Wall clock time and date at job start Mon Mar 30 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48499 * 109.47079 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47323 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46962 * 120.00249 * 3 2 1 7 7 C 1.38809 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00451 * 198.63359 * 7 2 1 9 9 N 1.36939 * 119.99842 * 18.62408 * 7 2 1 10 10 C 1.46389 * 119.70489 * 27.99045 * 9 7 2 11 11 C 1.53217 * 109.52373 * 244.29430 * 10 9 7 12 12 S 1.81671 * 108.93655 * 301.72482 * 11 10 9 13 13 O 1.42103 * 108.65239 * 301.14875 * 12 11 10 14 14 O 1.42103 * 108.65736 * 169.84664 * 12 11 10 15 15 C 1.81599 * 101.38155 * 55.49728 * 12 11 10 16 16 C 1.52895 * 109.51560 * 184.57933 * 15 12 11 17 17 C 1.53020 * 109.47880 * 180.02562 * 16 15 12 18 18 C 1.52997 * 109.46890 * 59.86553 * 17 16 15 19 19 C 1.53001 * 109.49726 * 299.97392 * 18 17 16 20 20 C 1.52917 * 109.47661 * 64.34040 * 15 12 11 21 21 C 1.46408 * 119.71100 * 207.96134 * 9 7 2 22 22 H 0.97001 * 120.00680 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.45541 * 4.31999 * 10 9 7 24 24 H 1.09008 * 109.46029 * 124.28664 * 10 9 7 25 25 H 1.09005 * 109.55616 * 181.88686 * 11 10 9 26 26 H 1.09003 * 109.56476 * 61.56622 * 11 10 9 27 27 H 1.08998 * 109.47165 * 300.01646 * 16 15 12 28 28 H 1.09000 * 109.47257 * 60.01374 * 16 15 12 29 29 H 1.09003 * 109.46856 * 299.86998 * 17 16 15 30 30 H 1.09003 * 109.47526 * 179.87170 * 17 16 15 31 31 H 1.09004 * 109.46561 * 179.97438 * 18 17 16 32 32 H 1.08996 * 109.46228 * 59.98427 * 18 17 16 33 33 H 1.09009 * 109.46890 * 300.05261 * 19 18 17 34 34 H 1.08997 * 109.48064 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47229 * 300.03344 * 20 15 12 36 36 H 1.09001 * 109.47171 * 60.02802 * 20 15 12 37 37 H 1.09006 * 109.46442 * 355.78293 * 21 9 7 38 38 H 1.08995 * 109.46274 * 235.79857 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0478 -1.2267 0.2983 9 7 1.3794 -2.3568 -0.3798 10 6 0.2633 -2.2968 -1.3252 11 6 -1.0196 -2.7692 -0.6335 12 16 -0.7705 -4.4614 -0.0212 13 8 -0.4446 -5.2995 -1.1216 14 8 -1.8642 -4.8070 0.8176 15 6 0.7099 -4.2551 1.0101 16 6 1.1580 -5.6179 1.5389 17 6 2.4050 -5.4431 2.4083 18 6 2.0817 -4.5183 3.5835 19 6 1.6359 -3.1544 3.0524 20 6 0.3887 -3.3288 2.1837 21 6 1.8275 -3.6405 0.1633 22 1 -0.4851 0.8400 0.0004 23 1 0.1339 -1.2707 -1.6694 24 1 0.4747 -2.9420 -2.1780 25 1 -1.8443 -2.7566 -1.3462 26 1 -1.2479 -2.1084 0.2028 27 1 0.3583 -6.0572 2.1352 28 1 1.3888 -6.2750 0.7003 29 1 3.2056 -5.0059 1.8115 30 1 2.7231 -6.4144 2.7870 31 1 2.9699 -4.3941 4.2030 32 1 1.2810 -4.9553 4.1799 33 1 2.4365 -2.7177 2.4552 34 1 1.4061 -2.4957 3.8898 35 1 0.0718 -2.3576 1.8037 36 1 -0.4123 -3.7640 2.7814 37 1 2.7097 -3.4841 0.7842 38 1 2.0751 -4.3150 -0.6563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531487689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:08 Heat of formation + Delta-G solvation = -77.368430 kcal Electronic energy + Delta-G solvation = -21500.141524 eV Core-core repulsion = 18469.235144 eV Total energy + Delta-G solvation = -3030.906380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35580 -38.14259 -37.34764 -36.97073 -33.68053 -32.45270 -31.55570 -31.19463 -27.36462 -25.56087 -23.83025 -23.49065 -22.42075 -20.18397 -19.30885 -18.80954 -17.79984 -17.18362 -16.73566 -16.53489 -15.81461 -15.76909 -15.37887 -15.07855 -14.89474 -14.37838 -13.92290 -13.56620 -13.36713 -13.27896 -13.12601 -13.06756 -12.99349 -12.88456 -12.75000 -12.61605 -12.25694 -12.12438 -11.95386 -11.85358 -11.78845 -11.33639 -11.06873 -10.87562 -10.48124 -10.39362 -8.80146 -7.86409 -5.33289 -0.74370 1.51885 1.56562 1.59698 1.86004 2.52755 2.72355 3.11960 3.34904 3.40517 3.65889 3.76002 3.97639 4.15623 4.22279 4.33787 4.39272 4.44604 4.54111 4.66938 4.68585 4.76513 4.87227 4.91912 4.99678 5.12175 5.16825 5.32688 5.34606 5.37503 5.42764 5.50946 5.58404 5.70485 5.75091 6.39529 7.12440 7.78827 8.24408 9.18697 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.009625 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.015485 B = 2908.373552 C = 3710.694853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.029 4.029 3 Si 0.953 3.047 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.074 0.926 9 N -0.601 5.601 10 C 0.174 3.826 11 C -0.588 4.588 12 S 2.400 3.600 13 O -0.979 6.979 14 O -0.989 6.989 15 C -0.518 4.518 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.103 4.103 20 C -0.090 4.090 21 C 0.161 3.839 22 H 0.251 0.749 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -7.385 4.271 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.226 4.226 3 Si 0.783 3.217 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.387 4.387 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.722 4.722 12 S 2.592 3.408 13 O -0.976 6.976 14 O -0.986 6.986 15 C -0.615 4.615 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.141 4.141 20 C -0.128 4.128 21 C 0.034 3.966 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.056 0.944 25 H 0.144 0.856 26 H 0.155 0.845 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.082 -8.040 4.047 9.514 hybrid contribution 0.125 1.937 0.007 1.941 sum 3.207 -6.102 4.055 7.998 Atomic orbital electron populations 1.70032 1.05991 1.25912 1.53968 1.25505 0.95778 1.00499 1.00863 0.85578 0.77732 0.80444 0.77956 1.21153 1.22787 1.20511 1.19302 0.93526 0.85236 1.40639 0.90868 1.44271 1.37065 1.02783 1.48007 1.20393 0.82899 1.02405 0.89630 1.30414 1.08569 1.20336 1.12878 1.08292 0.77666 0.78620 0.76236 1.93450 1.85249 1.65748 1.53172 1.93445 1.52712 1.83611 1.68841 1.29954 1.16701 1.04719 1.10098 1.21481 1.00657 0.91376 1.00841 1.21463 0.95922 1.00649 0.96263 1.21561 1.01543 0.94652 0.97557 1.21353 0.96879 0.97678 0.98197 1.21226 0.99365 0.98199 0.94029 1.21139 0.94767 0.86236 0.94485 0.93917 0.89267 0.94438 0.85637 0.84543 0.90829 0.90051 0.91076 0.89424 0.90463 0.91841 0.91758 0.92342 0.91154 0.91953 0.88525 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.18 10.08 21.65 0.22 -45.96 16 2 C -0.03 -1.42 4.84 84.86 0.41 -1.01 16 3 Si 0.95 40.66 29.59 68.60 2.03 42.69 16 4 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -11.98 9.43 84.03 0.79 -11.19 16 8 H 0.07 3.33 7.88 -2.91 -0.02 3.31 16 9 N -0.60 -25.63 2.13 -701.88 -1.50 -27.12 16 10 C 0.17 7.49 5.33 86.47 0.46 7.95 16 11 C -0.59 -23.54 5.92 72.05 0.43 -23.11 16 12 S 2.40 92.14 4.19 -56.49 -0.24 91.90 16 13 O -0.98 -40.70 18.02 -127.39 -2.30 -43.00 16 14 O -0.99 -42.01 17.76 -127.39 -2.26 -44.27 16 15 C -0.52 -17.46 0.55 -10.82 -0.01 -17.47 16 16 C -0.10 -2.86 4.74 30.57 0.14 -2.72 16 17 C -0.10 -2.33 5.65 30.60 0.17 -2.16 16 18 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 19 C -0.10 -3.08 5.65 30.59 0.17 -2.91 16 20 C -0.09 -3.12 4.36 30.57 0.13 -2.99 16 21 C 0.16 5.73 4.30 86.43 0.37 6.10 16 22 H 0.25 12.68 8.31 -92.71 -0.77 11.91 16 23 H 0.09 4.27 5.85 -2.38 -0.01 4.25 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.13 4.48 8.14 -2.39 -0.02 4.46 16 26 H 0.14 5.99 6.18 -2.39 -0.01 5.97 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.59 6.50 -2.39 -0.02 1.57 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 2.11 6.41 -2.38 -0.02 2.09 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.94 6.28 -2.39 -0.01 2.93 16 36 H 0.06 2.10 7.97 -2.39 -0.02 2.08 16 37 H 0.10 3.22 4.59 -2.38 -0.01 3.21 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -57.78 293.05 0.27 -57.51 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.05 Total: 20.25 kcal Atomic # 6 Polarization: -55.27 SS G_CDS: 3.26 Total: -52.00 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.28 Total: -73.08 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: -4.56 Total: -87.27 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 92.14 SS G_CDS: -0.24 Total: 91.90 kcal Total: -57.78 0.27 -57.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531487689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.860 kcal (2) G-P(sol) polarization free energy of solvation -57.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds