Wall clock time and date at job start Mon Mar 30 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86806 * 119.99692 * 2 1 4 4 H 1.48499 * 109.47144 * 275.24060 * 3 2 1 5 5 H 1.48499 * 109.47234 * 35.24461 * 3 2 1 6 6 H 1.48500 * 109.46815 * 155.24413 * 3 2 1 7 7 C 1.40220 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99887 * 343.96343 * 7 2 1 9 9 C 1.41113 * 120.00139 * 163.96872 * 7 2 1 10 10 C 1.40886 * 120.09671 * 332.08964 * 9 7 2 11 11 C 1.36326 * 119.88838 * 180.23117 * 10 9 7 12 12 C 1.40016 * 120.10379 * 359.50781 * 11 10 9 13 13 C 1.47639 * 119.89545 * 180.25313 * 12 11 10 14 14 O 1.21591 * 119.99980 * 352.90870 * 13 12 11 15 15 N 1.34773 * 120.00239 * 172.90735 * 13 12 11 16 16 C 1.47916 * 127.10369 * 4.22932 * 15 13 12 17 17 C 1.55930 * 105.07022 * 181.14765 * 16 15 13 18 18 H 1.08999 * 116.43829 * 160.00772 * 17 16 15 19 19 C 1.59094 * 98.70399 * 34.72109 * 17 16 15 20 20 C 1.49380 * 127.10400 * 184.54593 * 15 13 12 21 21 H 1.08997 * 116.40350 * 15.30390 * 20 15 13 22 22 C 1.56105 * 103.75963 * 245.87484 * 20 15 13 23 23 O 1.44117 * 105.39456 * 288.48065 * 22 20 15 24 24 C 1.40009 * 120.21108 * 0.49850 * 12 11 10 25 25 C 1.36323 * 120.10623 * 359.74954 * 24 12 11 26 26 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.05886 * 359.96109 * 10 9 7 28 28 H 1.08000 * 119.94762 * 179.75309 * 11 10 9 29 29 H 1.08999 * 110.32878 * 301.49065 * 16 15 13 30 30 H 1.09001 * 110.32991 * 63.71352 * 16 15 13 31 31 H 1.09006 * 112.16809 * 190.41373 * 19 17 16 32 32 H 1.08997 * 113.43608 * 62.14849 * 19 17 16 33 33 H 1.08995 * 110.26508 * 47.45974 * 22 20 15 34 34 H 1.08997 * 110.25797 * 169.41387 * 22 20 15 35 35 H 1.07996 * 119.94738 * 179.78083 * 24 12 11 36 36 H 1.08000 * 120.05240 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3772 2.1105 -1.3942 5 1 1.4977 2.6182 0.8079 6 1 3.5890 1.4108 0.5863 7 6 2.0076 -1.2143 0.0005 8 1 1.4991 -2.1314 0.2593 9 6 3.3776 -1.2383 -0.3369 10 6 3.9089 -0.2627 -1.2034 11 6 5.2320 -0.2926 -1.5304 12 6 6.0646 -1.2846 -0.9983 13 6 7.4980 -1.3094 -1.3511 14 8 7.9285 -0.5522 -2.1995 15 7 8.3295 -2.1711 -0.7326 16 6 7.9639 -3.2128 0.2518 17 6 9.3134 -3.8835 0.6524 18 1 9.3214 -4.4340 1.5931 19 6 10.2516 -2.6008 0.5767 20 6 9.8113 -2.2672 -0.8949 21 1 10.3023 -1.4205 -1.3745 22 6 10.0223 -3.6639 -1.5594 23 8 9.7335 -4.6265 -0.5266 24 6 5.5411 -2.2563 -0.1369 25 6 4.2183 -2.2375 0.1918 26 1 -0.4850 0.8400 -0.0004 27 1 3.2682 0.5050 -1.6115 28 1 5.6395 0.4524 -2.1977 29 1 7.4695 -2.7633 1.1129 30 1 7.3180 -3.9598 -0.2095 31 1 11.3082 -2.8593 0.6468 32 1 9.9734 -1.8180 1.2823 33 1 9.3360 -3.7911 -2.3966 34 1 11.0531 -3.7690 -1.8977 35 1 6.1865 -3.0216 0.2683 36 1 3.8153 -2.9877 0.8561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600777083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:35 Heat of formation + Delta-G solvation = -11.919416 kcal Electronic energy + Delta-G solvation = -20797.239282 eV Core-core repulsion = 17633.727033 eV Total energy + Delta-G solvation = -3163.512249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10140 -38.61987 -37.15548 -34.61886 -33.86037 -31.39404 -30.21670 -30.03178 -29.48710 -26.15102 -25.55469 -22.38016 -22.09383 -21.20007 -20.52603 -19.12082 -17.85449 -17.17853 -16.67789 -15.97821 -15.61450 -15.22580 -14.73196 -14.21390 -14.02377 -13.68122 -13.19373 -12.95720 -12.81833 -12.69433 -12.48451 -12.18597 -11.94602 -11.84812 -11.72965 -11.53997 -11.44384 -10.93183 -10.85505 -10.35140 -10.20430 -9.80429 -9.59090 -9.34534 -9.01335 -8.42031 -7.93049 -7.79017 -7.23871 -4.75689 1.98579 2.65621 2.96892 3.09273 3.13015 3.18156 3.51743 3.62908 3.81027 4.13935 4.32029 4.44323 4.60505 4.67982 5.11107 5.26131 5.38268 5.40680 5.48718 5.55563 5.58717 5.62706 5.77958 5.81457 5.90575 6.03878 6.32545 6.42185 6.57259 6.64442 6.68720 6.93436 7.24947 7.37493 7.48746 7.67266 7.88468 7.95105 8.08531 8.42477 8.52776 8.80990 9.75490 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.004721 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.975242 B = 5930.096989 C = 6317.868269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.081 3.919 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.420 4.420 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.253 4.253 11 C -0.008 4.008 12 C -0.284 4.284 13 C 0.592 3.408 14 O -0.569 6.569 15 N -0.628 5.628 16 C 0.075 3.925 17 C 0.058 3.942 18 H 0.149 0.851 19 C -0.169 4.169 20 C 0.100 3.900 21 H 0.130 0.870 22 C 0.038 3.962 23 O -0.375 6.375 24 C -0.075 4.075 25 C -0.220 4.220 26 H 0.292 0.708 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.302 -4.367 3.391 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.163 1.163 7 C -0.447 4.447 8 H 0.114 0.886 9 C 0.102 3.898 10 C -0.272 4.272 11 C -0.027 4.027 12 C -0.288 4.288 13 C 0.389 3.611 14 O -0.450 6.450 15 N -0.364 5.364 16 C -0.048 4.048 17 C 0.000 4.000 18 H 0.166 0.834 19 C -0.207 4.207 20 C -0.003 4.003 21 H 0.148 0.852 22 C -0.040 4.040 23 O -0.294 6.294 24 C -0.093 4.093 25 C -0.239 4.239 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.141 -4.045 2.867 14.985 hybrid contribution -0.042 0.931 -0.088 0.936 sum 14.099 -3.114 2.779 14.704 Atomic orbital electron populations 1.69588 1.08372 1.31138 1.31692 1.26390 0.94865 1.02414 0.90493 0.86198 0.81310 0.78822 0.79197 1.19289 1.21679 1.16266 1.19796 0.92509 0.96014 1.36366 0.88584 1.17895 0.92958 0.90686 0.88281 1.20679 0.95379 1.04622 1.06563 1.20382 0.92728 0.94905 0.94701 1.18790 0.91219 1.05377 1.13433 1.18311 0.85964 0.77539 0.79264 1.90659 1.78220 1.42403 1.33758 1.49120 1.06408 1.36000 1.44892 1.23451 0.96947 0.90816 0.93597 1.25437 0.92885 0.91253 0.90403 0.83414 1.24870 1.00429 0.98564 0.96848 1.24220 0.82495 0.97757 0.95855 0.85192 1.23961 1.00941 0.87776 0.91317 1.89044 1.87592 1.30566 1.22195 1.21624 0.96122 0.96622 0.94976 1.20696 0.93153 1.03656 1.06422 0.89750 0.87950 0.87747 0.89204 0.89766 0.89064 0.88750 0.90626 0.90470 0.85668 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.65 13.92 55.56 0.77 -18.88 16 2 C 0.08 2.01 5.44 -17.31 -0.09 1.91 16 3 Si 0.92 20.09 24.40 -169.99 -4.15 15.94 16 4 H -0.27 -5.74 6.71 56.52 0.38 -5.36 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.24 -5.43 6.66 56.52 0.38 -5.05 16 7 C -0.42 -10.72 9.59 -37.75 -0.36 -11.08 16 8 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16 9 C 0.11 2.58 5.18 -106.80 -0.55 2.02 16 10 C -0.25 -6.10 6.97 -39.27 -0.27 -6.38 16 11 C -0.01 -0.18 9.52 -39.60 -0.38 -0.56 16 12 C -0.28 -6.22 5.89 -104.73 -0.62 -6.83 16 13 C 0.59 12.20 7.85 -12.42 -0.10 12.11 16 14 O -0.57 -13.19 16.73 5.29 0.09 -13.10 16 15 N -0.63 -10.12 2.94 -158.75 -0.47 -10.58 16 16 C 0.07 0.98 4.27 -1.70 -0.01 0.97 16 17 C 0.06 0.59 5.98 -21.77 -0.13 0.46 16 18 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.17 -1.64 7.00 -21.07 -0.15 -1.78 16 20 C 0.10 1.28 5.26 -62.40 -0.33 0.95 16 21 H 0.13 1.65 8.09 -51.93 -0.42 1.23 16 22 C 0.04 0.46 7.16 38.82 0.28 0.73 16 23 O -0.37 -4.72 11.28 -35.23 -0.40 -5.12 16 24 C -0.08 -1.52 8.67 -39.61 -0.34 -1.86 16 25 C -0.22 -4.83 9.73 -39.27 -0.38 -5.21 16 26 H 0.29 6.56 8.29 -40.82 -0.34 6.22 16 27 H 0.10 2.44 4.30 -52.49 -0.23 2.21 16 28 H 0.10 2.36 7.65 -52.49 -0.40 1.96 16 29 H 0.09 1.12 6.75 -51.93 -0.35 0.77 16 30 H 0.08 1.16 6.98 -51.93 -0.36 0.80 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 2.06 2.82 -53.78 -0.15 1.91 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -29.50 289.97 -7.27 -36.77 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.05 Total: 5.16 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.44 Total: -14.55 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.31 Total: -29.46 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.31 Total: -18.22 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.15 Total: 15.94 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.50 -7.27 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600777083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.849 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds