1.027 1.517 sum 0.374 10.806 8.161 13.547 Atomic orbital electron populations 1.20807 0.88700 1.04005 1.02916 1.19903 0.97970 0.92253 1.00495 1.21218 0.92251 0.98742 0.98977 1.20325 0.93686 0.94582 1.03813 1.20068 0.81531 0.96248 1.05211 1.83937 1.24393 1.25105 1.76825 1.24251 1.00504 0.79146 1.01234 1.20797 0.92704 0.94946 1.09090 1.19853 1.05113 0.90196 0.93592 1.20968 0.82502 0.81846 0.91565 1.90493 1.57875 1.54887 1.48325 1.43854 1.61724 1.05693 1.07186 1.21465 1.00059 0.93095 0.87732 1.19561 1.34628 1.08300 0.84645 0.91565 1.26057 0.93847 0.97556 1.02865 1.70064 1.28670 1.20481 1.34359 0.85026 0.78283 0.78075 0.77499 1.18779 1.19789 1.20431 1.20094 0.95060 0.93293 1.05178 1.20319 0.91666 0.98918 1.00701 0.91029 0.91655 0.88703 0.80977 0.82344 0.74395 0.85796 0.88387 0.94033 0.92378 0.90994 0.91716 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.00 71.24 0.71 -1.48 16 2 C -0.11 -2.91 5.85 -20.10 -0.12 -3.03 16 3 C -0.09 -2.18 9.66 22.30 0.22 -1.97 16 4 C -0.11 -2.77 10.07 22.35 0.23 -2.55 16 5 C 0.02 0.55 7.42 22.99 0.17 0.72 16 6 O -0.20 -6.68 10.58 -8.97 -0.09 -6.78 16 7 C 0.01 0.41 11.89 66.85 0.79 1.20 16 8 C -0.17 -6.44 4.85 -18.59 -0.09 -6.53 16 9 C -0.05 -1.77 4.86 29.10 0.14 -1.62 16 10 C 0.44 22.23 7.62 87.66 0.67 22.90 16 11 O -0.63 -37.42 15.75 -3.06 -0.05 -37.47 16 12 N -0.47 -24.42 3.01 -658.89 -1.98 -26.40 16 13 C 0.12 5.22 8.44 127.77 1.08 6.30 16 14 C -0.34 -19.99 9.24 84.04 0.78 -19.21 16 15 H 0.07 4.16 7.45 -2.91 -0.02 4.14 16 16 C 0.00 -0.09 5.04 84.92 0.43 0.34 16 17 N -0.90 -48.10 10.83 21.66 0.23 -47.87 16 18 Si 0.99 43.20 29.57 68.60 2.03 45.23 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 C -0.14 -5.12 6.38 -20.21 -0.13 -5.25 16 23 C -0.10 -3.44 9.68 22.20 0.21 -3.23 16 24 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.06 1.33 8.07 -2.39 -0.02 1.31 16 26 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 27 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.24 5.38 8.06 -2.91 -0.02 5.35 16 30 H 0.12 3.59 7.41 -2.39 -0.02 3.57 16 31 H 0.10 3.41 8.11 -2.39 -0.02 3.39 16 32 H 0.04 1.87 7.82 -2.39 -0.02 1.85 16 33 H 0.06 2.70 6.80 -2.39 -0.02 2.68 16 34 H 0.07 2.42 6.61 -2.39 -0.02 2.40 16 35 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 36 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -75.88 311.09 6.31 -69.56 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.09 Total: 17.13 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.09 Total: -13.40 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.75 Total: -74.27 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.14 Total: -44.25 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.88 6.31 -69.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528320674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.887 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds