Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48494 * 109.47653 * 240.00119 * 3 2 1 5 5 H 1.48508 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46923 * 119.99764 * 3 2 1 7 7 C 1.38804 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00284 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47086 * 125.62621 * 0.02919 * 9 7 2 11 11 C 1.54450 * 107.28597 * 180.74564 * 10 9 7 12 12 C 1.54370 * 102.89723 * 21.45722 * 11 10 9 13 13 C 1.47582 * 125.62783 * 179.72242 * 9 7 2 14 14 C 1.52651 * 110.21461 * 207.89757 * 12 11 10 15 15 C 1.51956 * 107.27956 * 179.90667 * 14 12 11 16 16 O 1.21297 * 121.72562 * 219.04912 * 15 14 12 17 17 C 1.47363 * 116.54586 * 39.02257 * 15 14 12 18 18 C 1.39688 * 120.52763 * 167.50761 * 17 15 14 19 19 C 1.37804 * 119.61342 * 179.35249 * 18 17 15 20 20 C 1.38628 * 120.22601 * 359.97438 * 19 18 17 21 21 C 1.38033 * 120.65995 * 0.24716 * 20 19 18 22 22 C 1.38823 * 120.09167 * 359.93027 * 21 20 19 23 23 O 1.35501 * 119.91436 * 179.58579 * 22 21 20 24 24 H 0.96999 * 120.00383 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.87598 * 300.16849 * 10 9 7 26 26 H 1.08996 * 109.87718 * 61.17108 * 10 9 7 27 27 H 1.09001 * 110.72861 * 139.81240 * 11 10 9 28 28 H 1.09002 * 110.72904 * 263.10434 * 11 10 9 29 29 H 1.08996 * 110.37028 * 275.78812 * 13 9 7 30 30 H 1.09006 * 110.37240 * 38.12658 * 13 9 7 31 31 H 1.09007 * 109.89336 * 299.34942 * 14 12 11 32 32 H 1.08995 * 109.89367 * 60.46265 * 14 12 11 33 33 H 1.08002 * 120.18845 * 359.37936 * 18 17 15 34 34 H 1.08004 * 119.88767 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.67036 * 180.21633 * 20 19 18 36 36 H 1.08002 * 119.95603 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1380 -2.5323 -0.0006 11 6 -0.4501 -4.0448 0.0186 12 6 0.8511 -4.6580 0.5788 13 6 1.9348 -3.7322 -0.0069 14 6 1.0299 -6.0819 0.0584 15 6 2.3248 -6.6179 0.6459 16 8 3.0815 -7.3091 -0.0028 17 6 2.6138 -6.2540 2.0443 18 6 3.6317 -6.9001 2.7498 19 6 3.8947 -6.5356 4.0525 20 6 3.1543 -5.5332 4.6598 21 6 2.1432 -4.8911 3.9738 22 6 1.8585 -5.2446 2.6619 23 8 0.8596 -4.6177 1.9946 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5574 -2.0559 0.8856 26 1 -0.5553 -2.0768 -0.8986 27 1 -1.2916 -4.2568 0.6781 28 1 -0.6466 -4.4110 -0.9891 29 1 2.1806 -4.0326 -1.0254 30 1 2.8265 -3.7478 0.6199 31 1 0.1926 -6.7018 0.3789 32 1 1.0916 -6.0740 -1.0298 33 1 4.2094 -7.6805 2.2769 34 1 4.6810 -7.0320 4.6019 35 1 3.3704 -5.2523 5.6800 36 1 1.5732 -4.1120 4.4581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578223234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -13.823172 kcal Electronic energy + Delta-G solvation = -21335.123604 eV Core-core repulsion = 18171.528801 eV Total energy + Delta-G solvation = -3163.594802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09591 -38.48196 -38.10294 -35.97970 -32.96391 -31.55295 -30.43009 -30.17006 -28.84812 -26.31296 -24.33872 -23.81434 -22.36499 -21.06096 -20.29741 -18.93042 -17.76354 -17.12110 -16.25852 -15.98954 -15.19377 -14.86826 -14.65463 -14.50146 -14.36438 -13.99685 -13.78494 -13.59867 -13.20121 -12.59820 -12.20305 -12.01814 -11.98084 -11.77774 -11.58047 -11.01405 -10.90980 -10.86034 -10.50941 -10.34615 -10.23044 -10.03879 -9.71008 -9.47743 -9.04501 -8.63199 -8.15832 -6.89012 -5.74787 -3.08677 0.69781 1.43139 2.39317 3.25527 3.39800 3.43796 3.44971 3.83356 3.98708 4.43225 4.64241 4.73464 4.80013 4.99050 5.07514 5.23267 5.32016 5.36757 5.43477 5.49010 5.55740 5.76621 5.82183 5.94850 6.03225 6.19914 6.24648 6.30529 6.31962 6.41476 6.44409 6.45418 6.76533 7.47816 7.48382 7.54847 7.67771 7.77928 8.20189 9.17379 9.76341 10.40614 11.37097 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.006101 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.687982 B = 4588.093322 C = 5133.988909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.178 3.822 11 C -0.130 4.130 12 C 0.107 3.893 13 C 0.117 3.883 14 C -0.185 4.185 15 C 0.407 3.593 16 O -0.455 6.455 17 C -0.257 4.257 18 C -0.028 4.028 19 C -0.177 4.177 20 C -0.052 4.052 21 C -0.163 4.163 22 C 0.198 3.802 23 O -0.280 6.280 24 H 0.254 0.746 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -13.023 6.332 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.054 3.946 11 C -0.168 4.168 12 C 0.068 3.932 13 C -0.010 4.010 14 C -0.223 4.223 15 C 0.286 3.714 16 O -0.330 6.330 17 C -0.259 4.259 18 C -0.047 4.047 19 C -0.196 4.196 20 C -0.070 4.070 21 C -0.182 4.182 22 C 0.150 3.850 23 O -0.192 6.192 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.788 -13.005 6.039 14.449 hybrid contribution 0.556 0.842 -0.059 1.011 sum 2.343 -12.162 5.980 13.754 Atomic orbital electron populations 1.69931 1.04862 1.25280 1.56811 1.24779 0.95739 0.97632 1.01975 0.86182 0.78477 0.83052 0.77955 1.21117 1.21487 1.21129 1.18990 0.90409 0.82208 1.44224 0.90532 1.44402 1.01506 0.99283 1.87198 1.21246 0.84254 0.87413 1.01716 1.22976 0.94064 0.99932 0.99817 1.22518 1.00682 0.92648 0.77343 1.22019 0.94047 0.87216 0.97698 1.22887 0.97826 0.97643 1.03950 1.22495 0.86270 0.76339 0.86316 1.90508 1.48682 1.31016 1.62840 1.20556 1.04011 1.03641 0.97719 1.21112 0.93128 0.96750 0.93664 1.20997 1.02462 1.00608 0.95488 1.21167 0.92930 0.93487 0.99425 1.20645 1.00955 1.03284 0.93283 1.19277 0.85681 0.88281 0.91750 1.85663 1.43201 1.69975 1.20353 0.93594 0.92918 0.93271 0.90370 0.89951 0.94760 0.93885 0.87182 0.86970 0.85067 0.85524 0.85108 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 2 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.28 3.40 -170.33 -0.58 -15.86 16 10 C 0.18 4.22 5.39 -2.96 -0.02 4.21 16 11 C -0.13 -2.29 6.12 -25.25 -0.15 -2.44 16 12 C 0.11 1.89 0.82 -89.51 -0.07 1.82 16 13 C 0.12 2.49 5.78 -2.88 -0.02 2.47 16 14 C -0.18 -2.68 5.16 -27.44 -0.14 -2.82 16 15 C 0.41 6.56 6.48 -29.98 -0.19 6.37 16 16 O -0.45 -8.09 17.41 5.54 0.10 -7.99 16 17 C -0.26 -4.04 5.76 -104.84 -0.60 -4.64 16 18 C -0.03 -0.38 9.64 -39.20 -0.38 -0.76 16 19 C -0.18 -2.04 10.03 -39.60 -0.40 -2.43 16 20 C -0.05 -0.60 10.02 -39.51 -0.40 -1.00 16 21 C -0.16 -2.34 9.97 -39.44 -0.39 -2.73 16 22 C 0.20 3.26 6.01 -38.56 -0.23 3.03 16 23 O -0.28 -5.13 9.69 -18.16 -0.18 -5.31 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.05 1.40 7.40 -51.93 -0.38 1.01 16 26 H 0.05 1.27 7.48 -51.93 -0.39 0.88 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 29 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 30 H 0.04 0.95 7.63 -51.93 -0.40 0.56 16 31 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.11 1.51 8.03 -51.93 -0.42 1.09 16 33 H 0.13 1.62 7.81 -52.49 -0.41 1.21 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -31.71 299.48 -8.33 -40.03 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.48 Total: -0.49 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -3.25 Total: -5.80 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.01 Total: -42.07 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.08 Total: -13.30 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.71 -8.33 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578223234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.211 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds