Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48498 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46990 * 299.99734 * 3 2 1 6 6 H 1.48500 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.37869 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00836 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47007 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46867 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54019 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54478 * 291.62512 * 11 10 9 14 14 N 1.65602 * 104.44613 * 180.02562 * 11 10 9 15 15 C 1.47693 * 134.80899 * 270.02588 * 14 11 10 16 16 C 1.54357 * 85.88780 * 204.67802 * 15 14 11 17 17 H 1.09005 * 113.12788 * 222.56313 * 16 15 14 18 18 C 1.51966 * 112.18715 * 94.01939 * 16 15 14 19 19 C 1.52505 * 111.46970 * 225.53680 * 18 16 15 20 20 C 1.53151 * 108.83719 * 57.47019 * 19 18 16 21 21 C 1.52583 * 108.72675 * 291.57188 * 20 19 18 22 22 C 1.47201 * 134.80809 * 90.00696 * 14 11 10 23 23 H 1.09002 * 111.18064 * 267.60178 * 22 14 11 24 24 H 0.97004 * 120.00617 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46861 * 60.00515 * 9 7 2 26 26 H 1.09001 * 109.47211 * 300.00346 * 9 7 2 27 27 H 1.08999 * 109.46912 * 60.00519 * 10 9 7 28 28 H 1.09001 * 109.47395 * 300.00206 * 10 9 7 29 29 H 1.09001 * 113.80718 * 90.44094 * 15 14 11 30 30 H 1.08997 * 113.80740 * 318.91715 * 15 14 11 31 31 H 1.09003 * 109.07482 * 346.04899 * 18 16 15 32 32 H 1.08997 * 109.08027 * 105.08784 * 18 16 15 33 33 H 1.08998 * 109.57521 * 177.27443 * 19 18 16 34 34 H 1.09004 * 109.57808 * 297.66214 * 19 18 16 35 35 H 1.09001 * 109.59447 * 51.34619 * 20 19 18 36 36 H 1.08999 * 109.59523 * 171.64727 * 20 19 18 37 37 H 1.09002 * 109.04084 * 177.33136 * 21 20 19 38 38 H 1.09003 * 109.04271 * 296.27595 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6649 -5.4193 -1.2386 13 8 0.6639 -5.4200 1.2354 14 7 2.5206 -6.3926 -0.0005 15 6 3.2648 -7.1210 -1.0478 16 6 3.4665 -8.2207 0.0164 17 1 4.4770 -8.6295 0.0235 18 6 2.4027 -9.3027 -0.0677 19 6 1.8559 -9.6562 1.3114 20 6 1.2927 -8.3883 1.9600 21 6 2.4496 -7.4460 2.2791 22 6 3.2604 -7.1191 1.0443 23 1 4.1909 -6.6097 1.2946 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 4.1887 -6.6299 -1.3534 30 1 2.6475 -7.4322 -1.8905 31 1 1.5846 -8.9498 -0.6957 32 1 2.8372 -10.1954 -0.5173 33 1 1.0635 -10.3979 1.2109 34 1 2.6582 -10.0577 1.9305 35 1 0.6033 -7.9005 1.2709 36 1 0.7674 -8.6500 2.8785 37 1 2.0505 -6.5219 2.6975 38 1 3.0999 -7.9179 3.0158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594788025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = -61.389555 kcal Electronic energy + Delta-G solvation = -20007.174477 eV Core-core repulsion = 16976.960993 eV Total energy + Delta-G solvation = -3030.213484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50792 -36.52129 -35.36288 -34.75126 -33.86940 -31.40933 -31.13236 -28.30273 -25.73543 -25.44420 -23.10171 -21.55299 -21.35520 -19.33405 -17.86874 -17.13503 -16.67100 -16.02554 -15.81753 -15.15872 -14.62057 -14.53277 -14.34754 -13.97322 -13.44792 -13.17800 -13.00283 -12.53938 -12.48322 -11.78160 -11.74147 -11.69372 -11.53616 -11.44498 -11.22551 -11.08975 -10.95100 -10.88970 -10.57865 -10.37655 -10.35253 -10.31302 -9.91523 -9.74555 -9.31044 -8.68260 -8.50476 -6.12091 -4.17666 0.81058 3.01543 3.25154 3.32216 3.35856 4.21434 4.32628 4.39812 4.48897 4.55437 4.71352 4.99501 5.01254 5.19080 5.22966 5.27425 5.40309 5.42869 5.48130 5.56895 5.63101 5.74748 5.77042 5.84996 5.90823 6.05984 6.13986 6.22865 6.25584 6.35406 6.48475 6.51856 6.71576 7.30966 7.37266 7.81061 8.18633 8.85954 9.47120 10.99021 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.004582 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.823162 B = 6109.128466 C = 6194.014476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.595 4.595 11 S 2.607 3.393 12 O -0.965 6.965 13 O -0.957 6.957 14 N -1.037 6.037 15 C 0.123 3.877 16 C -0.109 4.109 17 H 0.085 0.915 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.132 4.132 22 C 0.166 3.834 23 H 0.083 0.917 24 H 0.264 0.736 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.749 -18.661 1.598 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.728 4.728 11 S 2.707 3.293 12 O -0.956 6.956 13 O -0.947 6.947 14 N -0.874 5.874 15 C -0.003 4.003 16 C -0.129 4.129 17 H 0.103 0.897 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.170 4.170 22 C 0.060 3.940 23 H 0.101 0.899 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.485 -18.576 1.586 20.090 hybrid contribution 1.072 1.568 -0.066 1.901 sum 8.557 -17.008 1.520 19.100 Atomic orbital electron populations 1.69964 1.06125 1.27077 1.49728 1.25070 0.94969 0.99548 0.94910 0.86415 0.79926 0.83177 0.77785 1.19659 1.20765 1.20759 1.21051 0.93071 0.89820 1.51952 0.92068 1.18954 0.92717 0.90688 0.98739 1.30559 1.13758 1.18848 1.09653 1.05232 0.74477 0.75501 0.74099 1.93525 1.71134 1.85245 1.45650 1.93520 1.71124 1.85024 1.45061 1.60661 1.55871 1.55238 1.15676 1.22940 0.95366 0.90096 0.91905 1.22518 0.99826 0.94631 0.95965 0.89707 1.21059 0.97833 0.97085 0.97908 1.21462 1.00164 0.97708 0.96231 1.21393 0.97707 0.95157 1.00934 1.21350 0.97476 1.01790 0.96426 1.21509 0.93735 0.89863 0.88929 0.89933 0.92583 0.94996 0.94896 0.86538 0.86638 0.90122 0.89807 0.91561 0.91772 0.92017 0.91959 0.91451 0.91859 0.89418 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.60 -12.00 6.12 37.16 0.23 -11.77 16 11 S 2.61 49.12 5.94 -107.50 -0.64 48.48 16 12 O -0.96 -21.10 18.04 -57.54 -1.04 -22.13 16 13 O -0.96 -19.80 14.80 -57.54 -0.85 -20.65 16 14 N -1.04 -14.52 3.77 -114.32 -0.43 -14.95 16 15 C 0.12 1.32 8.35 -2.87 -0.02 1.29 16 16 C -0.11 -1.00 4.19 -90.97 -0.38 -1.38 16 17 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 18 C -0.10 -0.95 5.60 -27.51 -0.15 -1.11 16 19 C -0.12 -1.12 5.92 -26.91 -0.16 -1.28 16 20 C -0.11 -1.40 5.72 -26.87 -0.15 -1.55 16 21 C -0.13 -1.57 5.01 -27.81 -0.14 -1.71 16 22 C 0.17 1.85 4.33 -69.08 -0.30 1.55 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 28 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16 31 H 0.07 0.74 7.55 -51.93 -0.39 0.35 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.07 1.02 7.18 -51.93 -0.37 0.64 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.24 6.75 -51.93 -0.35 0.89 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -34.44 314.50 -10.27 -44.72 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.13 Total: -1.65 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -1.63 Total: -28.82 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.31 Total: -41.12 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.89 Total: -42.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.64 Total: 48.48 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.44 -10.27 -44.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594788025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.673 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds