Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48498 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46990 * 299.99734 * 3 2 1 6 6 H 1.48500 * 109.47530 * 60.00155 * 3 2 1 7 7 C 1.37869 * 120.00508 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00836 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47007 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46867 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54019 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54478 * 291.62512 * 11 10 9 14 14 N 1.65602 * 104.44613 * 180.02562 * 11 10 9 15 15 C 1.47693 * 134.80899 * 270.02588 * 14 11 10 16 16 C 1.54357 * 85.88780 * 204.67802 * 15 14 11 17 17 H 1.09005 * 113.12788 * 222.56313 * 16 15 14 18 18 C 1.51966 * 112.18715 * 94.01939 * 16 15 14 19 19 C 1.52505 * 111.46970 * 225.53680 * 18 16 15 20 20 C 1.53151 * 108.83719 * 57.47019 * 19 18 16 21 21 C 1.52583 * 108.72675 * 291.57188 * 20 19 18 22 22 C 1.47201 * 134.80809 * 90.00696 * 14 11 10 23 23 H 1.09002 * 111.18064 * 267.60178 * 22 14 11 24 24 H 0.97004 * 120.00617 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46861 * 60.00515 * 9 7 2 26 26 H 1.09001 * 109.47211 * 300.00346 * 9 7 2 27 27 H 1.08999 * 109.46912 * 60.00519 * 10 9 7 28 28 H 1.09001 * 109.47395 * 300.00206 * 10 9 7 29 29 H 1.09001 * 113.80718 * 90.44094 * 15 14 11 30 30 H 1.08997 * 113.80740 * 318.91715 * 15 14 11 31 31 H 1.09003 * 109.07482 * 346.04899 * 18 16 15 32 32 H 1.08997 * 109.08027 * 105.08784 * 18 16 15 33 33 H 1.08998 * 109.57521 * 177.27443 * 19 18 16 34 34 H 1.09004 * 109.57808 * 297.66214 * 19 18 16 35 35 H 1.09001 * 109.59447 * 51.34619 * 20 19 18 36 36 H 1.08999 * 109.59523 * 171.64727 * 20 19 18 37 37 H 1.09002 * 109.04084 * 177.33136 * 21 20 19 38 38 H 1.09003 * 109.04271 * 296.27595 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6649 -5.4193 -1.2386 13 8 0.6639 -5.4200 1.2354 14 7 2.5206 -6.3926 -0.0005 15 6 3.2648 -7.1210 -1.0478 16 6 3.4665 -8.2207 0.0164 17 1 4.4770 -8.6295 0.0235 18 6 2.4027 -9.3027 -0.0677 19 6 1.8559 -9.6562 1.3114 20 6 1.2927 -8.3883 1.9600 21 6 2.4496 -7.4460 2.2791 22 6 3.2604 -7.1191 1.0443 23 1 4.1909 -6.6097 1.2946 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 4.1887 -6.6299 -1.3534 30 1 2.6475 -7.4322 -1.8905 31 1 1.5846 -8.9498 -0.6957 32 1 2.8372 -10.1954 -0.5173 33 1 1.0635 -10.3979 1.2109 34 1 2.6582 -10.0577 1.9305 35 1 0.6033 -7.9005 1.2709 36 1 0.7674 -8.6500 2.8785 37 1 2.0505 -6.5219 2.6975 38 1 3.0999 -7.9179 3.0158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594788025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = -85.756802 kcal Electronic energy + Delta-G solvation = -20008.231120 eV Core-core repulsion = 16976.960993 eV Total energy + Delta-G solvation = -3031.270127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38477 -38.13031 -36.97510 -35.93850 -35.65549 -33.16127 -32.24142 -29.28897 -27.61849 -26.50263 -24.03382 -23.45368 -22.21404 -20.45514 -19.31149 -18.65070 -18.03276 -17.34240 -17.22543 -16.63312 -16.45981 -15.75261 -15.30878 -15.08803 -14.81177 -14.55865 -14.25428 -14.01604 -13.76860 -13.39153 -13.17852 -13.02133 -12.98166 -12.81542 -12.64329 -12.54874 -12.31440 -12.16812 -12.10977 -11.88504 -11.74544 -11.44042 -11.22275 -11.06455 -10.75030 -10.70285 -9.81369 -8.30220 -6.45573 -0.68977 1.37655 1.39087 1.52519 1.74089 2.34816 2.89730 3.02582 3.08759 3.45350 3.60490 3.90820 4.00063 4.02418 4.12771 4.21544 4.38883 4.52235 4.62625 4.65492 4.68691 4.71948 4.81875 4.95189 5.01560 5.12487 5.15035 5.20092 5.21702 5.27436 5.31531 5.44078 5.51395 5.61394 5.63270 5.80013 6.01479 6.68044 7.25140 8.82455 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.004582 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.823162 B = 6109.128466 C = 6194.014476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.978 3.022 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.596 4.596 11 S 2.626 3.374 12 O -1.003 7.003 13 O -0.984 6.984 14 N -1.038 6.038 15 C 0.114 3.886 16 C -0.090 4.090 17 H 0.131 0.869 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.137 4.137 22 C 0.158 3.842 23 H 0.112 0.888 24 H 0.268 0.732 25 H 0.001 0.999 26 H 0.004 0.996 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.430 -20.003 1.775 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.801 3.199 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.727 4.727 11 S 2.726 3.274 12 O -0.994 6.994 13 O -0.974 6.974 14 N -0.879 5.879 15 C -0.011 4.011 16 C -0.111 4.111 17 H 0.149 0.851 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.175 4.175 22 C 0.053 3.947 23 H 0.130 0.870 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.171 -19.907 1.760 22.895 hybrid contribution -0.073 1.854 -0.096 1.858 sum 11.098 -18.052 1.665 21.256 Atomic orbital electron populations 1.70115 1.08196 1.28395 1.50790 1.26173 0.95895 1.04073 0.94166 0.85209 0.79089 0.77640 0.77965 1.17876 1.20161 1.20120 1.21542 0.93918 0.90818 1.51736 0.90732 1.18799 0.93586 0.93387 0.95949 1.30495 1.12844 1.17885 1.11446 1.04279 0.75014 0.75441 0.72697 1.93463 1.72930 1.85791 1.47185 1.93480 1.72672 1.85347 1.45912 1.60443 1.55876 1.52964 1.18658 1.23392 0.95756 0.90298 0.91618 1.22487 1.01856 0.93326 0.93451 0.85124 1.21142 0.97372 0.98398 0.97479 1.21442 1.00967 0.96103 0.96443 1.21439 0.97550 0.96665 1.00308 1.21410 0.97903 1.00496 0.97710 1.22006 0.93885 0.90406 0.88412 0.86990 0.92288 0.98054 0.97755 0.84599 0.84850 0.87055 0.90586 0.94336 0.88883 0.91734 0.89371 0.95423 0.91882 0.92575 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.29 21.44 0.28 -58.13 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.60 -24.38 6.12 71.98 0.44 -23.94 16 11 S 2.63 102.54 5.94 -56.49 -0.34 102.21 16 12 O -1.00 -46.05 18.04 -127.65 -2.30 -48.35 16 13 O -0.98 -43.09 14.80 -127.65 -1.89 -44.98 16 14 N -1.04 -27.82 3.77 -515.59 -1.94 -29.76 16 15 C 0.11 2.11 8.35 86.48 0.72 2.84 16 16 C -0.09 -1.27 4.19 -10.96 -0.05 -1.32 16 17 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 18 C -0.11 -1.69 5.60 30.09 0.17 -1.52 16 19 C -0.11 -1.85 5.92 30.48 0.18 -1.67 16 20 C -0.12 -2.93 5.72 30.51 0.17 -2.76 16 21 C -0.14 -3.03 5.01 29.90 0.15 -2.88 16 22 C 0.16 3.03 4.33 43.87 0.19 3.22 16 23 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 28 H 0.13 4.88 8.14 -2.39 -0.02 4.86 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.55 7.81 -2.39 -0.02 1.53 16 31 H 0.04 0.83 7.55 -2.39 -0.02 0.81 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.04 8.12 -2.38 -0.02 1.02 16 35 H 0.03 0.87 7.18 -2.39 -0.02 0.85 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.60 6.75 -2.39 -0.02 1.59 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -79.52 314.50 -0.31 -79.83 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.02 Total: 10.49 kcal Atomic # 6 Polarization: -60.26 SS G_CDS: 2.82 Total: -57.43 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.66 Total: -87.89 kcal Atomic # 8 Polarization: -89.14 SS G_CDS: -4.19 Total: -93.34 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 102.54 SS G_CDS: -0.34 Total: 102.21 kcal Total: -79.52 -0.31 -79.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594788025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.922 kcal (2) G-P(sol) polarization free energy of solvation -79.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds