Wall clock time and date at job start Mon Mar 30 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86806 * 119.99692 * 2 1 4 4 H 1.48499 * 109.47144 * 275.24060 * 3 2 1 5 5 H 1.48499 * 109.47234 * 35.24461 * 3 2 1 6 6 H 1.48500 * 109.46815 * 155.24413 * 3 2 1 7 7 C 1.40220 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99887 * 343.96343 * 7 2 1 9 9 C 1.41113 * 120.00139 * 163.96872 * 7 2 1 10 10 C 1.40886 * 120.09671 * 332.08964 * 9 7 2 11 11 C 1.36326 * 119.88838 * 180.23117 * 10 9 7 12 12 C 1.40016 * 120.10379 * 359.50781 * 11 10 9 13 13 C 1.47639 * 119.89545 * 180.25313 * 12 11 10 14 14 O 1.21591 * 119.99980 * 352.90870 * 13 12 11 15 15 N 1.34773 * 120.00239 * 172.90735 * 13 12 11 16 16 C 1.47916 * 127.10369 * 4.22932 * 15 13 12 17 17 C 1.55930 * 105.07022 * 181.14765 * 16 15 13 18 18 H 1.08999 * 116.43829 * 160.00772 * 17 16 15 19 19 C 1.59094 * 98.70399 * 34.72109 * 17 16 15 20 20 C 1.49380 * 127.10400 * 184.54593 * 15 13 12 21 21 H 1.08997 * 116.40350 * 15.30390 * 20 15 13 22 22 C 1.56105 * 103.75963 * 245.87484 * 20 15 13 23 23 O 1.44117 * 105.39456 * 288.48065 * 22 20 15 24 24 C 1.40009 * 120.21108 * 0.49850 * 12 11 10 25 25 C 1.36323 * 120.10623 * 359.74954 * 24 12 11 26 26 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.05886 * 359.96109 * 10 9 7 28 28 H 1.08000 * 119.94762 * 179.75309 * 11 10 9 29 29 H 1.08999 * 110.32878 * 301.49065 * 16 15 13 30 30 H 1.09001 * 110.32991 * 63.71352 * 16 15 13 31 31 H 1.09006 * 112.16809 * 190.41373 * 19 17 16 32 32 H 1.08997 * 113.43608 * 62.14849 * 19 17 16 33 33 H 1.08995 * 110.26508 * 47.45974 * 22 20 15 34 34 H 1.08997 * 110.25797 * 169.41387 * 22 20 15 35 35 H 1.07996 * 119.94738 * 179.78083 * 24 12 11 36 36 H 1.08000 * 120.05240 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3772 2.1105 -1.3942 5 1 1.4977 2.6182 0.8079 6 1 3.5890 1.4108 0.5863 7 6 2.0076 -1.2143 0.0005 8 1 1.4991 -2.1314 0.2593 9 6 3.3776 -1.2383 -0.3369 10 6 3.9089 -0.2627 -1.2034 11 6 5.2320 -0.2926 -1.5304 12 6 6.0646 -1.2846 -0.9983 13 6 7.4980 -1.3094 -1.3511 14 8 7.9285 -0.5522 -2.1995 15 7 8.3295 -2.1711 -0.7326 16 6 7.9639 -3.2128 0.2518 17 6 9.3134 -3.8835 0.6524 18 1 9.3214 -4.4340 1.5931 19 6 10.2516 -2.6008 0.5767 20 6 9.8113 -2.2672 -0.8949 21 1 10.3023 -1.4205 -1.3745 22 6 10.0223 -3.6639 -1.5594 23 8 9.7335 -4.6265 -0.5266 24 6 5.5411 -2.2563 -0.1369 25 6 4.2183 -2.2375 0.1918 26 1 -0.4850 0.8400 -0.0004 27 1 3.2682 0.5050 -1.6115 28 1 5.6395 0.4524 -2.1977 29 1 7.4695 -2.7633 1.1129 30 1 7.3180 -3.9598 -0.2095 31 1 11.3082 -2.8593 0.6468 32 1 9.9734 -1.8180 1.2823 33 1 9.3360 -3.7911 -2.3966 34 1 11.0531 -3.7690 -1.8977 35 1 6.1865 -3.0216 0.2683 36 1 3.8153 -2.9877 0.8561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600777083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:34 Heat of formation + Delta-G solvation = -31.184890 kcal Electronic energy + Delta-G solvation = -20798.074696 eV Core-core repulsion = 17633.727033 eV Total energy + Delta-G solvation = -3164.347663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19561 -40.19722 -38.85488 -35.94717 -35.56333 -32.92857 -31.92800 -31.11766 -30.79968 -27.71250 -26.81745 -23.87324 -23.57519 -22.30790 -22.04414 -20.45446 -19.60402 -18.58567 -17.86397 -17.46070 -16.88718 -16.57233 -16.18500 -15.69453 -15.50485 -15.33857 -14.76621 -14.46245 -14.36033 -14.07285 -13.83587 -13.64787 -13.39130 -12.88651 -12.84789 -12.75375 -12.62679 -12.48885 -12.38016 -11.98872 -11.91256 -11.56847 -11.09897 -10.95811 -10.34766 -9.82680 -9.67762 -9.53089 -9.08779 -6.66566 0.21904 0.85845 1.20736 1.32000 1.42329 1.87461 1.89267 2.03935 2.60252 2.74306 3.26284 3.37427 3.46191 3.66518 3.81319 3.89992 4.16389 4.25188 4.31558 4.40084 4.48246 4.58554 4.63660 4.69002 4.84622 4.87170 4.88144 4.92525 5.00542 5.12043 5.22461 5.43821 5.61998 5.68656 5.71516 5.81469 6.05516 6.21780 6.48522 6.56256 6.67400 7.22643 7.96544 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.004721 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.975242 B = 5930.096989 C = 6317.868269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.054 3.946 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.454 4.454 8 H 0.074 0.926 9 C 0.092 3.908 10 C -0.264 4.264 11 C -0.024 4.024 12 C -0.284 4.284 13 C 0.586 3.414 14 O -0.603 6.603 15 N -0.626 5.626 16 C 0.058 3.942 17 C 0.071 3.929 18 H 0.189 0.811 19 C -0.152 4.152 20 C 0.085 3.915 21 H 0.127 0.873 22 C 0.042 3.958 23 O -0.387 6.387 24 C -0.065 4.065 25 C -0.227 4.227 26 H 0.301 0.699 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.168 0.832 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 -5.323 4.785 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.482 4.482 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.283 4.283 11 C -0.043 4.043 12 C -0.288 4.288 13 C 0.382 3.618 14 O -0.487 6.487 15 N -0.360 5.360 16 C -0.064 4.064 17 C 0.014 3.986 18 H 0.206 0.794 19 C -0.190 4.190 20 C -0.017 4.017 21 H 0.145 0.855 22 C -0.036 4.036 23 O -0.307 6.307 24 C -0.082 4.082 25 C -0.246 4.246 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.184 0.816 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.120 -5.037 4.288 18.353 hybrid contribution -0.719 1.094 -0.556 1.422 sum 16.400 -3.943 3.732 17.276 Atomic orbital electron populations 1.69589 1.09097 1.32316 1.33293 1.26884 0.95349 1.04217 0.90056 0.85522 0.79734 0.76673 0.79360 1.18992 1.19720 1.17740 1.19762 0.93375 0.95830 1.39220 0.90759 1.18094 0.92957 0.91614 0.88478 1.20739 0.95781 1.04897 1.06932 1.20539 0.92788 0.95779 0.95227 1.19212 0.92359 1.04746 1.12485 1.18106 0.85933 0.78261 0.79472 1.90636 1.78698 1.44090 1.35313 1.49118 1.07863 1.34915 1.44055 1.23719 0.99424 0.90099 0.93115 1.25734 0.90436 0.91496 0.90900 0.79379 1.24873 1.01918 0.98165 0.94010 1.24570 0.80193 0.98196 0.98765 0.85535 1.23914 1.01925 0.87090 0.90668 1.89049 1.87562 1.31115 1.22939 1.22066 0.95879 0.96656 0.93624 1.20988 0.93712 1.03403 1.06476 0.88744 0.88248 0.87712 0.88021 0.90268 0.86245 0.88223 0.93047 0.87696 0.81561 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.02 13.92 21.87 0.30 -41.71 16 2 C 0.05 2.76 5.44 85.35 0.46 3.22 16 3 Si 0.96 41.80 24.40 68.60 1.67 43.48 16 4 H -0.26 -11.21 6.71 99.48 0.67 -10.54 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -11.46 6.66 99.48 0.66 -10.80 16 7 C -0.45 -23.98 9.59 23.46 0.22 -23.75 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 9 C 0.09 4.55 5.18 -21.28 -0.11 4.44 16 10 C -0.26 -12.92 6.97 22.47 0.16 -12.76 16 11 C -0.02 -1.13 9.52 22.25 0.21 -0.92 16 12 C -0.28 -12.18 5.89 -19.93 -0.12 -12.30 16 13 C 0.59 23.58 7.85 86.73 0.68 24.27 16 14 O -0.60 -27.87 16.73 -4.00 -0.07 -27.93 16 15 N -0.63 -18.70 2.94 -774.44 -2.28 -20.98 16 16 C 0.06 1.31 4.27 87.12 0.37 1.68 16 17 C 0.07 1.10 5.98 33.81 0.20 1.30 16 18 H 0.19 1.46 8.14 -2.39 -0.02 1.44 16 19 C -0.15 -2.21 7.00 34.26 0.24 -1.97 16 20 C 0.09 1.93 5.26 46.98 0.25 2.17 16 21 H 0.13 2.96 8.09 -2.39 -0.02 2.94 16 22 C 0.04 0.88 7.16 73.06 0.52 1.41 16 23 O -0.39 -8.19 11.28 -148.98 -1.68 -9.87 16 24 C -0.06 -2.49 8.67 22.25 0.19 -2.29 16 25 C -0.23 -9.77 9.73 22.47 0.22 -9.56 16 26 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 27 H 0.10 4.83 4.30 -2.91 -0.01 4.81 16 28 H 0.10 4.81 7.65 -2.91 -0.02 4.79 16 29 H 0.10 2.10 6.75 -2.39 -0.02 2.09 16 30 H 0.08 1.91 6.98 -2.39 -0.02 1.89 16 31 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.17 4.94 2.82 -4.13 -0.01 4.93 16 36 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -65.78 289.97 2.48 -63.29 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.03 Total: 18.79 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.51 Total: -25.07 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -1.98 Total: -62.69 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.75 Total: -37.81 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.67 Total: 43.48 kcal Total: -65.78 2.48 -63.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600777083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.108 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds