Wall clock time and date at job start Mon Mar 30 2020 01:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46943 * 240.00183 * 3 2 1 5 5 H 1.48501 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46757 * 120.00287 * 3 2 1 7 7 C 1.39938 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99782 * 196.65122 * 7 2 1 9 9 C 1.41435 * 119.99897 * 16.65514 * 7 2 1 10 10 C 1.40785 * 120.17192 * 205.10212 * 9 7 2 11 11 C 1.37715 * 120.03962 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.40835 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35936 * 359.97438 * 12 11 10 14 14 C 1.47885 * 120.02389 * 180.02562 * 13 12 11 15 15 O 1.21555 * 120.00020 * 222.50849 * 14 13 12 16 16 N 1.34779 * 120.00255 * 42.50273 * 14 13 12 17 17 C 1.45343 * 119.59207 * 175.37236 * 16 14 13 18 18 C 1.51865 * 110.85566 * 217.34883 * 17 16 14 19 19 O 1.41197 * 113.23399 * 305.97423 * 18 17 16 20 20 C 1.42220 * 117.91851 * 47.99370 * 19 18 17 21 21 H 1.09007 * 115.52119 * 124.90807 * 20 19 18 22 22 C 1.53513 * 116.43388 * 268.85677 * 20 19 18 23 23 C 1.46376 * 120.06512 * 355.45307 * 16 14 13 24 24 H 1.08995 * 115.48253 * 23.12714 * 23 16 14 25 25 C 1.39030 * 119.95024 * 0.27577 * 13 12 11 26 26 H 0.96994 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.98660 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.80064 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.81833 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.34802 * 96.95198 * 17 16 14 31 31 H 1.09003 * 109.21007 * 337.64480 * 17 16 14 32 32 H 1.09001 * 108.73224 * 185.01347 * 18 17 16 33 33 H 1.08998 * 108.73735 * 66.94990 * 18 17 16 34 34 H 1.09004 * 117.49890 * 1.92728 * 22 20 19 35 35 H 1.09003 * 117.51944 * 216.90531 * 22 20 19 36 36 H 1.07996 * 120.20303 * 179.70360 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0540 -1.2316 0.2675 9 6 1.3452 -2.4109 -0.3521 10 6 1.8200 -3.6477 0.1243 11 6 1.1723 -4.8134 -0.2193 12 6 0.0537 -4.7794 -1.0333 13 6 -0.4325 -3.5600 -1.5161 14 6 -1.6288 -3.5322 -2.3850 15 8 -1.6538 -2.8095 -3.3621 16 7 -2.6915 -4.3083 -2.0937 17 6 -3.9001 -4.2003 -2.8939 18 6 -5.1378 -4.3471 -2.0263 19 8 -5.1382 -5.5275 -1.2515 20 6 -3.9611 -5.8433 -0.5185 21 1 -4.1016 -5.9992 0.5512 22 6 -2.9268 -6.7243 -1.2330 23 6 -2.6262 -5.2519 -0.9765 24 1 -1.8916 -5.0167 -0.2064 25 6 0.2129 -2.3745 -1.1828 26 1 -0.4850 0.8400 0.0004 27 1 2.6926 -3.6824 0.7596 28 1 1.5400 -5.7601 0.1480 29 1 -0.4471 -5.6994 -1.2964 30 1 -3.9011 -4.9818 -3.6537 31 1 -3.9201 -3.2267 -3.3836 32 1 -6.0178 -4.3505 -2.6695 33 1 -5.2000 -3.4891 -1.3570 34 1 -3.1427 -7.0227 -2.2590 35 1 -2.3906 -7.4594 -0.6327 36 1 -0.1561 -1.4311 -1.5573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590431640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:43 Heat of formation + Delta-G solvation = -18.289522 kcal Electronic energy + Delta-G solvation = -20912.571059 eV Core-core repulsion = 17748.782581 eV Total energy + Delta-G solvation = -3163.788478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55615 -38.50814 -37.08208 -35.21645 -33.76196 -33.66702 -30.62304 -29.57375 -28.70607 -25.52680 -24.26595 -22.99953 -22.14084 -21.07793 -20.41620 -18.55680 -17.85516 -17.00836 -16.56109 -15.77348 -15.48927 -15.08707 -14.73687 -14.64213 -14.47721 -13.93163 -13.53214 -12.99595 -12.86426 -12.53384 -12.35533 -11.89578 -11.70442 -11.47274 -11.23540 -11.16106 -11.01401 -10.84639 -10.58076 -10.45957 -10.19828 -9.74776 -9.47192 -9.26438 -9.08763 -8.25335 -7.66566 -7.55737 -6.86438 -4.47850 2.22675 2.75743 2.97385 3.03878 3.05403 3.12185 3.43161 3.55663 3.87208 3.99728 4.46653 4.52565 4.80088 4.85536 4.98091 5.16974 5.33862 5.44650 5.52804 5.65683 5.73884 5.87236 5.91141 6.05847 6.11061 6.29295 6.62428 6.72411 6.91941 6.98112 7.14386 7.26146 7.31537 7.55437 7.69470 7.78154 7.90219 8.09760 8.43450 8.66137 8.75127 8.77602 10.08677 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.005404 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.093885 B = 5180.413828 C = 5771.626793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.223 4.223 13 C -0.122 4.122 14 C 0.577 3.423 15 O -0.542 6.542 16 N -0.586 5.586 17 C 0.076 3.924 18 C 0.056 3.944 19 O -0.354 6.354 20 C 0.012 3.988 21 H 0.137 0.863 22 C -0.203 4.203 23 C 0.067 3.933 24 H 0.159 0.841 25 C -0.100 4.100 26 H 0.284 0.716 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -7.504 -0.012 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.100 3.900 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.242 4.242 13 C -0.125 4.125 14 C 0.369 3.631 15 O -0.419 6.419 16 N -0.319 5.319 17 C -0.047 4.047 18 C -0.021 4.021 19 O -0.272 6.272 20 C -0.047 4.047 21 H 0.155 0.845 22 C -0.242 4.242 23 C -0.038 4.038 24 H 0.177 0.823 25 C -0.120 4.120 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.273 -7.013 -0.554 10.119 hybrid contribution 0.480 0.812 -0.045 0.944 sum -6.793 -6.202 -0.599 9.218 Atomic orbital electron populations 1.69767 1.07653 1.29770 1.34401 1.25950 0.94790 1.01572 0.92108 0.86301 0.80108 0.79944 0.80046 1.18672 1.20239 1.18911 1.19570 0.97808 0.90903 1.40514 0.90054 1.17556 0.91036 0.92486 0.88902 1.21123 1.03265 0.92830 1.05840 1.20457 0.95760 0.96746 0.98519 1.20543 1.01481 0.95089 1.07135 1.19363 0.95968 0.95716 1.01422 1.18984 0.82641 0.77207 0.84261 1.90696 1.81771 1.40896 1.28505 1.46806 1.13817 1.39406 1.31866 1.21546 0.84733 1.04267 0.94160 1.22273 0.97749 0.87845 0.94237 1.87103 1.34955 1.42833 1.62303 1.23496 0.81911 1.03834 0.95504 0.84536 1.23969 1.02873 0.94438 1.02917 1.22563 0.99367 0.89184 0.92727 0.82347 1.21470 0.96953 0.95796 0.97757 0.90505 0.88552 0.88750 0.88174 0.91891 0.88058 0.87770 0.92835 0.88330 0.86822 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 10.94 55.55 0.61 -19.69 16 2 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.10 2.65 5.57 -106.87 -0.59 2.06 16 10 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 11 C -0.10 -1.99 10.01 -39.72 -0.40 -2.38 16 12 C -0.22 -4.59 7.41 -38.92 -0.29 -4.87 16 13 C -0.12 -2.83 5.24 -105.04 -0.55 -3.38 16 14 C 0.58 12.79 7.29 -12.31 -0.09 12.70 16 15 O -0.54 -13.44 16.39 5.32 0.09 -13.35 16 16 N -0.59 -10.50 3.13 -169.19 -0.53 -11.03 16 17 C 0.08 1.15 6.21 -5.24 -0.03 1.11 16 18 C 0.06 0.72 6.91 36.58 0.25 0.97 16 19 O -0.35 -4.91 10.57 -34.98 -0.37 -5.28 16 20 C 0.01 0.15 7.15 -26.45 -0.19 -0.04 16 21 H 0.14 1.48 8.14 -51.93 -0.42 1.05 16 22 C -0.20 -2.52 9.97 -26.74 -0.27 -2.78 16 23 C 0.07 1.03 4.34 -68.26 -0.30 0.73 16 24 H 0.16 2.60 5.53 -51.93 -0.29 2.31 16 25 C -0.10 -2.60 8.29 -38.44 -0.32 -2.92 16 26 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.10 1.80 6.04 -52.49 -0.32 1.48 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.60 7.19 -51.93 -0.37 1.23 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.13 3.58 6.18 -52.49 -0.32 3.25 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -29.10 300.45 -8.52 -37.62 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.23 Total: 8.22 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.58 Total: -14.46 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.08 Total: -30.72 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.28 Total: -18.63 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.10 -8.52 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590431640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.333 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds