Wall clock time and date at job start Mon Mar 30 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.94361 * 2 1 4 4 S 1.65599 * 119.99846 * 56.01182 * 3 2 1 5 5 O 1.42103 * 104.27241 * 181.06685 * 4 3 2 6 6 O 1.42096 * 104.27925 * 308.92896 * 4 3 2 7 7 C 1.81404 * 104.44832 * 65.00067 * 4 3 2 8 8 C 1.53005 * 109.46908 * 179.97438 * 7 4 3 9 9 C 1.52995 * 109.46827 * 179.97438 * 8 7 4 10 10 C 1.50704 * 109.47170 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99385 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99996 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47018 * 59.99882 * 14 12 10 16 16 H 1.48491 * 109.46830 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47108 * 299.99798 * 14 12 10 18 18 C 1.54637 * 111.03596 * 236.01208 * 2 1 3 19 19 C 1.51104 * 104.82203 * 266.65909 * 18 2 1 20 20 C 1.30525 * 111.10650 * 343.50481 * 19 18 2 21 21 C 1.51094 * 111.10287 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.47759 * 183.98699 * 1 2 3 23 23 H 1.09000 * 109.47061 * 303.98800 * 1 2 3 24 24 H 1.09001 * 109.47089 * 63.98556 * 1 2 3 25 25 H 0.97000 * 119.99347 * 236.01078 * 3 2 1 26 26 H 1.09001 * 109.46906 * 299.99430 * 7 4 3 27 27 H 1.08998 * 109.47007 * 59.99630 * 7 4 3 28 28 H 1.09002 * 109.46666 * 299.99958 * 8 7 4 29 29 H 1.09001 * 109.47115 * 59.99687 * 8 7 4 30 30 H 1.09002 * 109.47581 * 299.99542 * 9 8 7 31 31 H 1.09001 * 109.47411 * 60.00012 * 9 8 7 32 32 H 0.96996 * 119.99673 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.38719 * 147.78988 * 18 2 1 34 34 H 1.09000 * 110.38599 * 25.52408 * 18 2 1 35 35 H 1.08001 * 124.43953 * 163.48841 * 19 18 2 36 36 H 1.07999 * 124.44678 * 179.97438 * 20 19 18 37 37 H 1.08999 * 110.38926 * 135.24917 * 21 20 19 38 38 H 1.09008 * 110.38956 * 257.50891 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0536 1.3682 0.0000 4 16 1.6008 2.4281 1.1891 5 8 2.2709 3.6360 0.8555 6 8 0.1817 2.3565 1.2007 7 6 2.2864 1.7196 2.7119 8 6 1.9318 2.6193 3.8976 9 6 2.5094 2.0214 5.1820 10 6 2.1598 2.9072 6.3500 11 1 1.5835 3.8069 6.1918 12 6 2.5763 2.5697 7.6202 13 7 3.2784 1.4744 7.8127 14 14 2.1434 3.6682 9.0679 15 1 0.6668 3.7680 9.1892 16 1 2.7050 3.0885 10.3143 17 1 2.7149 5.0214 8.8507 18 6 2.0850 -0.8068 -1.1967 19 6 2.3033 -2.2006 -0.6553 20 6 2.3044 -2.2030 0.6499 21 6 2.0865 -0.8114 1.1966 22 1 -0.3634 -1.0251 0.0714 23 1 -0.3633 0.5745 0.8521 24 1 -0.3633 0.4507 -0.9236 25 1 2.6656 1.6532 -0.6966 26 1 1.8672 0.7261 2.8712 27 1 3.3702 1.6467 2.6229 28 1 2.3513 3.6127 3.7380 29 1 0.8479 2.6926 3.9867 30 1 2.0896 1.0282 5.3414 31 1 3.5933 1.9478 5.0931 32 1 3.5718 1.2372 8.7063 33 1 3.0282 -0.3799 -1.5377 34 1 1.3608 -0.8249 -2.0111 35 1 2.4400 -3.0794 -1.2681 36 1 2.4421 -3.0841 1.2591 37 1 1.3621 -0.8324 2.0109 38 1 3.0298 -0.3860 1.5395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594475226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:46 Heat of formation + Delta-G solvation = -89.282768 kcal Electronic energy + Delta-G solvation = -19619.991084 eV Core-core repulsion = 16588.568059 eV Total energy + Delta-G solvation = -3031.423025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45391 -38.18395 -37.07145 -36.48920 -34.85618 -34.18986 -30.42521 -29.97599 -29.02620 -26.56431 -25.58015 -22.53959 -21.16563 -20.39709 -19.82463 -18.61855 -18.24885 -17.68509 -17.23599 -16.64273 -16.47484 -16.07933 -15.68827 -14.67758 -14.62375 -14.37763 -14.08358 -14.00566 -13.58555 -13.33907 -13.21762 -13.06523 -12.98296 -12.89554 -12.72752 -12.63185 -12.62617 -12.37076 -12.16217 -11.98339 -11.69506 -11.45861 -11.36637 -11.12962 -10.56766 -10.47395 -9.76886 -8.22303 -6.33345 -0.73895 1.40397 1.40860 1.42852 1.50786 1.74234 2.40043 2.72216 3.11283 3.20312 3.40526 3.65657 3.74770 3.88568 3.97110 4.21315 4.33817 4.40823 4.46774 4.63172 4.73546 4.77144 4.87254 4.93954 5.00086 5.05977 5.06294 5.13345 5.27126 5.45230 5.52809 5.63034 5.67096 5.79471 6.01011 6.13533 6.19944 6.81915 7.35975 8.88965 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.004553 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.696848 B = 6148.278462 C = 6842.276810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.165 3.835 3 N -1.095 6.095 4 S 2.625 3.375 5 O -0.995 6.995 6 O -0.978 6.978 7 C -0.617 4.617 8 C -0.105 4.105 9 C 0.033 3.967 10 C -0.554 4.554 11 H 0.060 0.940 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.962 3.038 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.169 4.169 21 C -0.146 4.146 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.427 0.573 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.004 0.996 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 -7.890 -19.193 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.077 3.923 3 N -0.856 5.856 4 S 2.721 3.279 5 O -0.985 6.985 6 O -0.967 6.967 7 C -0.748 4.748 8 C -0.144 4.144 9 C -0.006 4.006 10 C -0.592 4.592 11 H 0.078 0.922 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.131 4.131 19 C -0.177 4.177 20 C -0.187 4.187 21 C -0.184 4.184 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.264 0.736 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.237 -7.214 -19.094 20.534 hybrid contribution 0.641 0.017 1.161 1.327 sum -1.596 -7.197 -17.933 19.389 Atomic orbital electron populations 1.22612 0.92834 1.03698 1.04711 1.21149 0.93919 0.79972 0.97276 1.55311 1.63180 1.24019 1.43069 1.04348 0.74372 0.73249 0.75950 1.93530 1.76949 1.45053 1.83006 1.93506 1.30199 1.86299 1.86736 1.30820 1.14485 1.12656 1.16821 1.21305 1.01301 0.97769 0.93994 1.18943 0.95173 0.95368 0.91087 1.21713 1.34706 1.09237 0.93519 0.92204 1.25912 0.94777 0.96682 1.02010 1.70061 1.38058 1.25722 1.23072 0.85548 0.78926 0.78973 0.77928 1.19214 1.20595 1.19297 1.21636 1.02266 0.92677 0.96517 1.23377 1.00409 0.97906 0.95978 1.23214 1.01785 0.96865 0.96819 1.22458 1.02244 0.95414 0.98294 0.90079 0.90327 0.91342 0.73563 0.83558 0.83747 0.91751 0.91444 0.97799 0.97976 0.92638 0.88627 0.88943 0.83422 0.84614 0.90402 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.03 71.98 0.58 -3.20 16 2 C 0.17 3.11 1.10 4.82 0.01 3.12 16 3 N -1.10 -22.24 5.53 -147.44 -0.82 -23.05 16 4 S 2.63 75.56 5.43 -56.49 -0.31 75.25 16 5 O -1.00 -34.74 18.08 -127.65 -2.31 -37.05 16 6 O -0.98 -32.70 14.54 -127.65 -1.86 -34.55 16 7 C -0.62 -18.84 4.62 71.98 0.33 -18.51 16 8 C -0.10 -4.27 5.16 30.59 0.16 -4.11 16 9 C 0.03 1.68 4.97 29.85 0.15 1.83 16 10 C -0.55 -31.56 9.11 25.60 0.23 -31.32 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 14 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 C -0.09 -1.25 6.03 30.53 0.18 -1.07 16 19 C -0.16 -2.11 10.78 26.26 0.28 -1.83 16 20 C -0.17 -2.75 10.78 26.26 0.28 -2.47 16 21 C -0.15 -2.86 4.12 30.63 0.13 -2.73 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 2.06 5.28 -2.39 -0.01 2.04 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.43 6.66 8.43 -96.74 -0.82 5.85 16 26 H 0.15 4.03 5.31 -2.39 -0.01 4.02 16 27 H 0.14 3.90 8.10 -2.39 -0.02 3.88 16 28 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.10 1.08 7.82 -2.39 -0.02 1.06 16 34 H 0.09 1.04 7.91 -2.39 -0.02 1.02 16 35 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.08 1.63 6.80 -2.39 -0.02 1.61 16 38 H 0.09 1.77 6.98 -2.38 -0.02 1.76 16 Total: -1.00 -72.17 315.51 0.05 -72.12 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.23 Total: 16.05 kcal Atomic # 6 Polarization: -62.36 SS G_CDS: 2.79 Total: -59.57 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -0.53 Total: -78.45 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -4.16 Total: -71.60 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 75.56 SS G_CDS: -0.31 Total: 75.25 kcal Total: -72.17 0.05 -72.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594475226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.161 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds