Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00378 * 2 1 4 4 H 1.48495 * 109.47558 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46877 * 299.99998 * 3 2 1 6 6 H 1.48499 * 109.47024 * 59.99410 * 3 2 1 7 7 C 1.37878 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00104 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47028 * 179.97438 * 9 7 2 11 11 O 1.42103 * 110.54621 * 62.12645 * 10 9 7 12 12 O 1.42098 * 110.54567 * 285.37515 * 10 9 7 13 13 N 1.65607 * 104.44816 * 173.75119 * 10 9 7 14 14 C 1.46504 * 119.99797 * 277.37995 * 13 10 9 15 15 C 1.52997 * 117.49789 * 194.89069 * 14 13 10 16 16 C 1.52998 * 117.49461 * 126.23083 * 14 13 10 17 17 C 1.46495 * 120.00020 * 97.37920 * 13 10 9 18 18 C 1.54268 * 110.03337 * 64.60820 * 17 13 10 19 19 C 1.54964 * 104.16236 * 217.13494 * 18 17 13 20 20 C 1.54895 * 102.77571 * 37.89026 * 19 18 17 21 21 C 1.53876 * 110.03411 * 307.39427 * 17 13 10 22 22 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46709 * 59.99937 * 9 7 2 24 24 H 1.08990 * 109.46722 * 299.99865 * 9 7 2 25 25 H 1.08998 * 115.54679 * 340.56426 * 14 13 10 26 26 H 1.09004 * 117.49599 * 0.02562 * 15 14 13 27 27 H 1.09000 * 117.49717 * 145.01926 * 15 14 13 28 28 H 1.09002 * 117.49776 * 214.97319 * 16 14 13 29 29 H 1.09001 * 117.50358 * 0.02562 * 16 14 13 30 30 H 1.09002 * 110.01635 * 185.99745 * 17 13 10 31 31 H 1.09008 * 110.48725 * 335.78518 * 18 17 13 32 32 H 1.09005 * 110.48783 * 98.42189 * 18 17 13 33 33 H 1.08996 * 110.71690 * 279.57493 * 19 18 17 34 34 H 1.08997 * 110.92007 * 156.29252 * 19 18 17 35 35 H 1.08997 * 110.48477 * 203.40808 * 20 19 18 36 36 H 1.08995 * 110.60021 * 80.81627 * 20 19 18 37 37 H 1.08998 * 110.02661 * 238.57198 * 21 17 13 38 38 H 1.09001 * 110.03274 * 359.94552 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.2267 -3.8528 1.1768 12 8 3.0219 -4.0277 -1.2824 13 7 1.4866 -5.2280 0.1751 14 6 1.0402 -5.6424 1.5075 15 6 0.4797 -7.0582 1.6561 16 6 -0.4609 -5.8521 1.7161 17 6 1.0986 -6.0078 -1.0028 18 6 2.3481 -6.6296 -1.6600 19 6 2.0577 -6.5473 -3.1800 20 6 1.3412 -5.1810 -3.3184 21 6 0.4584 -5.0874 -2.0568 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8902 25 1 1.6126 -5.2375 2.3420 26 1 0.4435 -7.6815 0.7626 27 1 0.6831 -7.5847 2.5886 28 1 -0.8760 -5.5857 2.6881 29 1 -1.1164 -5.6822 0.8619 30 1 0.3977 -6.7921 -0.7168 31 1 3.2381 -6.0520 -1.4099 32 1 2.4661 -7.6676 -1.3490 33 1 1.4024 -7.3605 -3.4919 34 1 2.9841 -6.5575 -3.7543 35 1 0.7252 -5.1627 -4.2173 36 1 2.0667 -4.3678 -3.3375 37 1 -0.5529 -5.4256 -2.2828 38 1 0.4355 -4.0607 -1.6915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571136294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -50.654178 kcal Electronic energy + Delta-G solvation = -20663.619397 eV Core-core repulsion = 17633.871434 eV Total energy + Delta-G solvation = -3029.747963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.94014 -36.96385 -35.64988 -34.92881 -33.36266 -32.02547 -29.22951 -28.23549 -27.11255 -23.55113 -22.26647 -21.53790 -20.64311 -20.19695 -17.86856 -17.22544 -16.70151 -16.18474 -15.50110 -14.91053 -14.59920 -14.35835 -14.24468 -14.10787 -13.04631 -12.74504 -12.51653 -12.26130 -12.04764 -11.52218 -11.46919 -11.41566 -11.29632 -11.04087 -11.03263 -10.93228 -10.74577 -10.71407 -10.67121 -10.61102 -10.32428 -10.08710 -9.96502 -9.71456 -9.22924 -8.71440 -8.21787 -6.33413 -4.43889 1.30402 3.19071 3.26126 3.33148 3.40329 4.01000 4.23536 4.70830 4.77348 4.81271 5.00023 5.00953 5.05516 5.15661 5.19318 5.31142 5.43168 5.58331 5.70984 5.81353 5.88072 5.90958 6.00710 6.04425 6.11906 6.20907 6.24025 6.35744 6.41068 6.55680 6.58967 6.75961 6.86964 6.89612 7.16503 7.44723 7.75779 8.58518 9.23642 10.78159 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.007210 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.044185 B = 3882.350398 C = 4390.220196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.069 0.931 9 C -0.421 4.421 10 S 2.582 3.418 11 O -0.981 6.981 12 O -0.966 6.966 13 N -0.976 5.976 14 C 0.089 3.911 15 C -0.189 4.189 16 C -0.196 4.196 17 C 0.154 3.846 18 C -0.142 4.142 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.151 4.151 22 H 0.267 0.733 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -12.742 -1.458 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.087 0.913 9 C -0.557 4.557 10 S 2.684 3.316 11 O -0.972 6.972 12 O -0.957 6.957 13 N -0.807 5.807 14 C -0.019 4.019 15 C -0.228 4.228 16 C -0.236 4.236 17 C 0.048 3.952 18 C -0.181 4.181 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.189 4.189 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.157 0.843 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.043 -12.681 -1.538 12.817 hybrid contribution -0.510 1.023 0.131 1.150 sum -1.552 -11.659 -1.407 11.845 Atomic orbital electron populations 1.69961 1.06228 1.27515 1.47642 1.24918 0.94994 0.99555 0.93493 0.86348 0.80458 0.82269 0.78088 1.18981 1.20319 1.20315 1.20374 0.92715 0.88789 1.55406 0.91308 1.27903 1.10499 1.10636 1.06634 1.06067 0.76695 0.75045 0.73789 1.93452 1.67059 1.86517 1.50139 1.93459 1.75578 1.85265 1.41382 1.57635 1.69942 1.43586 1.09515 1.21453 0.94976 0.99064 0.86372 1.23301 1.04854 0.91386 1.03221 1.23426 0.94226 1.02392 1.03540 1.21430 0.96336 0.93559 0.83907 1.22994 0.99425 1.00155 0.95530 1.22321 0.99989 0.97150 0.95729 1.22352 0.98889 0.98703 0.95976 1.22779 0.99255 1.00646 0.96253 0.92302 0.89497 0.89857 0.84320 0.88457 0.88415 0.88255 0.88430 0.89425 0.89106 0.92306 0.92418 0.91671 0.92492 0.89008 0.91214 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 13.29 55.43 0.74 -23.98 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.77 9.13 -34.44 -0.31 -15.08 16 8 H 0.07 1.89 7.71 -52.48 -0.40 1.48 16 9 C -0.42 -10.25 5.55 36.01 0.20 -10.05 16 10 S 2.58 55.74 4.40 -107.50 -0.47 55.27 16 11 O -0.98 -23.74 16.95 -57.54 -0.98 -24.72 16 12 O -0.97 -21.48 12.12 -57.54 -0.70 -22.17 16 13 N -0.98 -16.77 2.96 -99.12 -0.29 -17.06 16 14 C 0.09 1.35 6.41 -67.93 -0.44 0.92 16 15 C -0.19 -2.22 9.75 -26.69 -0.26 -2.48 16 16 C -0.20 -2.50 10.10 -26.69 -0.27 -2.77 16 17 C 0.15 2.31 2.92 -66.81 -0.20 2.12 16 18 C -0.14 -2.12 5.98 -25.03 -0.15 -2.27 16 19 C -0.11 -1.53 6.91 -24.69 -0.17 -1.71 16 20 C -0.12 -1.84 6.28 -25.07 -0.16 -2.00 16 21 C -0.15 -2.34 5.80 -25.61 -0.15 -2.49 16 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 23 H 0.09 2.11 6.06 -51.93 -0.31 1.79 16 24 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 25 H 0.14 2.19 7.38 -51.93 -0.38 1.80 16 26 H 0.10 1.07 6.20 -51.93 -0.32 0.75 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.11 5.56 -51.93 -0.29 0.82 16 31 H 0.09 1.60 5.75 -51.92 -0.30 1.31 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.64 6.75 -51.93 -0.35 1.28 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.32 4.46 -51.93 -0.23 1.09 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -31.19 306.32 -9.64 -40.83 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.53 Total: 5.04 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.00 Total: -33.79 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.44 Total: -41.04 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.67 Total: -46.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -0.47 Total: 55.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.19 -9.64 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571136294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.824 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds