Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99650 * 2 1 4 4 H 1.48494 * 109.47653 * 240.00119 * 3 2 1 5 5 H 1.48508 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46923 * 119.99764 * 3 2 1 7 7 C 1.38804 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00284 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47086 * 125.62621 * 0.02919 * 9 7 2 11 11 C 1.54450 * 107.28597 * 180.74564 * 10 9 7 12 12 C 1.54370 * 102.89723 * 21.45722 * 11 10 9 13 13 C 1.47582 * 125.62783 * 179.72242 * 9 7 2 14 14 C 1.52651 * 110.21461 * 207.89757 * 12 11 10 15 15 C 1.51956 * 107.27956 * 179.90667 * 14 12 11 16 16 O 1.21297 * 121.72562 * 219.04912 * 15 14 12 17 17 C 1.47363 * 116.54586 * 39.02257 * 15 14 12 18 18 C 1.39688 * 120.52763 * 167.50761 * 17 15 14 19 19 C 1.37804 * 119.61342 * 179.35249 * 18 17 15 20 20 C 1.38628 * 120.22601 * 359.97438 * 19 18 17 21 21 C 1.38033 * 120.65995 * 0.24716 * 20 19 18 22 22 C 1.38823 * 120.09167 * 359.93027 * 21 20 19 23 23 O 1.35501 * 119.91436 * 179.58579 * 22 21 20 24 24 H 0.96999 * 120.00383 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.87598 * 300.16849 * 10 9 7 26 26 H 1.08996 * 109.87718 * 61.17108 * 10 9 7 27 27 H 1.09001 * 110.72861 * 139.81240 * 11 10 9 28 28 H 1.09002 * 110.72904 * 263.10434 * 11 10 9 29 29 H 1.08996 * 110.37028 * 275.78812 * 13 9 7 30 30 H 1.09006 * 110.37240 * 38.12658 * 13 9 7 31 31 H 1.09007 * 109.89336 * 299.34942 * 14 12 11 32 32 H 1.08995 * 109.89367 * 60.46265 * 14 12 11 33 33 H 1.08002 * 120.18845 * 359.37936 * 18 17 15 34 34 H 1.08004 * 119.88767 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.67036 * 180.21633 * 20 19 18 36 36 H 1.08002 * 119.95603 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1380 -2.5323 -0.0006 11 6 -0.4501 -4.0448 0.0186 12 6 0.8511 -4.6580 0.5788 13 6 1.9348 -3.7322 -0.0069 14 6 1.0299 -6.0819 0.0584 15 6 2.3248 -6.6179 0.6459 16 8 3.0815 -7.3091 -0.0028 17 6 2.6138 -6.2540 2.0443 18 6 3.6317 -6.9001 2.7498 19 6 3.8947 -6.5356 4.0525 20 6 3.1543 -5.5332 4.6598 21 6 2.1432 -4.8911 3.9738 22 6 1.8585 -5.2446 2.6619 23 8 0.8596 -4.6177 1.9946 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5574 -2.0559 0.8856 26 1 -0.5553 -2.0768 -0.8986 27 1 -1.2916 -4.2568 0.6781 28 1 -0.6466 -4.4110 -0.9891 29 1 2.1806 -4.0326 -1.0254 30 1 2.8265 -3.7478 0.6199 31 1 0.1926 -6.7018 0.3789 32 1 1.0916 -6.0740 -1.0298 33 1 4.2094 -7.6805 2.2769 34 1 4.6810 -7.0320 4.6019 35 1 3.3704 -5.2523 5.6800 36 1 1.5732 -4.1120 4.4581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578223234.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -33.126911 kcal Electronic energy + Delta-G solvation = -21335.960677 eV Core-core repulsion = 18171.528801 eV Total energy + Delta-G solvation = -3164.431875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.35879 -39.82060 -39.29985 -37.52367 -34.71641 -32.95702 -31.88675 -31.36994 -30.40617 -28.03753 -26.11881 -24.93280 -23.56781 -22.51565 -22.02422 -20.08817 -19.12113 -18.93803 -17.59810 -17.19350 -16.82864 -16.39955 -16.05275 -15.91787 -15.59599 -15.35169 -15.20469 -14.94332 -14.70078 -13.99155 -13.85047 -13.50970 -13.25581 -13.07358 -12.82939 -12.79207 -12.70028 -12.30302 -12.14648 -12.07550 -11.93582 -11.71747 -11.49114 -10.76255 -10.71833 -10.10265 -9.31207 -8.94401 -7.88670 -5.24873 -0.41526 0.36227 1.25016 1.43605 1.46748 1.53268 2.03160 2.45555 2.75736 2.82071 3.27175 3.32827 3.44935 3.63081 3.68641 3.83189 3.96321 4.16068 4.22062 4.34826 4.39198 4.48985 4.51288 4.61621 4.68488 4.79685 4.85986 4.93615 4.96196 5.16691 5.33094 5.38013 5.43793 5.60828 5.72596 5.76397 6.15115 6.27068 6.42799 7.06156 7.70203 8.33825 9.21302 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.006101 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.687982 B = 4588.093322 C = 5133.988909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.619 5.619 10 C 0.185 3.815 11 C -0.115 4.115 12 C 0.118 3.882 13 C 0.114 3.886 14 C -0.175 4.175 15 C 0.405 3.595 16 O -0.478 6.478 17 C -0.275 4.275 18 C -0.037 4.037 19 C -0.164 4.164 20 C -0.041 4.041 21 C -0.180 4.180 22 C 0.168 3.832 23 O -0.301 6.301 24 H 0.250 0.750 25 H 0.013 0.987 26 H 0.019 0.981 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -14.537 7.402 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.345 5.345 10 C 0.060 3.940 11 C -0.152 4.152 12 C 0.079 3.921 13 C -0.012 4.012 14 C -0.213 4.213 15 C 0.286 3.714 16 O -0.356 6.356 17 C -0.277 4.277 18 C -0.056 4.056 19 C -0.182 4.182 20 C -0.058 4.058 21 C -0.198 4.198 22 C 0.122 3.878 23 O -0.215 6.215 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.748 -14.549 7.118 16.428 hybrid contribution 0.357 1.285 -0.284 1.364 sum 3.105 -13.264 6.834 15.241 Atomic orbital electron populations 1.70149 1.06122 1.25575 1.57609 1.25604 0.96665 1.00806 1.02083 0.85176 0.77270 0.78838 0.78183 1.20286 1.21484 1.20487 1.19326 0.90743 0.83777 1.44038 0.90757 1.44668 1.02517 1.00259 1.87100 1.21001 0.83223 0.91416 0.98371 1.22882 0.94874 0.95205 1.02265 1.22312 0.98584 0.93668 0.77542 1.22156 0.94752 0.86345 0.97929 1.22880 0.98265 0.95547 1.04595 1.22741 0.86409 0.75728 0.86563 1.90496 1.49355 1.32373 1.63361 1.20667 1.04994 1.04178 0.97827 1.21403 0.92639 0.96874 0.94644 1.21457 1.02382 0.99674 0.94663 1.21617 0.91129 0.92313 1.00767 1.20916 1.02059 1.03923 0.92943 1.19564 0.86356 0.89288 0.92593 1.85629 1.44370 1.71058 1.20393 0.94116 0.96834 0.96260 0.88277 0.86864 0.94105 0.95477 0.83998 0.85571 0.84107 0.81777 0.81391 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.90 10.31 21.65 0.22 -56.67 16 2 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.25 -14.45 10.28 84.03 0.86 -13.59 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -32.61 3.40 -692.80 -2.36 -34.97 16 10 C 0.18 9.04 5.39 86.76 0.47 9.50 16 11 C -0.11 -3.94 6.12 31.55 0.19 -3.74 16 12 C 0.12 4.08 0.82 -10.08 -0.01 4.07 16 13 C 0.11 4.91 5.78 86.54 0.50 5.41 16 14 C -0.18 -4.72 5.16 30.13 0.16 -4.56 16 15 C 0.41 12.57 6.48 28.49 0.18 12.75 16 16 O -0.48 -16.50 17.41 -3.08 -0.05 -16.56 16 17 C -0.27 -8.33 5.76 -20.00 -0.12 -8.44 16 18 C -0.04 -0.93 9.64 22.52 0.22 -0.71 16 19 C -0.16 -3.18 10.03 22.26 0.22 -2.95 16 20 C -0.04 -0.82 10.02 22.31 0.22 -0.59 16 21 C -0.18 -4.97 9.97 22.36 0.22 -4.75 16 22 C 0.17 5.47 6.01 22.93 0.14 5.61 16 23 O -0.30 -11.04 9.69 -87.88 -0.85 -11.89 16 24 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.01 0.75 7.40 -2.38 -0.02 0.73 16 26 H 0.02 1.04 7.48 -2.39 -0.02 1.02 16 27 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.11 3.20 7.99 -2.39 -0.02 3.18 16 29 H 0.04 1.70 7.91 -2.39 -0.02 1.69 16 30 H 0.03 1.23 7.63 -2.38 -0.02 1.21 16 31 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 32 H 0.13 3.06 8.03 -2.39 -0.02 3.04 16 33 H 0.14 3.17 7.81 -2.91 -0.02 3.15 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -71.82 299.48 3.80 -68.02 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.08 Total: 8.67 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 3.73 Total: -4.88 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -2.13 Total: -91.64 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.91 Total: -28.45 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.82 3.80 -68.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578223234.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.890 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds