Wall clock time and date at job start Mon Mar 30 2020 01:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47029 * 299.99817 * 3 2 1 6 6 H 1.48495 * 109.47171 * 60.00082 * 3 2 1 7 7 C 1.40234 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 196.77513 * 7 2 1 9 9 C 1.41106 * 120.00010 * 16.78532 * 7 2 1 10 10 C 1.40891 * 120.10366 * 205.50601 * 9 7 2 11 11 C 1.36318 * 119.89182 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10637 * 0.02562 * 11 10 9 13 13 C 1.47646 * 119.89175 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00136 * 24.85597 * 13 12 11 15 15 N 1.34773 * 119.99621 * 204.85773 * 13 12 11 16 16 C 1.46057 * 120.06749 * 184.99757 * 15 13 12 17 17 C 1.51532 * 111.30842 * 216.71573 * 16 15 13 18 18 O 1.41191 * 113.35464 * 306.40569 * 17 16 15 19 19 C 1.42225 * 117.92350 * 47.83179 * 18 17 16 20 20 H 1.08995 * 115.52385 * 124.90985 * 19 18 17 21 21 C 1.53517 * 116.42785 * 268.85779 * 19 18 17 22 22 C 1.46376 * 120.07242 * 5.27508 * 15 13 12 23 23 H 1.08996 * 115.48130 * 23.79853 * 22 15 13 24 24 C 1.40009 * 120.20813 * 0.25700 * 12 11 10 25 25 C 1.36313 * 120.10812 * 359.43535 * 24 12 11 26 26 H 0.97005 * 120.00404 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.04841 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.94148 * 179.97438 * 11 10 9 29 29 H 1.09007 * 109.14714 * 337.27205 * 16 15 13 30 30 H 1.09000 * 109.14810 * 96.42841 * 16 15 13 31 31 H 1.08997 * 108.79754 * 185.30776 * 17 16 15 32 32 H 1.09002 * 108.44058 * 67.25087 * 17 16 15 33 33 H 1.08997 * 117.50145 * 1.92193 * 21 19 18 34 34 H 1.09003 * 117.49516 * 216.91199 * 21 19 18 35 35 H 1.08005 * 119.93968 * 179.70008 * 24 12 11 36 36 H 1.08005 * 120.05184 * 180.28326 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0530 -1.2343 0.2705 9 6 1.3470 -2.4106 -0.3518 10 6 1.8174 -3.6469 0.1333 11 6 1.1763 -4.7998 -0.2102 12 6 0.0525 -4.7568 -1.0442 13 6 -0.6379 -6.0085 -1.4138 14 8 -0.5562 -6.9837 -0.6923 15 7 -1.3586 -6.0700 -2.5510 16 6 -2.1306 -7.2697 -2.8641 17 6 -2.1083 -7.5667 -4.3499 18 8 -2.5140 -6.4730 -5.1454 19 6 -1.9411 -5.2006 -4.8705 20 1 -1.4583 -4.7104 -5.7158 21 6 -2.6976 -4.3117 -3.8734 22 6 -1.3646 -4.9370 -3.4778 23 1 -0.4994 -4.2769 -3.4169 24 6 -0.4151 -3.5312 -1.5336 25 6 0.2156 -2.3725 -1.1905 26 1 -0.4851 0.8401 -0.0004 27 1 2.6849 -3.6811 0.7757 28 1 1.5364 -5.7480 0.1609 29 1 -1.7091 -8.1173 -2.3235 30 1 -3.1634 -7.1229 -2.5480 31 1 -2.7701 -8.4094 -4.5496 32 1 -1.0927 -7.8459 -4.6305 33 1 -3.6000 -4.7204 -3.4187 34 1 -2.7127 -3.2390 -4.0663 35 1 -1.2795 -3.5035 -2.1806 36 1 -0.1486 -1.4271 -1.5648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590428928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:36 Heat of formation + Delta-G solvation = -28.215715 kcal Electronic energy + Delta-G solvation = -20764.079317 eV Core-core repulsion = 17599.860407 eV Total energy + Delta-G solvation = -3164.218910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87486 -39.91976 -38.88411 -36.50474 -35.64883 -34.86614 -32.28938 -31.35482 -30.27522 -27.65479 -25.39144 -24.18840 -23.27443 -22.84566 -21.94764 -19.98299 -19.32557 -18.67895 -18.16501 -17.20651 -16.98841 -16.68595 -16.08298 -15.88337 -15.66640 -15.30704 -15.00756 -14.52998 -14.44579 -13.98368 -13.79168 -13.44464 -13.27480 -13.09071 -12.84066 -12.59661 -12.48645 -12.39262 -12.07100 -11.81638 -11.73924 -11.25177 -11.11869 -10.85703 -10.40762 -9.61756 -9.52708 -9.33555 -8.78574 -6.49006 0.41715 1.12278 1.38981 1.42322 1.56328 1.71912 1.96091 2.17675 2.45689 2.68330 2.91938 3.36618 3.64132 3.68525 3.70797 3.87839 4.09267 4.17750 4.35450 4.39458 4.44228 4.59948 4.72550 4.79837 4.83492 4.94574 5.02861 5.06083 5.14376 5.28128 5.43915 5.59705 5.77111 5.93425 5.99405 6.20650 6.22504 6.35022 6.54267 6.77234 6.88009 7.20456 8.16968 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.004881 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.399278 B = 5735.628961 C = 6481.162473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.266 1.266 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.251 4.251 11 C -0.034 4.034 12 C -0.295 4.295 13 C 0.575 3.425 14 O -0.598 6.598 15 N -0.587 5.587 16 C 0.071 3.929 17 C 0.064 3.936 18 O -0.362 6.362 19 C 0.028 3.972 20 H 0.166 0.834 21 C -0.194 4.194 22 C 0.032 3.968 23 H 0.146 0.854 24 C -0.066 4.066 25 C -0.194 4.194 26 H 0.297 0.703 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -2.935 -10.062 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.271 4.271 11 C -0.053 4.053 12 C -0.299 4.299 13 C 0.371 3.629 14 O -0.481 6.481 15 N -0.318 5.318 16 C -0.051 4.051 17 C -0.013 4.013 18 O -0.280 6.280 19 C -0.030 4.030 20 H 0.183 0.817 21 C -0.232 4.232 22 C -0.073 4.073 23 H 0.164 0.836 24 C -0.084 4.084 25 C -0.214 4.214 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.519 -3.372 -9.817 11.321 hybrid contribution 0.461 0.510 0.845 1.089 sum -4.058 -2.862 -8.973 10.255 Atomic orbital electron populations 1.69763 1.09244 1.31574 1.31788 1.26907 0.95514 1.04767 0.90777 0.85069 0.79430 0.75529 0.79255 1.18060 1.18254 1.19065 1.20137 0.98374 0.92059 1.39452 0.89706 1.18158 0.91314 0.92792 0.87843 1.20848 1.05125 0.92809 1.08269 1.20467 0.93767 0.97083 0.94020 1.19082 1.04605 0.92175 1.14023 1.18562 0.77014 0.87725 0.79565 1.90612 1.65111 1.39458 1.52952 1.46877 1.48456 1.15976 1.20492 1.21792 0.96180 0.88657 0.98501 1.22289 1.02024 0.89355 0.87650 1.87098 1.67644 1.15848 1.57380 1.23842 1.00186 0.85696 0.93312 0.81710 1.24111 0.95213 1.01467 1.02455 1.22712 1.00561 0.92693 0.91312 0.83639 1.21337 0.98668 0.91250 0.97179 1.21035 1.00387 0.97255 1.02691 0.89178 0.87766 0.88175 0.88874 0.91330 0.84461 0.93055 0.88554 0.84616 0.84356 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.80 10.95 21.87 0.24 -37.56 16 2 C 0.04 1.79 5.15 85.36 0.44 2.23 16 3 Si 0.99 34.14 29.59 68.60 2.03 36.17 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 6 H -0.27 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.47 -23.54 9.05 23.46 0.21 -23.33 16 8 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 9 C 0.10 5.23 5.57 -21.28 -0.12 5.12 16 10 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 11 C -0.03 -1.64 9.52 22.25 0.21 -1.43 16 12 C -0.29 -13.58 5.60 -19.93 -0.11 -13.69 16 13 C 0.58 25.02 7.48 86.73 0.65 25.67 16 14 O -0.60 -29.01 16.03 -3.97 -0.06 -29.07 16 15 N -0.59 -20.25 3.16 -806.59 -2.55 -22.80 16 16 C 0.07 1.99 6.28 85.98 0.54 2.53 16 17 C 0.06 1.39 6.90 71.50 0.49 1.88 16 18 O -0.36 -8.69 10.57 -148.06 -1.57 -10.25 16 19 C 0.03 0.64 7.15 30.77 0.22 0.86 16 20 H 0.17 2.85 8.14 -2.39 -0.02 2.83 16 21 C -0.19 -4.58 9.44 30.59 0.29 -4.29 16 22 C 0.03 0.93 4.09 44.84 0.18 1.12 16 23 H 0.15 4.58 5.46 -2.39 -0.01 4.56 16 24 C -0.07 -2.88 7.46 22.25 0.17 -2.72 16 25 C -0.19 -9.41 8.63 22.47 0.19 -9.22 16 26 H 0.30 12.41 8.29 -92.70 -0.77 11.64 16 27 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 28 H 0.10 4.65 7.83 -2.91 -0.02 4.62 16 29 H 0.09 2.78 7.14 -2.38 -0.02 2.76 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.14 5.16 4.27 -2.91 -0.01 5.14 16 36 H 0.12 5.65 6.18 -2.91 -0.02 5.63 16 Total: -1.00 -61.69 297.65 2.78 -58.91 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 1.11 Total: 32.03 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.59 Total: -27.43 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -2.31 Total: -60.36 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.63 Total: -39.32 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Total: -61.69 2.78 -58.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590428928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.693 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds