Wall clock time and date at job start Mon Mar 30 2020 01:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47123 * 90.00295 * 3 2 1 5 5 H 1.48500 * 109.47220 * 210.00244 * 3 2 1 6 6 H 1.48504 * 109.47070 * 330.00451 * 3 2 1 7 7 C 1.37878 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47340 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47117 * 180.02562 * 11 10 9 13 13 O 1.42102 * 110.54079 * 284.33320 * 12 11 10 14 14 O 1.42098 * 110.54277 * 61.08478 * 12 11 10 15 15 N 1.65596 * 104.44727 * 172.71224 * 12 11 10 16 16 C 1.46497 * 120.00274 * 63.59985 * 15 12 11 17 17 C 1.53004 * 119.30081 * 223.77601 * 16 15 12 18 18 C 1.53005 * 60.37626 * 111.30936 * 17 16 15 19 19 H 1.09004 * 119.75071 * 248.88289 * 18 17 16 20 20 C 1.54266 * 118.19817 * 93.62113 * 18 17 16 21 21 C 1.54890 * 104.19182 * 272.20992 * 20 18 17 22 22 C 1.54267 * 117.41235 * 68.12334 * 16 15 12 23 23 H 0.96999 * 120.00183 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47338 * 300.00355 * 9 7 2 25 25 H 1.09004 * 109.47352 * 59.99968 * 9 7 2 26 26 H 1.09000 * 109.47386 * 300.00464 * 10 9 7 27 27 H 1.09001 * 109.47193 * 60.00236 * 10 9 7 28 28 H 1.09000 * 109.47122 * 300.00456 * 11 10 9 29 29 H 1.08998 * 109.46915 * 60.00428 * 11 10 9 30 30 H 0.97008 * 120.00209 * 243.59817 * 15 12 11 31 31 H 1.08990 * 117.46254 * 218.90666 * 17 16 15 32 32 H 1.09005 * 117.45628 * 3.71583 * 17 16 15 33 33 H 1.08999 * 110.48542 * 30.88914 * 20 18 17 34 34 H 1.09002 * 110.48263 * 153.40243 * 20 18 17 35 35 H 1.09006 * 110.75320 * 156.26106 * 21 20 18 36 36 H 1.09000 * 110.75886 * 279.43961 * 21 20 18 37 37 H 1.09000 * 110.48658 * 2.31090 * 22 16 15 38 38 H 1.09006 * 110.48814 * 124.95227 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 16 2.6591 -6.3658 -0.0032 13 8 3.2335 -6.5301 -1.2926 14 8 3.4722 -6.3273 1.1615 15 7 1.7186 -7.7136 0.1995 16 6 0.7319 -8.0785 -0.8199 17 6 -0.6659 -8.5227 -0.3841 18 6 -0.4884 -7.1864 -1.1080 19 1 -0.6483 -6.2532 -0.5678 20 6 -0.6623 -7.1589 -2.6405 21 6 0.7465 -7.4960 -3.1887 22 6 1.2656 -8.5502 -2.1883 23 1 -0.4850 -0.8400 0.0004 24 1 0.6247 -2.5571 0.8896 25 1 0.6240 -2.5567 -0.8903 26 1 2.8713 -3.6039 -0.8922 27 1 2.8726 -3.6047 0.8877 28 1 0.8540 -5.0455 0.8877 29 1 0.8533 -5.0442 -0.8923 30 1 1.8211 -8.2617 0.9934 31 1 -1.1304 -9.3373 -0.9395 32 1 -0.8940 -8.4907 0.6814 33 1 -1.3847 -7.9117 -2.9560 34 1 -0.9756 -6.1686 -2.9711 35 1 0.6805 -7.9109 -4.1946 36 1 1.3866 -6.6138 -3.1777 37 1 2.3552 -8.5813 -2.1827 38 1 0.8564 -9.5285 -2.4408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:20 Heat of formation + Delta-G solvation = -71.196513 kcal Electronic energy + Delta-G solvation = -19778.456856 eV Core-core repulsion = 16747.818111 eV Total energy + Delta-G solvation = -3030.638746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01625 -36.88486 -35.78991 -34.94503 -33.55790 -32.30771 -31.30896 -27.99417 -27.42455 -23.51405 -22.89426 -21.18984 -20.71017 -20.04796 -19.01542 -17.47104 -17.03022 -16.78879 -15.87572 -15.50711 -15.13690 -14.45285 -13.97865 -13.76757 -13.53353 -13.35258 -13.13905 -12.50874 -12.09462 -12.05618 -12.04983 -11.90199 -11.79707 -11.58877 -11.28351 -11.18484 -10.98143 -10.82399 -10.79409 -10.60793 -10.15242 -10.11543 -10.09155 -9.79863 -9.30319 -8.59181 -8.37395 -6.41581 -4.11346 0.41072 2.71563 3.21048 3.42777 3.46199 3.62115 3.86187 4.21298 4.35706 4.36820 4.51273 4.58269 4.73649 4.96591 5.08274 5.20068 5.23742 5.28168 5.36533 5.37536 5.45039 5.55954 5.75754 5.78932 5.93658 5.96421 6.02040 6.09042 6.14428 6.26666 6.31634 6.70588 6.88355 7.25604 7.37765 8.12864 8.41074 8.82473 9.60911 10.99228 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.004796 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.625665 B = 5837.310758 C = 6357.971180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.607 4.607 8 H 0.052 0.948 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.614 4.614 12 S 2.602 3.398 13 O -0.955 6.955 14 O -0.964 6.964 15 N -1.085 6.085 16 C 0.083 3.917 17 C -0.130 4.130 18 C -0.180 4.180 19 H 0.122 0.878 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.099 4.099 23 H 0.268 0.732 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.415 0.585 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -19.101 -2.967 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.645 4.645 8 H 0.070 0.930 9 C -0.020 4.020 10 C -0.136 4.136 11 C -0.746 4.746 12 S 2.698 3.302 13 O -0.944 6.944 14 O -0.955 6.955 15 N -0.840 5.840 16 C -0.008 4.008 17 C -0.169 4.169 18 C -0.200 4.200 19 H 0.140 0.860 20 C -0.137 4.137 21 C -0.167 4.167 22 C -0.138 4.138 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.250 0.750 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.421 -17.371 -3.214 17.723 hybrid contribution -0.528 -1.699 0.622 1.884 sum -1.949 -19.070 -2.592 19.344 Atomic orbital electron populations 1.70768 1.06895 1.30556 1.46645 1.25881 0.96522 1.02802 0.93568 0.83504 0.74725 0.74935 0.76849 1.21364 1.21347 1.20932 1.22096 0.94559 0.91873 1.55983 0.92975 1.19177 0.94173 0.92278 0.96393 1.21347 0.99035 0.91094 1.02143 1.30705 1.16629 1.16159 1.11073 1.05315 0.75419 0.75113 0.74373 1.93555 1.74909 1.84518 1.41466 1.93581 1.65367 1.86195 1.50329 1.55067 1.54449 1.43888 1.30575 1.21422 0.83178 1.05753 0.90427 1.23335 0.95020 0.97308 1.01233 1.24078 1.02293 0.96208 0.97444 0.86004 1.22027 0.97587 1.02622 0.91455 1.22641 0.95719 0.99835 0.98465 1.22149 1.02483 0.98630 0.90556 0.92150 0.97100 0.97024 0.91598 0.91332 0.85589 0.85192 0.75022 0.87899 0.87718 0.90950 0.90447 0.90775 0.90051 0.89229 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.81 13.65 55.43 0.76 -27.05 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.61 -17.38 9.11 -34.44 -0.31 -17.70 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.46 4.28 -27.89 -0.12 0.34 16 10 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 11 C -0.61 -9.69 4.87 37.16 0.18 -9.51 16 12 S 2.60 39.58 5.45 -107.50 -0.59 39.00 16 13 O -0.95 -16.50 15.87 -57.54 -0.91 -17.41 16 14 O -0.96 -17.61 18.08 -57.54 -1.04 -18.65 16 15 N -1.09 -12.42 5.98 1.44 0.01 -12.41 16 16 C 0.08 0.87 2.95 -130.70 -0.39 0.48 16 17 C -0.13 -1.06 10.06 -26.73 -0.27 -1.33 16 18 C -0.18 -1.82 5.68 -89.50 -0.51 -2.32 16 19 H 0.12 1.29 6.40 -51.93 -0.33 0.96 16 20 C -0.10 -0.94 6.63 -25.07 -0.17 -1.11 16 21 C -0.13 -1.35 6.88 -25.04 -0.17 -1.52 16 22 C -0.10 -1.04 5.85 -25.37 -0.15 -1.19 16 23 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 24 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 25 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 29 H 0.13 1.87 6.38 -51.93 -0.33 1.54 16 30 H 0.42 3.90 8.92 -34.47 -0.31 3.59 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.02 7.81 -51.93 -0.41 0.62 16 37 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -34.71 318.07 -10.08 -44.79 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.88 Total: 2.25 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: -2.14 Total: -35.64 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.77 Total: -39.46 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.95 Total: -36.06 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Atomic # 16 Polarization: 39.58 SS G_CDS: -0.59 Total: 39.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.71 -10.08 -44.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.407 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds