Wall clock time and date at job start Mon Mar 30 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48499 * 109.47079 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46962 * 120.00249 * 3 2 1 7 7 C 1.38809 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00451 * 198.63359 * 7 2 1 9 9 N 1.36939 * 119.99842 * 18.62408 * 7 2 1 10 10 C 1.46389 * 119.70489 * 27.99045 * 9 7 2 11 11 C 1.53217 * 109.52373 * 244.29430 * 10 9 7 12 12 S 1.81671 * 108.93655 * 301.72482 * 11 10 9 13 13 O 1.42103 * 108.65239 * 301.14875 * 12 11 10 14 14 O 1.42103 * 108.65736 * 169.84664 * 12 11 10 15 15 C 1.81599 * 101.38155 * 55.49728 * 12 11 10 16 16 C 1.52895 * 109.51560 * 184.57933 * 15 12 11 17 17 C 1.53020 * 109.47880 * 180.02562 * 16 15 12 18 18 C 1.52997 * 109.46890 * 59.86553 * 17 16 15 19 19 C 1.53001 * 109.49726 * 299.97392 * 18 17 16 20 20 C 1.52917 * 109.47661 * 64.34040 * 15 12 11 21 21 C 1.46408 * 119.71100 * 207.96134 * 9 7 2 22 22 H 0.97001 * 120.00680 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.45541 * 4.31999 * 10 9 7 24 24 H 1.09008 * 109.46029 * 124.28664 * 10 9 7 25 25 H 1.09005 * 109.55616 * 181.88686 * 11 10 9 26 26 H 1.09003 * 109.56476 * 61.56622 * 11 10 9 27 27 H 1.08998 * 109.47165 * 300.01646 * 16 15 12 28 28 H 1.09000 * 109.47257 * 60.01374 * 16 15 12 29 29 H 1.09003 * 109.46856 * 299.86998 * 17 16 15 30 30 H 1.09003 * 109.47526 * 179.87170 * 17 16 15 31 31 H 1.09004 * 109.46561 * 179.97438 * 18 17 16 32 32 H 1.08996 * 109.46228 * 59.98427 * 18 17 16 33 33 H 1.09009 * 109.46890 * 300.05261 * 19 18 17 34 34 H 1.08997 * 109.48064 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47229 * 300.03344 * 20 15 12 36 36 H 1.09001 * 109.47171 * 60.02802 * 20 15 12 37 37 H 1.09006 * 109.46442 * 355.78293 * 21 9 7 38 38 H 1.08995 * 109.46274 * 235.79857 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0478 -1.2267 0.2983 9 7 1.3794 -2.3568 -0.3798 10 6 0.2633 -2.2968 -1.3252 11 6 -1.0196 -2.7692 -0.6335 12 16 -0.7705 -4.4614 -0.0212 13 8 -0.4446 -5.2995 -1.1216 14 8 -1.8642 -4.8070 0.8176 15 6 0.7099 -4.2551 1.0101 16 6 1.1580 -5.6179 1.5389 17 6 2.4050 -5.4431 2.4083 18 6 2.0817 -4.5183 3.5835 19 6 1.6359 -3.1544 3.0524 20 6 0.3887 -3.3288 2.1837 21 6 1.8275 -3.6405 0.1633 22 1 -0.4851 0.8400 0.0004 23 1 0.1339 -1.2707 -1.6694 24 1 0.4747 -2.9420 -2.1780 25 1 -1.8443 -2.7566 -1.3462 26 1 -1.2479 -2.1084 0.2028 27 1 0.3583 -6.0572 2.1352 28 1 1.3888 -6.2750 0.7003 29 1 3.2056 -5.0059 1.8115 30 1 2.7231 -6.4144 2.7870 31 1 2.9699 -4.3941 4.2030 32 1 1.2810 -4.9553 4.1799 33 1 2.4365 -2.7177 2.4552 34 1 1.4061 -2.4957 3.8898 35 1 0.0718 -2.3576 1.8037 36 1 -0.4123 -3.7640 2.7814 37 1 2.7097 -3.4841 0.7842 38 1 2.0751 -4.3150 -0.6563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531487689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:09 Heat of formation + Delta-G solvation = -60.622361 kcal Electronic energy + Delta-G solvation = -21499.415360 eV Core-core repulsion = 18469.235144 eV Total energy + Delta-G solvation = -3030.180216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.97630 -36.51120 -35.74892 -35.31815 -32.01887 -30.98575 -30.28588 -29.58896 -25.77011 -23.87439 -22.49555 -22.20306 -20.84281 -18.78449 -17.74567 -17.14999 -16.28933 -15.49830 -15.09952 -14.91226 -14.39674 -14.25411 -13.95014 -13.52132 -13.45930 -13.03076 -12.49665 -12.10630 -11.81247 -11.79394 -11.64673 -11.44652 -11.35797 -11.30543 -11.10596 -10.91786 -10.88820 -10.67186 -10.57092 -10.28700 -10.07858 -9.87465 -9.77352 -9.46327 -8.97475 -8.65080 -7.04555 -6.03322 -3.49614 0.82559 3.26911 3.34088 3.35752 3.42426 4.24027 4.33471 4.69473 4.89593 5.02058 5.15695 5.19779 5.24405 5.43049 5.59840 5.66596 5.73588 5.81660 5.88552 5.94156 5.99395 6.10254 6.21648 6.29978 6.34592 6.38959 6.44588 6.48532 6.52787 6.67836 6.91920 6.97583 7.10338 7.26908 7.61428 8.19449 8.93729 9.55591 10.03803 11.04002 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.009625 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.015485 B = 2908.373552 C = 3710.694853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.010 3.990 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.591 5.591 10 C 0.175 3.825 11 C -0.587 4.587 12 S 2.393 3.607 13 O -0.962 6.962 14 O -0.968 6.968 15 C -0.535 4.535 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.091 4.091 21 C 0.162 3.838 22 H 0.259 0.741 23 H 0.112 0.888 24 H 0.028 0.972 25 H 0.110 0.890 26 H 0.152 0.848 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -6.083 3.312 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.311 5.311 10 C 0.048 3.952 11 C -0.722 4.722 12 S 2.582 3.418 13 O -0.959 6.959 14 O -0.965 6.965 15 C -0.630 4.630 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.157 4.157 19 C -0.143 4.143 20 C -0.129 4.129 21 C 0.034 3.966 22 H 0.069 0.931 23 H 0.130 0.870 24 H 0.046 0.954 25 H 0.128 0.872 26 H 0.170 0.830 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.674 -6.722 3.106 7.592 hybrid contribution 0.552 1.555 0.307 1.678 sum 2.226 -5.168 3.412 6.581 Atomic orbital electron populations 1.69912 1.05250 1.26211 1.52677 1.25007 0.95253 0.98522 1.00128 0.86356 0.79003 0.83078 0.78227 1.20942 1.21654 1.20829 1.19122 0.93402 0.84511 1.41798 0.91098 1.44178 1.37107 1.02168 1.47678 1.20477 0.82156 1.03509 0.89105 1.30496 1.08578 1.20054 1.13060 1.08574 0.77245 0.79454 0.76500 1.93479 1.84886 1.65400 1.52149 1.93477 1.51060 1.83430 1.68582 1.30151 1.18866 1.02963 1.11030 1.21322 0.99283 0.93270 0.99924 1.21429 0.97244 0.99138 0.96809 1.21575 1.00436 0.96549 0.97186 1.21376 0.98522 0.95704 0.98735 1.21276 0.98116 0.99844 0.93660 1.21030 0.94240 0.87387 0.93931 0.93121 0.86968 0.95368 0.87150 0.82960 0.91441 0.90956 0.91228 0.92313 0.92546 0.92559 0.90368 0.92498 0.87941 0.92325 0.89780 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.21 10.08 55.49 0.56 -21.65 16 2 C 0.01 0.25 4.84 -17.43 -0.08 0.16 16 3 Si 0.90 19.71 29.59 -169.99 -5.03 14.68 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.26 -6.09 9.43 -15.06 -0.14 -6.23 16 8 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -12.74 2.13 -173.20 -0.37 -13.11 16 10 C 0.18 3.74 5.33 -3.99 -0.02 3.72 16 11 C -0.59 -11.63 5.92 37.27 0.22 -11.41 16 12 S 2.39 46.68 4.19 -107.50 -0.45 46.23 16 13 O -0.96 -20.50 18.02 -57.81 -1.04 -21.54 16 14 O -0.97 -20.80 17.76 -57.81 -1.03 -21.83 16 15 C -0.54 -9.43 0.55 -90.66 -0.05 -9.48 16 16 C -0.10 -1.50 4.74 -26.77 -0.13 -1.63 16 17 C -0.11 -1.42 5.65 -26.72 -0.15 -1.57 16 18 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 19 C -0.11 -1.68 5.65 -26.73 -0.15 -1.83 16 20 C -0.09 -1.62 4.36 -26.78 -0.12 -1.74 16 21 C 0.16 3.02 4.30 -4.04 -0.02 3.00 16 22 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 23 H 0.11 2.63 5.85 -51.93 -0.30 2.32 16 24 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 25 H 0.11 1.95 8.14 -51.92 -0.42 1.52 16 26 H 0.15 3.24 6.18 -51.93 -0.32 2.92 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.91 6.50 -51.93 -0.34 0.58 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.35 6.41 -51.92 -0.33 1.02 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.12 6.28 -51.93 -0.33 1.80 16 36 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 37 H 0.08 1.49 4.59 -51.93 -0.24 1.25 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 293.05 15.07 4.42 4.42 Total: -1.00 -27.63 293.05 -9.37 -37.00 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.63 Total: 4.57 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -0.80 Total: -28.77 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.19 Total: -34.76 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -2.07 Total: -43.37 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.45 Total: 46.23 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.63 -9.37 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531487689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.622 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds