Wall clock time and date at job start Mon Mar 30 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.94361 * 2 1 4 4 S 1.65599 * 119.99846 * 56.01182 * 3 2 1 5 5 O 1.42103 * 104.27241 * 181.06685 * 4 3 2 6 6 O 1.42096 * 104.27925 * 308.92896 * 4 3 2 7 7 C 1.81404 * 104.44832 * 65.00067 * 4 3 2 8 8 C 1.53005 * 109.46908 * 179.97438 * 7 4 3 9 9 C 1.52995 * 109.46827 * 179.97438 * 8 7 4 10 10 C 1.50704 * 109.47170 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99385 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99996 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47018 * 59.99882 * 14 12 10 16 16 H 1.48491 * 109.46830 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47108 * 299.99798 * 14 12 10 18 18 C 1.54637 * 111.03596 * 236.01208 * 2 1 3 19 19 C 1.51104 * 104.82203 * 266.65909 * 18 2 1 20 20 C 1.30525 * 111.10650 * 343.50481 * 19 18 2 21 21 C 1.51094 * 111.10287 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.47759 * 183.98699 * 1 2 3 23 23 H 1.09000 * 109.47061 * 303.98800 * 1 2 3 24 24 H 1.09001 * 109.47089 * 63.98556 * 1 2 3 25 25 H 0.97000 * 119.99347 * 236.01078 * 3 2 1 26 26 H 1.09001 * 109.46906 * 299.99430 * 7 4 3 27 27 H 1.08998 * 109.47007 * 59.99630 * 7 4 3 28 28 H 1.09002 * 109.46666 * 299.99958 * 8 7 4 29 29 H 1.09001 * 109.47115 * 59.99687 * 8 7 4 30 30 H 1.09002 * 109.47581 * 299.99542 * 9 8 7 31 31 H 1.09001 * 109.47411 * 60.00012 * 9 8 7 32 32 H 0.96996 * 119.99673 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.38719 * 147.78988 * 18 2 1 34 34 H 1.09000 * 110.38599 * 25.52408 * 18 2 1 35 35 H 1.08001 * 124.43953 * 163.48841 * 19 18 2 36 36 H 1.07999 * 124.44678 * 179.97438 * 20 19 18 37 37 H 1.08999 * 110.38926 * 135.24917 * 21 20 19 38 38 H 1.09008 * 110.38956 * 257.50891 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0536 1.3682 0.0000 4 16 1.6008 2.4281 1.1891 5 8 2.2709 3.6360 0.8555 6 8 0.1817 2.3565 1.2007 7 6 2.2864 1.7196 2.7119 8 6 1.9318 2.6193 3.8976 9 6 2.5094 2.0214 5.1820 10 6 2.1598 2.9072 6.3500 11 1 1.5835 3.8069 6.1918 12 6 2.5763 2.5697 7.6202 13 7 3.2784 1.4744 7.8127 14 14 2.1434 3.6682 9.0679 15 1 0.6668 3.7680 9.1892 16 1 2.7050 3.0885 10.3143 17 1 2.7149 5.0214 8.8507 18 6 2.0850 -0.8068 -1.1967 19 6 2.3033 -2.2006 -0.6553 20 6 2.3044 -2.2030 0.6499 21 6 2.0865 -0.8114 1.1966 22 1 -0.3634 -1.0251 0.0714 23 1 -0.3633 0.5745 0.8521 24 1 -0.3633 0.4507 -0.9236 25 1 2.6656 1.6532 -0.6966 26 1 1.8672 0.7261 2.8712 27 1 3.3702 1.6467 2.6229 28 1 2.3513 3.6127 3.7380 29 1 0.8479 2.6926 3.9867 30 1 2.0896 1.0282 5.3414 31 1 3.5933 1.9478 5.0931 32 1 3.5718 1.2372 8.7063 33 1 3.0282 -0.3799 -1.5377 34 1 1.3608 -0.8249 -2.0111 35 1 2.4400 -3.0794 -1.2681 36 1 2.4421 -3.0841 1.2591 37 1 1.3621 -0.8324 2.0109 38 1 3.0298 -0.3860 1.5395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594475226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:46 Heat of formation + Delta-G solvation = -65.817591 kcal Electronic energy + Delta-G solvation = -19618.973557 eV Core-core repulsion = 16588.568059 eV Total energy + Delta-G solvation = -3030.405498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67993 -36.89162 -35.76371 -34.69892 -33.99750 -32.21661 -29.55089 -28.78591 -27.64464 -25.76913 -23.71348 -20.92469 -20.16409 -19.40667 -18.86737 -17.24918 -16.80839 -16.57341 -15.79563 -15.48387 -15.20085 -14.49242 -14.27802 -13.78238 -13.61627 -13.07048 -12.65593 -12.42747 -12.37663 -12.21786 -12.05549 -11.93685 -11.79146 -11.65298 -11.46559 -11.32726 -11.19814 -10.89110 -10.80671 -10.52110 -10.40530 -9.93616 -9.75440 -9.33952 -9.13885 -9.06480 -8.40340 -6.05572 -4.08629 0.48374 2.04893 2.82529 3.32284 3.36165 3.39385 3.92748 4.16815 4.32952 4.42634 4.47807 4.73991 4.93008 5.02961 5.16425 5.18789 5.30239 5.31396 5.46162 5.47493 5.55979 5.70412 5.79475 5.90977 5.92705 6.09260 6.26459 6.31278 6.42237 6.46502 6.64851 6.87146 6.94278 7.56777 7.67016 7.92344 8.32987 8.97357 9.56085 11.05602 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.004553 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.696848 B = 6148.278462 C = 6842.276810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.171 3.829 3 N -1.112 6.112 4 S 2.598 3.402 5 O -0.966 6.966 6 O -0.957 6.957 7 C -0.616 4.616 8 C -0.105 4.105 9 C 0.031 3.969 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.094 4.094 19 C -0.171 4.171 20 C -0.150 4.150 21 C -0.136 4.136 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.415 0.585 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -7.503 -18.000 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 N -0.868 5.868 4 S 2.695 3.305 5 O -0.956 6.956 6 O -0.947 6.947 7 C -0.748 4.748 8 C -0.144 4.144 9 C -0.007 4.007 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.132 4.132 19 C -0.189 4.189 20 C -0.168 4.168 21 C -0.175 4.175 22 H 0.085 0.915 23 H 0.120 0.880 24 H 0.083 0.917 25 H 0.249 0.751 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.194 -6.838 -17.897 19.284 hybrid contribution 0.629 -0.038 0.853 1.061 sum -1.565 -6.877 -17.043 18.445 Atomic orbital electron populations 1.22610 0.92169 1.03168 1.05586 1.21004 0.94324 0.80549 0.95897 1.55697 1.63011 1.24009 1.44098 1.05342 0.75263 0.73743 0.76175 1.93573 1.76477 1.43007 1.82566 1.93517 1.28832 1.85920 1.86428 1.30832 1.13091 1.12887 1.17968 1.21500 1.01533 0.97131 0.94285 1.19051 0.96269 0.96259 0.89109 1.21220 1.34555 1.08647 0.92101 0.92439 1.25008 0.95005 0.95263 0.99009 1.69945 1.37123 1.24111 1.22267 0.86621 0.78834 0.80801 0.81571 1.20113 1.21248 1.20132 1.21593 1.01337 0.93033 0.97273 1.23153 1.02163 0.97380 0.96235 1.23176 1.00085 0.97399 0.96158 1.22400 1.02542 0.94170 0.98353 0.91464 0.88022 0.91734 0.75133 0.84943 0.85323 0.91678 0.91556 0.96116 0.96154 0.92855 0.89998 0.90348 0.85571 0.85346 0.89521 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.03 37.16 0.30 -1.68 16 2 C 0.17 1.77 1.10 -129.95 -0.14 1.63 16 3 N -1.11 -12.19 5.53 2.05 0.01 -12.18 16 4 S 2.60 38.21 5.43 -107.50 -0.58 37.62 16 5 O -0.97 -17.17 18.08 -57.54 -1.04 -18.21 16 6 O -0.96 -16.15 14.54 -57.54 -0.84 -16.99 16 7 C -0.62 -9.45 4.62 37.16 0.17 -9.28 16 8 C -0.11 -2.12 5.16 -26.73 -0.14 -2.25 16 9 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 10 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.09 -0.78 6.03 -26.82 -0.16 -0.94 16 19 C -0.17 -1.39 10.78 -35.70 -0.38 -1.78 16 20 C -0.15 -1.36 10.78 -35.70 -0.38 -1.75 16 21 C -0.14 -1.42 4.12 -26.68 -0.11 -1.53 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.10 1.35 5.28 -51.93 -0.27 1.08 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.41 3.69 8.43 -34.48 -0.29 3.40 16 26 H 0.13 1.82 5.31 -51.92 -0.28 1.55 16 27 H 0.13 1.77 8.10 -51.92 -0.42 1.35 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 0.61 7.82 -51.93 -0.41 0.20 16 34 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.09 0.92 6.80 -51.93 -0.35 0.56 16 38 H 0.09 0.95 6.98 -51.92 -0.36 0.59 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -33.78 315.51 -9.10 -42.87 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.72 Total: 1.81 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -1.40 Total: -30.46 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.75 Total: -37.91 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.88 Total: -35.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 38.21 SS G_CDS: -0.58 Total: 37.62 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.78 -9.10 -42.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594475226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.943 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds