Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00378 * 2 1 4 4 H 1.48495 * 109.47558 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46877 * 299.99998 * 3 2 1 6 6 H 1.48499 * 109.47024 * 59.99410 * 3 2 1 7 7 C 1.37878 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00104 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47028 * 179.97438 * 9 7 2 11 11 O 1.42103 * 110.54621 * 62.12645 * 10 9 7 12 12 O 1.42098 * 110.54567 * 285.37515 * 10 9 7 13 13 N 1.65607 * 104.44816 * 173.75119 * 10 9 7 14 14 C 1.46504 * 119.99797 * 277.37995 * 13 10 9 15 15 C 1.52997 * 117.49789 * 194.89069 * 14 13 10 16 16 C 1.52998 * 117.49461 * 126.23083 * 14 13 10 17 17 C 1.46495 * 120.00020 * 97.37920 * 13 10 9 18 18 C 1.54268 * 110.03337 * 64.60820 * 17 13 10 19 19 C 1.54964 * 104.16236 * 217.13494 * 18 17 13 20 20 C 1.54895 * 102.77571 * 37.89026 * 19 18 17 21 21 C 1.53876 * 110.03411 * 307.39427 * 17 13 10 22 22 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46709 * 59.99937 * 9 7 2 24 24 H 1.08990 * 109.46722 * 299.99865 * 9 7 2 25 25 H 1.08998 * 115.54679 * 340.56426 * 14 13 10 26 26 H 1.09004 * 117.49599 * 0.02562 * 15 14 13 27 27 H 1.09000 * 117.49717 * 145.01926 * 15 14 13 28 28 H 1.09002 * 117.49776 * 214.97319 * 16 14 13 29 29 H 1.09001 * 117.50358 * 0.02562 * 16 14 13 30 30 H 1.09002 * 110.01635 * 185.99745 * 17 13 10 31 31 H 1.09008 * 110.48725 * 335.78518 * 18 17 13 32 32 H 1.09005 * 110.48783 * 98.42189 * 18 17 13 33 33 H 1.08996 * 110.71690 * 279.57493 * 19 18 17 34 34 H 1.08997 * 110.92007 * 156.29252 * 19 18 17 35 35 H 1.08997 * 110.48477 * 203.40808 * 20 19 18 36 36 H 1.08995 * 110.60021 * 80.81627 * 20 19 18 37 37 H 1.08998 * 110.02661 * 238.57198 * 21 17 13 38 38 H 1.09001 * 110.03274 * 359.94552 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.2267 -3.8528 1.1768 12 8 3.0219 -4.0277 -1.2824 13 7 1.4866 -5.2280 0.1751 14 6 1.0402 -5.6424 1.5075 15 6 0.4797 -7.0582 1.6561 16 6 -0.4609 -5.8521 1.7161 17 6 1.0986 -6.0078 -1.0028 18 6 2.3481 -6.6296 -1.6600 19 6 2.0577 -6.5473 -3.1800 20 6 1.3412 -5.1810 -3.3184 21 6 0.4584 -5.0874 -2.0568 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8902 25 1 1.6126 -5.2375 2.3420 26 1 0.4435 -7.6815 0.7626 27 1 0.6831 -7.5847 2.5886 28 1 -0.8760 -5.5857 2.6881 29 1 -1.1164 -5.6822 0.8619 30 1 0.3977 -6.7921 -0.7168 31 1 3.2381 -6.0520 -1.4099 32 1 2.4661 -7.6676 -1.3490 33 1 1.4024 -7.3605 -3.4919 34 1 2.9841 -6.5575 -3.7543 35 1 0.7252 -5.1627 -4.2173 36 1 2.0667 -4.3678 -3.3375 37 1 -0.5529 -5.4256 -2.2828 38 1 0.4355 -4.0607 -1.6915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571136294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -70.741483 kcal Electronic energy + Delta-G solvation = -20664.490448 eV Core-core repulsion = 17633.871434 eV Total energy + Delta-G solvation = -3030.619014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14238 -38.37614 -37.18805 -36.70784 -35.44001 -33.27020 -31.16456 -29.50399 -28.31530 -25.58606 -23.24295 -22.72399 -21.93385 -21.40801 -19.51025 -18.85270 -18.34210 -17.66541 -17.34486 -16.28077 -16.19420 -15.93795 -15.60460 -15.29984 -14.52454 -14.37624 -14.02151 -13.88031 -13.41537 -13.36757 -13.03121 -12.90569 -12.81489 -12.79099 -12.58725 -12.46516 -12.27387 -11.97129 -11.86055 -11.79468 -11.70853 -11.41663 -11.30991 -11.22965 -10.93031 -10.78964 -9.52188 -8.43075 -6.61456 -0.42649 1.34508 1.34848 1.49334 1.88178 2.28974 2.89797 2.93773 3.06426 3.36777 3.60213 3.79778 3.84659 3.95087 4.11017 4.17765 4.21619 4.49244 4.55080 4.68151 4.70597 4.75606 4.79980 4.86077 4.91897 5.03688 5.10859 5.13427 5.22415 5.29049 5.30747 5.35026 5.38157 5.43744 5.69336 5.71937 5.90850 6.49096 7.09847 8.69396 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.007210 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.044185 B = 3882.350398 C = 4390.220196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.567 4.567 8 H 0.059 0.941 9 C -0.433 4.433 10 S 2.613 3.387 11 O -1.011 7.011 12 O -0.976 6.976 13 N -0.968 5.968 14 C 0.043 3.957 15 C -0.154 4.154 16 C -0.191 4.191 17 C 0.150 3.850 18 C -0.148 4.148 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.158 4.158 22 H 0.274 0.726 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -14.736 -1.699 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.605 4.605 8 H 0.078 0.922 9 C -0.566 4.566 10 S 2.713 3.287 11 O -1.001 7.001 12 O -0.966 6.966 13 N -0.802 5.802 14 C -0.064 4.064 15 C -0.193 4.193 16 C -0.230 4.230 17 C 0.045 3.955 18 C -0.187 4.187 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.196 4.196 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.899 -14.653 -1.777 14.882 hybrid contribution -0.293 1.552 0.206 1.593 sum -2.193 -13.101 -1.571 13.376 Atomic orbital electron populations 1.70032 1.07439 1.28735 1.47975 1.25811 0.95965 1.03021 0.92838 0.85458 0.79114 0.78135 0.78982 1.18871 1.18922 1.18981 1.20761 0.92775 0.90921 1.56088 0.92235 1.27972 1.11161 1.11830 1.05613 1.04833 0.76078 0.74943 0.72861 1.93404 1.68048 1.87194 1.51467 1.93453 1.75934 1.85473 1.41747 1.57205 1.69758 1.41800 1.11392 1.21680 0.96932 1.02974 0.84804 1.23440 1.01227 0.89703 1.04949 1.23504 0.92498 1.02771 1.04226 1.21748 0.97162 0.93796 0.82817 1.23032 0.97781 1.01165 0.96709 1.22340 1.00500 0.96909 0.94726 1.22361 0.98572 0.98736 0.96875 1.22873 1.01080 0.99100 0.96571 0.91726 0.90158 0.91028 0.85882 0.86864 0.86177 0.87134 0.88328 0.85878 0.92532 0.89428 0.89000 0.91686 0.90387 0.92765 0.88339 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.17 13.29 21.45 0.28 -51.88 16 2 C 0.03 1.52 5.46 84.66 0.46 1.98 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.57 -32.72 9.13 25.60 0.23 -32.49 16 8 H 0.06 3.43 7.71 -2.91 -0.02 3.41 16 9 C -0.43 -22.17 5.55 71.24 0.40 -21.77 16 10 S 2.61 117.19 4.40 -56.49 -0.25 116.94 16 11 O -1.01 -50.82 16.95 -127.65 -2.16 -52.98 16 12 O -0.98 -45.13 12.12 -127.65 -1.55 -46.68 16 13 N -0.97 -32.91 2.96 -467.51 -1.38 -34.29 16 14 C 0.04 1.26 6.41 44.99 0.29 1.55 16 15 C -0.15 -3.06 9.75 30.62 0.30 -2.76 16 16 C -0.19 -4.41 10.10 30.62 0.31 -4.10 16 17 C 0.15 4.19 2.92 45.72 0.13 4.32 16 18 C -0.15 -4.10 5.98 31.70 0.19 -3.91 16 19 C -0.11 -2.62 6.91 31.91 0.22 -2.40 16 20 C -0.13 -3.76 6.28 31.67 0.20 -3.56 16 21 C -0.16 -4.72 5.80 31.32 0.18 -4.54 16 22 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 23 H 0.08 4.14 6.06 -2.39 -0.01 4.13 16 24 H 0.07 3.72 8.14 -2.40 -0.02 3.70 16 25 H 0.12 3.95 7.38 -2.39 -0.02 3.93 16 26 H 0.11 1.91 6.20 -2.38 -0.01 1.89 16 27 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.12 2.59 5.56 -2.39 -0.01 2.57 16 31 H 0.06 1.98 5.75 -2.38 -0.01 1.96 16 32 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.99 6.75 -2.39 -0.02 1.98 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.56 4.46 -2.39 -0.01 1.55 16 Total: -1.00 -69.81 306.32 0.93 -68.88 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.05 Total: 22.19 kcal Atomic # 6 Polarization: -70.58 SS G_CDS: 2.91 Total: -67.67 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.10 Total: -86.18 kcal Atomic # 8 Polarization: -95.95 SS G_CDS: -3.71 Total: -99.66 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 117.19 SS G_CDS: -0.25 Total: 116.94 kcal Total: -69.81 0.93 -68.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571136294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.863 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds