Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46921 * 2 1 4 4 O 1.34447 * 124.92466 * 270.00184 * 3 2 1 5 5 C 1.34807 * 110.88932 * 180.02562 * 4 3 2 6 6 C 1.38948 * 133.49667 * 179.97438 * 5 4 3 7 7 C 1.37846 * 119.81448 * 180.02562 * 6 5 4 8 8 C 1.38745 * 120.68985 * 0.02562 * 7 6 5 9 9 C 1.36734 * 120.41411 * 0.02562 * 8 7 6 10 10 C 1.39403 * 119.71798 * 359.97438 * 9 8 7 11 11 C 1.33993 * 124.91941 * 90.00294 * 3 2 1 12 12 C 1.50697 * 126.91149 * 0.02562 * 11 3 2 13 13 C 1.50705 * 109.47014 * 270.00087 * 12 11 3 14 14 O 1.21285 * 120.00143 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99634 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99424 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00436 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99661 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99969 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46970 * 89.99887 * 20 18 16 22 22 H 1.48500 * 109.47311 * 210.00184 * 20 18 16 23 23 H 1.48503 * 109.47077 * 330.00265 * 20 18 16 24 24 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46883 * 299.99857 * 1 2 3 26 26 H 1.09001 * 109.47152 * 59.99955 * 1 2 3 27 27 H 1.09002 * 109.46714 * 240.00392 * 2 1 3 28 28 H 1.08993 * 109.47285 * 120.00352 * 2 1 3 29 29 H 1.07992 * 120.08810 * 0.05221 * 6 5 4 30 30 H 1.08003 * 119.65310 * 180.27429 * 7 6 5 31 31 H 1.08004 * 119.79131 * 179.97438 * 8 7 6 32 32 H 1.08006 * 120.13634 * 179.97438 * 9 8 7 33 33 H 1.09007 * 109.47080 * 29.99919 * 12 11 3 34 34 H 1.09000 * 109.47876 * 149.99769 * 12 11 3 35 35 H 0.96996 * 120.00418 * 359.97438 * 15 13 12 36 36 H 0.97008 * 119.99488 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2888 2.1465 -1.1023 5 6 2.7253 3.3794 -0.7754 6 6 3.1166 4.4844 -1.5213 7 6 3.5243 5.6346 -0.8802 8 6 3.5491 5.7021 0.5054 9 6 3.1690 4.6256 1.2578 10 6 2.7537 3.4537 0.6272 11 6 2.2880 2.1439 1.0987 12 6 2.1320 1.7007 2.5305 13 6 0.7401 2.0260 3.0082 14 8 -0.0474 2.5652 2.2598 15 7 0.3706 1.7178 4.2672 16 6 -0.8958 2.0133 4.7016 17 1 -1.5970 2.4934 4.0351 18 6 -1.2770 1.6950 5.9993 19 7 -0.4235 1.1113 6.8104 20 14 -3.0021 2.0982 6.5915 21 1 -3.9026 0.9512 6.3107 22 1 -2.9753 2.3603 8.0529 23 1 -3.5001 3.3038 5.8815 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.1010 4.4424 -2.6003 30 1 3.8237 6.4935 -1.4625 31 1 3.8715 6.6105 0.9927 32 1 3.1905 4.6829 2.3361 33 1 2.2972 0.6254 2.5981 34 1 2.8605 2.2200 3.1532 35 1 1.0003 1.2863 4.8656 36 1 -0.6896 0.8895 7.7165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528331567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = -23.521118 kcal Electronic energy + Delta-G solvation = -20552.553346 eV Core-core repulsion = 17388.538010 eV Total energy + Delta-G solvation = -3164.015337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22175 -38.15775 -37.70535 -34.58290 -33.77581 -32.42050 -31.22902 -30.36052 -29.22685 -27.35006 -24.63477 -23.87778 -22.56359 -21.15328 -20.27038 -18.91256 -17.86350 -16.84153 -16.55248 -16.14452 -15.54528 -15.30439 -14.48651 -14.45316 -13.99926 -13.88682 -13.60958 -13.57422 -12.95989 -12.47949 -12.42047 -12.21076 -11.88505 -11.82363 -11.51640 -11.48963 -11.15089 -11.01898 -10.76261 -10.54792 -10.39685 -10.21775 -9.63018 -9.49598 -8.43609 -8.35756 -7.96163 -7.71281 -6.41584 -3.82273 1.14633 1.57338 2.61309 2.95446 3.17440 3.26294 3.32450 3.91412 3.92275 4.19171 4.61412 4.82947 5.06058 5.11490 5.15325 5.21405 5.29449 5.36213 5.42116 5.47632 5.62074 5.69026 5.78929 5.89051 5.98055 6.06282 6.18771 6.24528 6.34897 6.46084 6.50337 6.63850 6.65833 6.76749 6.91527 7.47264 7.55309 8.06005 8.61606 9.18218 9.54775 10.06628 10.76051 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.005009 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.261053 B = 5588.714548 C = 6312.744740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 C 0.036 3.964 4 O -0.194 6.194 5 C 0.049 3.951 6 C -0.111 4.111 7 C -0.103 4.103 8 C -0.141 4.141 9 C -0.065 4.065 10 C -0.106 4.106 11 C -0.132 4.132 12 C -0.065 4.065 13 C 0.444 3.556 14 O -0.582 6.582 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.928 3.072 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 1.365 -11.307 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.011 4.011 4 O -0.097 6.097 5 C 0.001 3.999 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.160 4.160 9 C -0.083 4.083 10 C -0.107 4.107 11 C -0.133 4.133 12 C -0.106 4.106 13 C 0.230 3.770 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.755 3.245 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.195 1.195 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.226 0.774 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.507 1.577 -11.867 14.686 hybrid contribution -0.495 0.041 0.923 1.048 sum 8.012 1.618 -10.943 13.659 Atomic orbital electron populations 1.21823 0.93188 1.01972 1.04109 1.20156 0.97198 0.87005 1.03545 1.21994 1.01026 0.94930 0.83116 1.83890 1.69981 1.21742 1.34040 1.19550 1.01051 0.85728 0.93531 1.19834 1.03649 0.90119 0.99313 1.20814 1.00033 0.96629 0.94613 1.20702 1.02765 0.98659 0.93828 1.20319 0.96698 0.91101 1.00162 1.19771 1.02994 0.95098 0.92865 1.20225 1.05806 0.92330 0.94961 1.19942 0.97758 1.01780 0.91107 1.19761 0.88710 0.85182 0.83360 1.90537 1.53883 1.46989 1.55272 1.41884 1.13972 1.53505 1.10673 1.19694 0.89506 1.36838 0.96763 0.88009 1.25239 0.99703 0.97021 0.95889 1.69614 1.35407 1.41760 1.07526 0.85888 0.81879 0.79008 0.77704 1.20410 1.20927 1.19471 0.92058 0.90147 0.92700 0.90462 0.88813 0.85534 0.85246 0.85689 0.85698 0.89385 0.89489 0.77442 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.89 37.16 0.37 -1.98 16 2 C -0.04 -0.59 6.23 -27.88 -0.17 -0.76 16 3 C 0.04 0.63 6.48 -35.80 -0.23 0.39 16 4 O -0.19 -3.41 10.58 3.92 0.04 -3.37 16 5 C 0.05 0.83 7.42 -38.47 -0.29 0.55 16 6 C -0.11 -1.53 10.07 -39.46 -0.40 -1.93 16 7 C -0.10 -1.26 10.01 -39.54 -0.40 -1.66 16 8 C -0.14 -1.87 9.98 -39.94 -0.40 -2.27 16 9 C -0.06 -1.04 10.05 -39.69 -0.40 -1.44 16 10 C -0.11 -1.93 6.38 -105.16 -0.67 -2.60 16 11 C -0.13 -2.43 4.84 -102.66 -0.50 -2.93 16 12 C -0.07 -1.19 6.00 -29.03 -0.17 -1.36 16 13 C 0.44 10.40 7.59 -10.98 -0.08 10.31 16 14 O -0.58 -15.74 14.68 5.55 0.08 -15.66 16 15 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 16 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 20 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 33 H 0.09 1.36 7.08 -51.93 -0.37 1.00 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -32.15 313.91 -7.40 -39.54 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.31 Total: 10.08 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.58 Total: -13.55 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.67 Total: -37.76 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.12 Total: -19.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.15 -7.40 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528331567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.024 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds