Wall clock time and date at job start Mon Mar 30 2020 01:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48501 * 109.47123 * 90.00295 * 3 2 1 5 5 H 1.48500 * 109.47220 * 210.00244 * 3 2 1 6 6 H 1.48504 * 109.47070 * 330.00451 * 3 2 1 7 7 C 1.37878 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47340 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47117 * 180.02562 * 11 10 9 13 13 O 1.42102 * 110.54079 * 284.33320 * 12 11 10 14 14 O 1.42098 * 110.54277 * 61.08478 * 12 11 10 15 15 N 1.65596 * 104.44727 * 172.71224 * 12 11 10 16 16 C 1.46497 * 120.00274 * 63.59985 * 15 12 11 17 17 C 1.53004 * 119.30081 * 223.77601 * 16 15 12 18 18 C 1.53005 * 60.37626 * 111.30936 * 17 16 15 19 19 H 1.09004 * 119.75071 * 248.88289 * 18 17 16 20 20 C 1.54266 * 118.19817 * 93.62113 * 18 17 16 21 21 C 1.54890 * 104.19182 * 272.20992 * 20 18 17 22 22 C 1.54267 * 117.41235 * 68.12334 * 16 15 12 23 23 H 0.96999 * 120.00183 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47338 * 300.00355 * 9 7 2 25 25 H 1.09004 * 109.47352 * 59.99968 * 9 7 2 26 26 H 1.09000 * 109.47386 * 300.00464 * 10 9 7 27 27 H 1.09001 * 109.47193 * 60.00236 * 10 9 7 28 28 H 1.09000 * 109.47122 * 300.00456 * 11 10 9 29 29 H 1.08998 * 109.46915 * 60.00428 * 11 10 9 30 30 H 0.97008 * 120.00209 * 243.59817 * 15 12 11 31 31 H 1.08990 * 117.46254 * 218.90666 * 17 16 15 32 32 H 1.09005 * 117.45628 * 3.71583 * 17 16 15 33 33 H 1.08999 * 110.48542 * 30.88914 * 20 18 17 34 34 H 1.09002 * 110.48263 * 153.40243 * 20 18 17 35 35 H 1.09006 * 110.75320 * 156.26106 * 21 20 18 36 36 H 1.09000 * 110.75886 * 279.43961 * 21 20 18 37 37 H 1.09000 * 110.48658 * 2.31090 * 22 16 15 38 38 H 1.09006 * 110.48814 * 124.95227 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 16 2.6591 -6.3658 -0.0032 13 8 3.2335 -6.5301 -1.2926 14 8 3.4722 -6.3273 1.1615 15 7 1.7186 -7.7136 0.1995 16 6 0.7319 -8.0785 -0.8199 17 6 -0.6659 -8.5227 -0.3841 18 6 -0.4884 -7.1864 -1.1080 19 1 -0.6483 -6.2532 -0.5678 20 6 -0.6623 -7.1589 -2.6405 21 6 0.7465 -7.4960 -3.1887 22 6 1.2656 -8.5502 -2.1883 23 1 -0.4850 -0.8400 0.0004 24 1 0.6247 -2.5571 0.8896 25 1 0.6240 -2.5567 -0.8903 26 1 2.8713 -3.6039 -0.8922 27 1 2.8726 -3.6047 0.8877 28 1 0.8540 -5.0455 0.8877 29 1 0.8533 -5.0442 -0.8923 30 1 1.8211 -8.2617 0.9934 31 1 -1.1304 -9.3373 -0.9395 32 1 -0.8940 -8.4907 0.6814 33 1 -1.3847 -7.9117 -2.9560 34 1 -0.9756 -6.1686 -2.9711 35 1 0.6805 -7.9109 -4.1946 36 1 1.3866 -6.6138 -3.1777 37 1 2.3552 -8.5813 -2.1827 38 1 0.8564 -9.5285 -2.4408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:20 Heat of formation + Delta-G solvation = -95.528303 kcal Electronic energy + Delta-G solvation = -19779.511962 eV Core-core repulsion = 16747.818111 eV Total energy + Delta-G solvation = -3031.693851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79571 -38.22802 -37.14094 -36.82326 -34.49582 -34.26919 -32.09982 -29.42318 -28.64153 -25.51302 -23.65318 -22.88780 -21.54734 -21.05581 -20.13563 -19.08201 -18.52636 -17.83541 -17.28109 -16.77985 -15.95688 -15.87669 -15.68291 -15.38301 -14.88787 -14.23669 -13.98968 -13.95249 -13.68829 -13.51420 -13.31975 -13.21405 -13.11084 -12.99185 -12.63442 -12.56255 -12.13126 -11.96105 -11.95304 -11.91196 -11.75755 -11.60962 -11.38106 -10.90741 -10.70997 -10.57970 -10.17120 -8.73188 -6.44215 -0.84703 1.51368 1.60029 1.61386 1.78438 2.47168 2.52920 2.62048 3.11674 3.14696 3.47622 3.53194 3.61760 3.73744 3.85982 3.98411 4.18503 4.28871 4.46326 4.47136 4.51470 4.66883 4.73182 4.83280 4.85105 4.87166 5.04229 5.14621 5.20105 5.22561 5.27173 5.29708 5.33775 5.47322 5.93037 6.05816 6.13836 6.53349 7.36797 8.68394 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.004796 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.625665 B = 5837.310758 C = 6357.971180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.118 2.882 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.280 1.280 7 C -0.630 4.630 8 H 0.050 0.950 9 C 0.017 3.983 10 C -0.097 4.097 11 C -0.613 4.613 12 S 2.625 3.375 13 O -0.976 6.976 14 O -0.995 6.995 15 N -1.070 6.070 16 C 0.061 3.939 17 C -0.101 4.101 18 C -0.196 4.196 19 H 0.113 0.887 20 C -0.097 4.097 21 C -0.134 4.134 22 C -0.101 4.101 23 H 0.258 0.742 24 H 0.000 1.000 25 H 0.000 1.000 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.427 0.573 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -20.478 -2.915 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.939 3.061 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.205 1.205 7 C -0.667 4.667 8 H 0.068 0.932 9 C -0.021 4.021 10 C -0.136 4.136 11 C -0.743 4.743 12 S 2.721 3.279 13 O -0.966 6.966 14 O -0.985 6.985 15 N -0.829 5.829 16 C -0.029 4.029 17 C -0.140 4.140 18 C -0.216 4.216 19 H 0.131 0.869 20 C -0.134 4.134 21 C -0.171 4.171 22 C -0.140 4.140 23 H 0.067 0.933 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.015 -18.764 -3.150 19.133 hybrid contribution -0.383 -1.347 0.582 1.517 sum -2.398 -20.111 -2.568 20.416 Atomic orbital electron populations 1.70892 1.07809 1.30014 1.48490 1.27409 0.96638 1.06723 0.92500 0.82926 0.74197 0.71063 0.77923 1.19672 1.19570 1.20496 1.22571 0.94891 0.93622 1.55663 0.93156 1.19108 0.94648 0.93175 0.95184 1.21164 0.98373 0.92091 1.01963 1.30660 1.16860 1.14063 1.12697 1.04407 0.75043 0.75285 0.73191 1.93532 1.75656 1.84928 1.42495 1.93535 1.66755 1.86840 1.51400 1.54628 1.54422 1.42301 1.31512 1.21700 0.83584 1.07165 0.90440 1.23510 0.91920 0.96418 1.02129 1.24184 1.02396 0.97007 0.98010 0.86943 1.22034 0.97334 1.02967 0.91101 1.22663 0.95912 0.98878 0.99694 1.22169 1.01241 0.99932 0.90621 0.93288 0.98191 0.98122 0.91807 0.91634 0.83735 0.84001 0.73518 0.85439 0.86426 0.88543 0.91330 0.89149 0.93021 0.91462 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.65 21.45 0.29 -57.41 16 2 C -0.03 -2.03 5.46 84.65 0.46 -1.57 16 3 Si 1.12 50.72 29.90 68.60 2.05 52.78 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.63 -36.58 9.11 25.60 0.23 -36.35 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.02 0.88 4.28 29.84 0.13 1.01 16 10 C -0.10 -4.06 5.16 30.59 0.16 -3.90 16 11 C -0.61 -19.23 4.87 71.98 0.35 -18.88 16 12 S 2.63 78.96 5.45 -56.49 -0.31 78.65 16 13 O -0.98 -33.96 15.87 -127.65 -2.03 -35.99 16 14 O -0.99 -36.06 18.08 -127.65 -2.31 -38.37 16 15 N -1.07 -22.79 5.98 -149.36 -0.89 -23.69 16 16 C 0.06 1.15 2.95 4.33 0.01 1.16 16 17 C -0.10 -1.27 10.06 30.60 0.31 -0.96 16 18 C -0.20 -3.53 5.68 -10.07 -0.06 -3.59 16 19 H 0.11 2.24 6.40 -2.39 -0.02 2.22 16 20 C -0.10 -1.66 6.63 31.67 0.21 -1.45 16 21 C -0.13 -2.66 6.88 31.69 0.22 -2.44 16 22 C -0.10 -1.93 5.85 31.47 0.18 -1.75 16 23 H 0.26 15.91 7.22 -92.71 -0.67 15.24 16 24 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 25 H 0.00 0.03 8.01 -2.38 -0.02 0.01 16 26 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 29 H 0.14 4.10 6.38 -2.39 -0.02 4.08 16 30 H 0.43 7.16 8.92 -96.74 -0.86 6.29 16 31 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.32 7.81 -2.39 -0.02 1.30 16 37 H 0.07 1.60 7.10 -2.39 -0.02 1.58 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -75.15 318.07 -0.70 -75.85 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.29 Total: 16.89 kcal Atomic # 6 Polarization: -70.92 SS G_CDS: 2.21 Total: -68.72 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -0.60 Total: -81.10 kcal Atomic # 8 Polarization: -70.02 SS G_CDS: -4.33 Total: -74.35 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.78 kcal Atomic # 16 Polarization: 78.96 SS G_CDS: -0.31 Total: 78.65 kcal Total: -75.15 -0.70 -75.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.678 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds