Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46921 * 2 1 4 4 O 1.34447 * 124.92466 * 270.00184 * 3 2 1 5 5 C 1.34807 * 110.88932 * 180.02562 * 4 3 2 6 6 C 1.38948 * 133.49667 * 179.97438 * 5 4 3 7 7 C 1.37846 * 119.81448 * 180.02562 * 6 5 4 8 8 C 1.38745 * 120.68985 * 0.02562 * 7 6 5 9 9 C 1.36734 * 120.41411 * 0.02562 * 8 7 6 10 10 C 1.39403 * 119.71798 * 359.97438 * 9 8 7 11 11 C 1.33993 * 124.91941 * 90.00294 * 3 2 1 12 12 C 1.50697 * 126.91149 * 0.02562 * 11 3 2 13 13 C 1.50705 * 109.47014 * 270.00087 * 12 11 3 14 14 O 1.21285 * 120.00143 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99634 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99424 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00436 * 359.97438 * 16 15 13 18 18 C 1.38954 * 119.99661 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99969 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46970 * 89.99887 * 20 18 16 22 22 H 1.48500 * 109.47311 * 210.00184 * 20 18 16 23 23 H 1.48503 * 109.47077 * 330.00265 * 20 18 16 24 24 H 1.08998 * 109.47054 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46883 * 299.99857 * 1 2 3 26 26 H 1.09001 * 109.47152 * 59.99955 * 1 2 3 27 27 H 1.09002 * 109.46714 * 240.00392 * 2 1 3 28 28 H 1.08993 * 109.47285 * 120.00352 * 2 1 3 29 29 H 1.07992 * 120.08810 * 0.05221 * 6 5 4 30 30 H 1.08003 * 119.65310 * 180.27429 * 7 6 5 31 31 H 1.08004 * 119.79131 * 179.97438 * 8 7 6 32 32 H 1.08006 * 120.13634 * 179.97438 * 9 8 7 33 33 H 1.09007 * 109.47080 * 29.99919 * 12 11 3 34 34 H 1.09000 * 109.47876 * 149.99769 * 12 11 3 35 35 H 0.96996 * 120.00418 * 359.97438 * 15 13 12 36 36 H 0.97008 * 119.99488 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2888 2.1465 -1.1023 5 6 2.7253 3.3794 -0.7754 6 6 3.1166 4.4844 -1.5213 7 6 3.5243 5.6346 -0.8802 8 6 3.5491 5.7021 0.5054 9 6 3.1690 4.6256 1.2578 10 6 2.7537 3.4537 0.6272 11 6 2.2880 2.1439 1.0987 12 6 2.1320 1.7007 2.5305 13 6 0.7401 2.0260 3.0082 14 8 -0.0474 2.5652 2.2598 15 7 0.3706 1.7178 4.2672 16 6 -0.8958 2.0133 4.7016 17 1 -1.5970 2.4934 4.0351 18 6 -1.2770 1.6950 5.9993 19 7 -0.4235 1.1113 6.8104 20 14 -3.0021 2.0982 6.5915 21 1 -3.9026 0.9512 6.3107 22 1 -2.9753 2.3603 8.0529 23 1 -3.5001 3.3038 5.8815 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.1010 4.4424 -2.6003 30 1 3.8237 6.4935 -1.4625 31 1 3.8715 6.6105 0.9927 32 1 3.1905 4.6829 2.3361 33 1 2.2972 0.6254 2.5981 34 1 2.8605 2.2200 3.1532 35 1 1.0003 1.2863 4.8656 36 1 -0.6896 0.8895 7.7165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528331567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = -42.969245 kcal Electronic energy + Delta-G solvation = -20553.396681 eV Core-core repulsion = 17388.538010 eV Total energy + Delta-G solvation = -3164.858671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.45592 -40.05451 -38.81842 -36.18114 -35.49807 -33.68734 -33.21896 -31.51543 -30.53230 -28.77062 -26.56402 -25.07596 -23.72705 -22.36030 -21.78366 -20.55055 -19.80929 -18.02386 -17.87084 -17.73456 -17.06313 -16.44347 -16.40797 -15.90197 -15.76028 -15.08288 -15.01639 -14.73717 -14.37190 -14.18686 -13.75258 -13.53762 -13.37538 -13.12494 -13.02278 -12.89081 -12.70148 -12.41351 -12.28036 -12.13299 -11.99587 -11.72249 -11.48127 -10.90275 -10.30699 -9.99865 -9.55014 -8.96191 -8.45680 -5.94211 -0.00582 0.42422 1.31836 1.37116 1.41415 1.53677 1.76598 2.06403 2.30666 2.78028 3.20730 3.34942 3.44264 3.67337 3.93905 4.05930 4.08492 4.16915 4.29979 4.35735 4.43122 4.53257 4.54917 4.62461 4.67417 4.76162 4.91712 4.99751 5.05919 5.30095 5.34630 5.38975 5.41799 5.51898 5.54785 5.80002 6.01063 6.24436 6.60814 7.13583 7.57086 8.13313 8.71465 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.005009 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.261053 B = 5588.714548 C = 6312.744740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C 0.033 3.967 4 O -0.203 6.203 5 C 0.020 3.980 6 C -0.114 4.114 7 C -0.093 4.093 8 C -0.134 4.134 9 C -0.094 4.094 10 C -0.139 4.139 11 C -0.165 4.165 12 C -0.052 4.052 13 C 0.447 3.553 14 O -0.621 6.621 15 N -0.572 5.572 16 C -0.331 4.331 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.919 5.919 20 Si 0.989 3.011 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.276 1.276 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.397 0.603 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 1.800 -12.095 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.014 4.014 4 O -0.105 6.105 5 C -0.027 4.027 6 C -0.132 4.132 7 C -0.110 4.110 8 C -0.151 4.151 9 C -0.113 4.113 10 C -0.140 4.140 11 C -0.166 4.166 12 C -0.092 4.092 13 C 0.235 3.765 14 O -0.508 6.508 15 N -0.209 5.209 16 C -0.460 4.460 17 H 0.094 0.906 18 C -0.210 4.210 19 N -0.560 5.560 20 Si 0.813 3.187 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.201 1.201 24 H 0.107 0.893 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.172 0.828 30 H 0.192 0.808 31 H 0.174 0.826 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.231 0.769 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.393 2.003 -12.646 15.880 hybrid contribution -0.713 -0.005 1.088 1.300 sum 8.681 1.998 -11.558 14.593 Atomic orbital electron populations 1.21742 0.94343 1.02933 1.01486 1.20326 0.95964 0.85704 1.05823 1.22541 0.99958 0.95993 0.82883 1.83865 1.70238 1.22211 1.34214 1.20102 1.02390 0.86394 0.93822 1.20353 1.02613 0.89425 1.00784 1.21367 0.97922 0.97244 0.94483 1.21152 1.00789 0.98669 0.94534 1.20538 0.98435 0.91803 1.00481 1.20100 1.04293 0.95732 0.93856 1.20405 1.07677 0.93408 0.95148 1.19836 0.94153 1.03701 0.91499 1.20644 0.90325 0.83275 0.82281 1.90504 1.55757 1.48366 1.56172 1.41919 1.13436 1.54138 1.11426 1.19611 0.90554 1.38540 0.97318 0.90638 1.25971 1.03258 0.96365 0.95404 1.69671 1.36787 1.41695 1.07871 0.84984 0.77509 0.78614 0.77572 1.19534 1.19482 1.20100 0.89274 0.94710 0.93245 0.87345 0.87307 0.82805 0.80846 0.82566 0.86098 0.86620 0.87887 0.76933 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.89 71.98 0.71 -3.82 16 2 C -0.04 -1.12 6.23 29.85 0.19 -0.93 16 3 C 0.03 1.16 6.48 24.72 0.16 1.32 16 4 O -0.20 -7.14 10.58 -8.89 -0.09 -7.23 16 5 C 0.02 0.67 7.42 22.99 0.17 0.84 16 6 C -0.11 -2.92 10.07 22.35 0.23 -2.69 16 7 C -0.09 -1.97 10.01 22.30 0.22 -1.75 16 8 C -0.13 -3.26 9.98 22.04 0.22 -3.04 16 9 C -0.09 -3.03 10.05 22.20 0.22 -2.81 16 10 C -0.14 -5.11 6.38 -20.21 -0.13 -5.24 16 11 C -0.16 -6.19 4.84 -18.59 -0.09 -6.28 16 12 C -0.05 -1.91 6.00 29.10 0.17 -1.73 16 13 C 0.45 21.66 7.59 87.66 0.67 22.32 16 14 O -0.62 -35.22 14.68 -3.04 -0.04 -35.26 16 15 N -0.57 -29.50 5.29 -306.98 -1.62 -31.13 16 16 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 17 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 18 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 19 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 20 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.03 1.38 6.99 -2.39 -0.02 1.36 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.11 2.58 7.06 -2.39 -0.02 2.56 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 33 H 0.12 3.52 7.08 -2.38 -0.02 3.50 16 34 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 36 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -72.44 313.91 4.95 -67.50 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.38 Total: 32.10 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.02 Total: -21.95 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.34 Total: -80.35 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.14 Total: -42.49 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.44 4.95 -67.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528331567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.530 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds