Wall clock time and date at job start Mon Mar 30 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42900 * 109.49667 * 65.00041 * 3 2 1 5 5 C 1.53040 * 109.50280 * 185.06151 * 3 2 1 6 6 C 1.53034 * 109.54125 * 181.31322 * 5 3 2 7 7 C 1.53190 * 109.31980 * 298.64182 * 6 5 3 8 8 N 1.46928 * 108.77583 * 54.62799 * 7 6 5 9 9 C 1.34770 * 120.62886 * 126.43522 * 8 7 6 10 10 O 1.21287 * 120.00032 * 180.02562 * 9 8 7 11 11 C 1.50704 * 120.00153 * 0.02562 * 9 8 7 12 12 S 1.80998 * 109.47185 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99930 * 179.97438 * 12 11 9 14 14 H 1.07993 * 119.99776 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99736 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00002 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99790 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47244 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47385 * 119.99498 * 17 15 13 20 20 H 1.48493 * 109.47311 * 239.99447 * 17 15 13 21 21 C 1.46930 * 118.76470 * 306.42094 * 8 7 6 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96700 * 114.00414 * 299.99785 * 4 3 2 28 28 H 1.08997 * 109.46430 * 301.34303 * 5 3 2 29 29 H 1.09004 * 109.45459 * 61.31281 * 5 3 2 30 30 H 1.09009 * 109.49825 * 58.59418 * 6 5 3 31 31 H 1.09005 * 109.50107 * 178.65195 * 6 5 3 32 32 H 1.09000 * 109.59128 * 174.41935 * 7 6 5 33 33 H 1.09005 * 109.58052 * 294.84633 * 7 6 5 34 34 H 1.09003 * 109.46508 * 299.99527 * 11 9 8 35 35 H 1.08996 * 109.47550 * 59.99616 * 11 9 8 36 36 H 0.97005 * 119.99657 * 180.02562 * 16 15 13 37 37 H 1.09006 * 109.56146 * 293.77799 * 21 8 7 38 38 H 1.09008 * 109.61446 * 173.35585 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6623 2.0818 1.2209 5 6 3.5651 1.4450 -0.1273 6 6 4.0790 2.8861 -0.0945 7 6 3.4936 3.6601 -1.2798 8 7 2.0296 3.5406 -1.2459 9 6 1.2502 4.6397 -1.2716 10 8 0.0428 4.5278 -1.2427 11 6 1.8788 6.0079 -1.3363 12 16 0.5799 7.2682 -1.3567 13 6 1.5683 8.7250 -1.4314 14 1 2.6452 8.6464 -1.4502 15 6 0.9627 9.9735 -1.4651 16 7 -0.3498 10.0692 -1.4418 17 14 2.0106 11.5179 -1.5436 18 1 3.4470 11.1414 -1.5585 19 1 1.6842 12.2754 -2.7786 20 1 1.7337 12.3649 -0.3558 21 6 1.4309 2.2002 -1.1838 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 0.7071 2.1173 1.3672 28 1 3.9997 0.8855 0.7011 29 1 3.8516 0.9790 -1.0701 30 1 3.7718 3.3609 0.8375 31 1 5.1671 2.8860 -0.1611 32 1 3.7763 4.7102 -1.2060 33 1 3.8729 3.2419 -2.2122 34 1 2.5153 6.1568 -0.4640 35 1 2.4791 6.0895 -2.2423 36 1 -0.7730 10.9418 -1.4657 37 1 1.6414 1.6632 -2.1088 38 1 0.3530 2.2869 -1.0465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601820358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:09 Heat of formation + Delta-G solvation = -122.452086 kcal Electronic energy + Delta-G solvation = -19564.152965 eV Core-core repulsion = 16531.291611 eV Total energy + Delta-G solvation = -3032.861354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45823 -39.45642 -36.73937 -34.59598 -34.00348 -33.30015 -31.48024 -29.56065 -27.71293 -26.27588 -25.23678 -22.49655 -21.33205 -20.49937 -19.52678 -18.24040 -17.82136 -16.90052 -16.80749 -16.63359 -16.00896 -15.83045 -15.47336 -14.97813 -14.76113 -14.57349 -14.30480 -14.07650 -13.64476 -13.47928 -13.32290 -13.16500 -12.92444 -12.88847 -12.61109 -12.43543 -12.04593 -11.93364 -11.86783 -11.69701 -11.29391 -11.16474 -11.07482 -10.73682 -10.27560 -9.56820 -8.68349 -8.35519 -6.14031 1.24917 1.41211 1.45208 1.56237 1.58192 2.10416 2.26641 2.98732 3.24243 3.30790 3.55129 3.73440 3.83863 3.88274 4.06792 4.16424 4.23312 4.30852 4.41696 4.43977 4.50235 4.62754 4.67796 4.79616 4.87750 4.91262 5.03710 5.08308 5.16975 5.22154 5.33743 5.40982 5.45488 5.57963 6.19105 6.28566 6.73247 7.05686 7.14056 8.74125 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.004187 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.954442 B = 6686.180633 C = 7164.598053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.118 3.882 4 O -0.570 6.570 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.097 3.903 8 N -0.600 5.600 9 C 0.533 3.467 10 O -0.568 6.568 11 C -0.122 4.122 12 S -0.151 6.151 13 C -0.546 4.546 14 H 0.082 0.918 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 1.000 3.000 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.274 1.274 21 C 0.082 3.918 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.378 0.622 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -21.051 1.212 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C 0.077 3.923 4 O -0.377 6.377 5 C -0.141 4.141 6 C -0.166 4.166 7 C -0.025 4.025 8 N -0.333 5.333 9 C 0.321 3.679 10 O -0.447 6.447 11 C -0.273 4.273 12 S 0.077 5.923 13 C -0.694 4.694 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.180 1.180 19 H -0.198 1.198 20 H -0.199 1.199 21 C -0.040 4.040 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.226 0.774 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.948 -21.067 1.305 23.334 hybrid contribution 0.662 1.230 -0.035 1.397 sum 10.610 -19.838 1.270 22.532 Atomic orbital electron populations 1.21892 0.95759 1.02787 1.01661 1.22100 0.96313 0.94928 1.04204 1.21755 0.96281 0.91356 0.82933 1.86513 1.28918 1.81724 1.40539 1.21583 0.91341 0.97086 1.04040 1.21818 1.01522 0.95714 0.97547 1.22084 0.77565 1.02491 1.00339 1.47964 1.07688 1.05006 1.72614 1.20076 0.86567 0.86066 0.75208 1.90652 1.15960 1.86908 1.51197 1.23350 1.03143 0.94894 1.05958 1.85541 1.11566 0.98375 1.96842 1.23226 0.95039 0.92348 1.58794 0.90022 1.26133 0.96651 1.02605 0.93666 1.70192 1.10586 1.26006 1.47996 0.84892 0.78419 0.76414 0.78135 1.18016 1.19781 1.19903 1.22525 0.99147 0.82224 1.00128 0.92965 0.93103 0.90978 0.90317 0.89019 0.77374 0.90254 0.88094 0.93119 0.88040 0.89834 0.88612 0.88091 0.87563 0.91960 0.88883 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.22 71.98 0.66 -1.76 16 2 C -0.14 -1.84 5.23 30.59 0.16 -1.68 16 3 C 0.12 2.19 0.76 -10.72 -0.01 2.18 16 4 O -0.57 -13.89 12.17 -148.98 -1.81 -15.70 16 5 C -0.10 -1.52 4.92 30.62 0.15 -1.37 16 6 C -0.13 -2.24 5.94 30.67 0.18 -2.06 16 7 C 0.10 2.01 6.34 86.36 0.55 2.55 16 8 N -0.60 -17.03 2.91 -818.87 -2.39 -19.42 16 9 C 0.53 21.15 7.72 87.66 0.68 21.83 16 10 O -0.57 -27.30 15.27 -3.05 -0.05 -27.35 16 11 C -0.12 -5.16 4.50 71.24 0.32 -4.84 16 12 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 13 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 14 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 15 C 0.01 0.82 5.49 84.86 0.47 1.28 16 16 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 17 Si 1.00 44.03 29.55 68.60 2.03 46.05 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 C 0.08 1.91 4.67 86.36 0.40 2.32 16 22 H 0.05 0.88 6.48 -2.39 -0.02 0.86 16 23 H 0.05 0.81 6.89 -2.39 -0.02 0.79 16 24 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.38 8.52 7.53 -74.06 -0.56 7.96 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 1.19 7.61 -2.38 -0.02 1.18 16 31 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.84 5.93 -2.39 -0.01 1.83 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.10 3.98 7.69 -2.39 -0.02 3.96 16 35 H 0.11 4.04 7.94 -2.40 -0.02 4.03 16 36 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.08 2.15 5.57 -2.38 -0.01 2.13 16 Total: -1.00 -77.41 316.21 1.61 -75.80 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.50 Total: 19.38 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.21 Total: -12.69 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -2.10 Total: -75.73 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.86 Total: -43.05 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.41 1.61 -75.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.654 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds