Wall clock time and date at job start Mon Mar 30 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47029 * 299.99817 * 3 2 1 6 6 H 1.48495 * 109.47171 * 60.00082 * 3 2 1 7 7 C 1.40234 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 196.77513 * 7 2 1 9 9 C 1.41106 * 120.00010 * 16.78532 * 7 2 1 10 10 C 1.40891 * 120.10366 * 205.50601 * 9 7 2 11 11 C 1.36318 * 119.89182 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10637 * 0.02562 * 11 10 9 13 13 C 1.47646 * 119.89175 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00136 * 24.85597 * 13 12 11 15 15 N 1.34773 * 119.99621 * 204.85773 * 13 12 11 16 16 C 1.46057 * 120.06749 * 184.99757 * 15 13 12 17 17 C 1.51532 * 111.30842 * 216.71573 * 16 15 13 18 18 O 1.41191 * 113.35464 * 306.40569 * 17 16 15 19 19 C 1.42225 * 117.92350 * 47.83179 * 18 17 16 20 20 H 1.08995 * 115.52385 * 124.90985 * 19 18 17 21 21 C 1.53517 * 116.42785 * 268.85779 * 19 18 17 22 22 C 1.46376 * 120.07242 * 5.27508 * 15 13 12 23 23 H 1.08996 * 115.48130 * 23.79853 * 22 15 13 24 24 C 1.40009 * 120.20813 * 0.25700 * 12 11 10 25 25 C 1.36313 * 120.10812 * 359.43535 * 24 12 11 26 26 H 0.97005 * 120.00404 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.04841 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.94148 * 179.97438 * 11 10 9 29 29 H 1.09007 * 109.14714 * 337.27205 * 16 15 13 30 30 H 1.09000 * 109.14810 * 96.42841 * 16 15 13 31 31 H 1.08997 * 108.79754 * 185.30776 * 17 16 15 32 32 H 1.09002 * 108.44058 * 67.25087 * 17 16 15 33 33 H 1.08997 * 117.50145 * 1.92193 * 21 19 18 34 34 H 1.09003 * 117.49516 * 216.91199 * 21 19 18 35 35 H 1.08005 * 119.93968 * 179.70008 * 24 12 11 36 36 H 1.08005 * 120.05184 * 180.28326 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0530 -1.2343 0.2705 9 6 1.3470 -2.4106 -0.3518 10 6 1.8174 -3.6469 0.1333 11 6 1.1763 -4.7998 -0.2102 12 6 0.0525 -4.7568 -1.0442 13 6 -0.6379 -6.0085 -1.4138 14 8 -0.5562 -6.9837 -0.6923 15 7 -1.3586 -6.0700 -2.5510 16 6 -2.1306 -7.2697 -2.8641 17 6 -2.1083 -7.5667 -4.3499 18 8 -2.5140 -6.4730 -5.1454 19 6 -1.9411 -5.2006 -4.8705 20 1 -1.4583 -4.7104 -5.7158 21 6 -2.6976 -4.3117 -3.8734 22 6 -1.3646 -4.9370 -3.4778 23 1 -0.4994 -4.2769 -3.4169 24 6 -0.4151 -3.5312 -1.5336 25 6 0.2156 -2.3725 -1.1905 26 1 -0.4851 0.8401 -0.0004 27 1 2.6849 -3.6811 0.7757 28 1 1.5364 -5.7480 0.1609 29 1 -1.7091 -8.1173 -2.3235 30 1 -3.1634 -7.1229 -2.5480 31 1 -2.7701 -8.4094 -4.5496 32 1 -1.0927 -7.8459 -4.6305 33 1 -3.6000 -4.7204 -3.4187 34 1 -2.7127 -3.2390 -4.0663 35 1 -1.2795 -3.5035 -2.1806 36 1 -0.1486 -1.4271 -1.5648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590428928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:37 Heat of formation + Delta-G solvation = -11.902037 kcal Electronic energy + Delta-G solvation = -20763.371903 eV Core-core repulsion = 17599.860407 eV Total energy + Delta-G solvation = -3163.511496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54371 -38.42733 -37.14285 -35.26447 -33.92981 -33.56088 -30.59448 -29.53567 -28.92611 -25.96047 -24.16670 -22.69093 -22.01928 -21.09800 -20.46322 -18.58105 -17.57197 -17.30551 -16.81164 -15.77984 -15.53973 -15.33490 -14.63079 -14.52903 -14.07459 -14.04027 -13.42984 -13.02749 -12.79730 -12.44933 -12.09827 -12.03694 -11.78896 -11.54674 -11.40644 -11.27824 -11.02500 -10.98081 -10.68621 -10.45521 -10.06391 -9.54466 -9.48379 -9.37846 -9.00730 -8.19996 -7.72126 -7.57406 -7.05741 -4.64128 2.17419 2.87300 2.93046 2.96227 2.98690 3.03290 3.48606 3.66725 3.72510 4.00304 4.45598 4.50862 4.81137 4.88596 5.01382 5.15565 5.35323 5.50159 5.54826 5.67820 5.80764 5.89003 5.96625 6.07618 6.17909 6.25834 6.70701 6.77087 6.79853 6.99994 7.08168 7.27200 7.40309 7.52802 7.73149 7.82332 7.94518 8.03828 8.36683 8.59825 8.71156 8.85092 9.86419 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.004881 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.399278 B = 5735.628961 C = 6481.162473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.237 4.237 11 C -0.024 4.024 12 C -0.284 4.284 13 C 0.580 3.420 14 O -0.565 6.565 15 N -0.592 5.592 16 C 0.076 3.924 17 C 0.058 3.942 18 O -0.355 6.355 19 C 0.009 3.991 20 H 0.137 0.863 21 C -0.205 4.205 22 C 0.067 3.933 23 H 0.158 0.842 24 C -0.080 4.080 25 C -0.178 4.178 26 H 0.286 0.714 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -3.690 -8.320 9.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.256 4.256 11 C -0.043 4.043 12 C -0.288 4.288 13 C 0.377 3.623 14 O -0.446 6.446 15 N -0.325 5.325 16 C -0.047 4.047 17 C -0.019 4.019 18 O -0.273 6.273 19 C -0.050 4.050 20 H 0.154 0.846 21 C -0.244 4.244 22 C -0.039 4.039 23 H 0.175 0.825 24 C -0.098 4.098 25 C -0.197 4.197 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.592 -4.117 -8.034 9.716 hybrid contribution 0.255 0.835 0.335 0.935 sum -3.337 -3.282 -7.699 9.010 Atomic orbital electron populations 1.69744 1.07898 1.29972 1.31932 1.26094 0.94810 1.01868 0.91902 0.86172 0.81082 0.80219 0.78890 1.18072 1.19362 1.19665 1.19881 0.98073 0.91053 1.38050 0.89700 1.17813 0.90430 0.92140 0.87117 1.20712 1.04536 0.92695 1.07662 1.20320 0.93232 0.97121 0.93606 1.18802 1.04724 0.91009 1.14276 1.18719 0.76452 0.88602 0.78551 1.90641 1.63643 1.38823 1.51499 1.46928 1.49626 1.14398 1.21556 1.21562 0.96495 0.90131 0.96521 1.22183 1.00914 0.88914 0.89920 1.87102 1.67393 1.15511 1.57260 1.23590 1.01742 0.85711 0.93962 0.84552 1.24026 0.97004 1.00157 1.03192 1.22624 0.99397 0.92347 0.89483 0.82496 1.21123 0.98479 0.92336 0.97901 1.21011 0.99889 0.96805 1.01970 0.90256 0.88348 0.88415 0.88084 0.92089 0.87830 0.93133 0.88175 0.86674 0.87088 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.27 10.95 55.56 0.61 -17.66 16 2 C 0.07 1.71 5.15 -17.31 -0.09 1.62 16 3 Si 0.91 16.96 29.59 -169.99 -5.03 11.93 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.44 -10.82 9.05 -37.75 -0.34 -11.16 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.20 5.57 -106.80 -0.59 2.60 16 10 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 11 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 12 C -0.28 -6.44 5.60 -104.73 -0.59 -7.02 16 13 C 0.58 12.52 7.48 -12.42 -0.09 12.42 16 14 O -0.57 -13.49 16.03 5.29 0.08 -13.41 16 15 N -0.59 -10.48 3.16 -168.91 -0.53 -11.01 16 16 C 0.08 1.12 6.28 -5.02 -0.03 1.09 16 17 C 0.06 0.71 6.90 36.41 0.25 0.96 16 18 O -0.35 -4.87 10.57 -34.97 -0.37 -5.24 16 19 C 0.01 0.12 7.15 -26.45 -0.19 -0.07 16 20 H 0.14 1.46 8.14 -51.93 -0.42 1.03 16 21 C -0.20 -2.71 9.44 -26.74 -0.25 -2.96 16 22 C 0.07 1.03 4.09 -68.26 -0.28 0.75 16 23 H 0.16 2.54 5.46 -51.93 -0.28 2.26 16 24 C -0.08 -1.73 7.46 -39.61 -0.30 -2.03 16 25 C -0.18 -4.23 8.63 -39.27 -0.34 -4.57 16 26 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 27 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.10 2.18 7.83 -52.49 -0.41 1.77 16 29 H 0.10 1.54 7.14 -51.93 -0.37 1.17 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.11 2.12 4.27 -52.48 -0.22 1.89 16 36 H 0.12 2.90 6.18 -52.48 -0.32 2.58 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -28.33 297.65 -8.48 -36.80 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.12 Total: 9.40 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -3.60 Total: -15.30 kcal Atomic # 7 Polarization: -28.75 SS G_CDS: 0.07 Total: -28.67 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.33 -8.48 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590428928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.903 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds