Wall clock time and date at job start Mon Mar 30 2020 01:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46943 * 240.00183 * 3 2 1 5 5 H 1.48501 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46757 * 120.00287 * 3 2 1 7 7 C 1.39938 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99782 * 196.65122 * 7 2 1 9 9 C 1.41435 * 119.99897 * 16.65514 * 7 2 1 10 10 C 1.40785 * 120.17192 * 205.10212 * 9 7 2 11 11 C 1.37715 * 120.03962 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.40835 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.35936 * 359.97438 * 12 11 10 14 14 C 1.47885 * 120.02389 * 180.02562 * 13 12 11 15 15 O 1.21555 * 120.00020 * 222.50849 * 14 13 12 16 16 N 1.34779 * 120.00255 * 42.50273 * 14 13 12 17 17 C 1.45343 * 119.59207 * 175.37236 * 16 14 13 18 18 C 1.51865 * 110.85566 * 217.34883 * 17 16 14 19 19 O 1.41197 * 113.23399 * 305.97423 * 18 17 16 20 20 C 1.42220 * 117.91851 * 47.99370 * 19 18 17 21 21 H 1.09007 * 115.52119 * 124.90807 * 20 19 18 22 22 C 1.53513 * 116.43388 * 268.85677 * 20 19 18 23 23 C 1.46376 * 120.06512 * 355.45307 * 16 14 13 24 24 H 1.08995 * 115.48253 * 23.12714 * 23 16 14 25 25 C 1.39030 * 119.95024 * 0.27577 * 13 12 11 26 26 H 0.96994 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.98660 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.80064 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.81833 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.34802 * 96.95198 * 17 16 14 31 31 H 1.09003 * 109.21007 * 337.64480 * 17 16 14 32 32 H 1.09001 * 108.73224 * 185.01347 * 18 17 16 33 33 H 1.08998 * 108.73735 * 66.94990 * 18 17 16 34 34 H 1.09004 * 117.49890 * 1.92728 * 22 20 19 35 35 H 1.09003 * 117.51944 * 216.90531 * 22 20 19 36 36 H 1.07996 * 120.20303 * 179.70360 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0540 -1.2316 0.2675 9 6 1.3452 -2.4109 -0.3521 10 6 1.8200 -3.6477 0.1243 11 6 1.1723 -4.8134 -0.2193 12 6 0.0537 -4.7794 -1.0333 13 6 -0.4325 -3.5600 -1.5161 14 6 -1.6288 -3.5322 -2.3850 15 8 -1.6538 -2.8095 -3.3621 16 7 -2.6915 -4.3083 -2.0937 17 6 -3.9001 -4.2003 -2.8939 18 6 -5.1378 -4.3471 -2.0263 19 8 -5.1382 -5.5275 -1.2515 20 6 -3.9611 -5.8433 -0.5185 21 1 -4.1016 -5.9992 0.5512 22 6 -2.9268 -6.7243 -1.2330 23 6 -2.6262 -5.2519 -0.9765 24 1 -1.8916 -5.0167 -0.2064 25 6 0.2129 -2.3745 -1.1828 26 1 -0.4850 0.8400 0.0004 27 1 2.6926 -3.6824 0.7596 28 1 1.5400 -5.7601 0.1480 29 1 -0.4471 -5.6994 -1.2964 30 1 -3.9011 -4.9818 -3.6537 31 1 -3.9201 -3.2267 -3.3836 32 1 -6.0178 -4.3505 -2.6695 33 1 -5.2000 -3.4891 -1.3570 34 1 -3.1427 -7.0227 -2.2590 35 1 -2.3906 -7.4594 -0.6327 36 1 -0.1561 -1.4311 -1.5573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590431640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:42 Heat of formation + Delta-G solvation = -36.064974 kcal Electronic energy + Delta-G solvation = -20913.341860 eV Core-core repulsion = 17748.782581 eV Total energy + Delta-G solvation = -3164.559279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.90758 -39.99235 -38.84089 -36.47206 -35.54136 -34.95618 -32.33380 -31.36634 -30.06960 -27.33716 -25.53435 -24.51744 -23.27866 -22.86040 -21.88186 -20.01810 -19.41150 -18.32111 -18.13087 -17.17419 -17.02748 -16.55241 -16.34271 -16.13712 -15.81457 -15.26460 -15.07339 -14.56759 -14.49473 -14.18573 -13.79788 -13.40771 -13.08448 -12.97000 -12.83152 -12.59601 -12.42648 -12.26577 -12.12945 -11.98189 -11.82298 -11.49194 -11.08849 -10.90766 -10.44084 -9.65226 -9.41586 -9.37218 -8.68857 -6.40227 0.44218 0.98609 1.35616 1.46454 1.49094 1.58591 1.83114 2.17541 2.43809 2.68127 2.93294 3.34399 3.53959 3.63800 3.71252 3.85150 4.06689 4.12732 4.32867 4.45401 4.56322 4.60566 4.67731 4.78164 4.85137 4.90694 5.06441 5.08624 5.17790 5.27921 5.38767 5.49736 5.81625 5.93621 6.01374 6.13649 6.21840 6.28487 6.57399 6.86229 6.91869 7.01793 8.28097 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.005404 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.093885 B = 5180.413828 C = 5771.626793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.072 3.928 10 C -0.216 4.216 11 C -0.091 4.091 12 C -0.199 4.199 13 C -0.130 4.130 14 C 0.568 3.432 15 O -0.584 6.584 16 N -0.578 5.578 17 C 0.070 3.930 18 C 0.063 3.937 19 O -0.360 6.360 20 C 0.019 3.981 21 H 0.163 0.837 22 C -0.176 4.176 23 C 0.028 3.972 24 H 0.147 0.853 25 C -0.135 4.135 26 H 0.286 0.714 27 H 0.110 0.890 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 -10.141 0.748 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.070 3.930 10 C -0.235 4.235 11 C -0.109 4.109 12 C -0.218 4.218 13 C -0.134 4.134 14 C 0.360 3.640 15 O -0.465 6.465 16 N -0.309 5.309 17 C -0.052 4.052 18 C -0.014 4.014 19 O -0.278 6.278 20 C -0.039 4.039 21 H 0.180 0.820 22 C -0.215 4.215 23 C -0.076 4.076 24 H 0.164 0.836 25 C -0.156 4.156 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.159 0.841 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.156 0.844 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.163 0.837 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.839 -9.707 0.238 12.480 hybrid contribution 0.552 1.410 -0.285 1.540 sum -7.288 -8.298 -0.047 11.044 Atomic orbital electron populations 1.69861 1.09177 1.30568 1.35840 1.26812 0.95456 1.04833 0.91234 0.85254 0.78755 0.75543 0.80237 1.18748 1.19613 1.17537 1.19851 0.98189 0.92064 1.42511 0.89767 1.17896 0.91571 0.93982 0.89601 1.21421 1.03723 0.92771 1.05616 1.20923 0.94844 0.97754 0.97345 1.20937 1.00736 0.95136 1.05023 1.19620 0.96405 0.95959 1.01372 1.18930 0.83600 0.77699 0.83796 1.90658 1.82725 1.42908 1.30245 1.46779 1.13272 1.38609 1.32239 1.21767 0.84577 1.04069 0.94783 1.22335 0.97607 0.87343 0.94089 1.87099 1.35293 1.43010 1.62418 1.23818 0.80684 1.02526 0.96913 0.81993 1.24084 1.01526 0.92478 1.03379 1.22705 1.01731 0.90892 0.92309 0.83623 1.21250 0.98743 0.95618 0.99991 0.90342 0.87177 0.84104 0.84728 0.90394 0.89525 0.84351 0.93687 0.88424 0.83660 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.09 10.94 21.83 0.24 -44.85 16 2 C 0.03 1.61 5.16 85.25 0.44 2.05 16 3 Si 0.98 39.17 29.59 68.60 2.03 41.20 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.50 -26.72 9.05 23.47 0.21 -26.51 16 8 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 9 C 0.07 3.85 5.57 -21.32 -0.12 3.73 16 10 C -0.22 -9.83 9.78 22.77 0.22 -9.61 16 11 C -0.09 -3.49 10.01 22.18 0.22 -3.27 16 12 C -0.20 -7.80 7.41 22.70 0.17 -7.64 16 13 C -0.13 -6.20 5.24 -20.14 -0.11 -6.31 16 14 C 0.57 25.87 7.29 86.80 0.63 26.50 16 15 O -0.58 -30.51 16.39 -3.89 -0.06 -30.57 16 16 N -0.58 -20.36 3.13 -807.47 -2.53 -22.89 16 17 C 0.07 2.06 6.21 86.22 0.54 2.60 16 18 C 0.06 1.48 6.91 71.61 0.49 1.97 16 19 O -0.36 -8.81 10.57 -148.08 -1.57 -10.37 16 20 C 0.02 0.43 7.15 30.77 0.22 0.65 16 21 H 0.16 2.81 8.14 -2.38 -0.02 2.79 16 22 C -0.18 -3.60 9.97 30.59 0.30 -3.29 16 23 C 0.03 0.79 4.34 44.84 0.19 0.99 16 24 H 0.15 4.48 5.53 -2.39 -0.01 4.47 16 25 C -0.14 -7.46 8.29 23.01 0.19 -7.27 16 26 H 0.29 14.33 8.30 -92.71 -0.77 13.57 16 27 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 28 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.14 4.33 6.04 -2.91 -0.02 4.31 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.80 7.19 -2.39 -0.02 2.78 16 32 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 5.62 6.18 -2.91 -0.02 5.60 16 Total: -1.00 -67.77 300.45 2.82 -64.95 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.10 Total: 27.96 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.61 Total: -25.41 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -2.29 Total: -67.74 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.63 Total: -40.95 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -67.77 2.82 -64.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590431640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds