Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47416 * 2 1 4 4 O 1.42901 * 109.52449 * 300.08096 * 3 2 1 5 5 C 1.53039 * 109.50100 * 179.97438 * 3 2 1 6 6 C 1.53046 * 109.52798 * 178.68859 * 5 3 2 7 7 C 1.53159 * 109.32667 * 61.37318 * 6 5 3 8 8 N 1.46928 * 108.76987 * 305.35456 * 7 6 5 9 9 C 1.34771 * 120.63178 * 233.63011 * 8 7 6 10 10 O 1.21284 * 119.99847 * 179.97438 * 9 8 7 11 11 C 1.50699 * 120.00350 * 359.97438 * 9 8 7 12 12 S 1.80997 * 109.47603 * 179.97438 * 11 9 8 13 13 C 1.76196 * 100.00114 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.38799 * 119.99904 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47079 * 59.99949 * 17 15 13 19 19 H 1.48494 * 109.47039 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46816 * 300.00078 * 17 15 13 21 21 C 1.46931 * 118.73792 * 53.61250 * 8 7 6 22 22 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47380 * 300.00107 * 1 2 3 24 24 H 1.09001 * 109.47178 * 60.00054 * 1 2 3 25 25 H 1.08999 * 109.47633 * 239.99447 * 2 1 3 26 26 H 1.09000 * 109.46915 * 119.99464 * 2 1 3 27 27 H 0.96704 * 114.00259 * 59.91262 * 4 3 2 28 28 H 1.09002 * 109.46050 * 298.70445 * 5 3 2 29 29 H 1.09004 * 109.46034 * 58.67660 * 5 3 2 30 30 H 1.08996 * 109.49379 * 181.30938 * 6 5 3 31 31 H 1.08994 * 109.49581 * 301.40708 * 6 5 3 32 32 H 1.08999 * 109.58991 * 185.56748 * 7 6 5 33 33 H 1.09002 * 109.70860 * 65.20753 * 7 6 5 34 34 H 1.09005 * 109.47033 * 300.00164 * 11 9 8 35 35 H 1.09001 * 109.47321 * 59.99201 * 11 9 8 36 36 H 0.96997 * 120.00716 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58425 * 186.61021 * 21 8 7 38 38 H 1.08995 * 109.70793 * 66.24640 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5628 2.1178 -1.1654 5 6 3.5704 1.4432 0.0006 6 6 4.0813 2.8854 -0.0324 7 6 3.5973 3.6234 1.2194 8 7 2.1353 3.5032 1.3034 9 6 1.3619 4.6003 1.4245 10 8 0.1562 4.4878 1.4924 11 6 1.9952 5.9668 1.4756 12 16 0.7040 7.2246 1.6390 13 6 1.6969 8.6797 1.6744 14 1 2.7717 8.6019 1.6024 15 6 1.0977 9.9260 1.7938 16 7 -0.2122 10.0209 1.8810 17 14 2.1504 11.4688 1.8305 18 1 2.9314 11.5653 0.5712 19 1 1.2760 12.6615 1.9640 20 1 3.0807 11.4057 2.9863 21 6 1.5325 2.1643 1.2524 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.5987 2.1554 -1.2312 28 1 3.9334 0.9498 0.9023 29 1 3.9341 0.9089 -0.8771 30 1 5.1710 2.8849 -0.0554 31 1 3.6984 3.3867 -0.9212 32 1 3.8742 4.6756 1.1533 33 1 4.0518 3.1809 2.1058 34 1 2.6685 6.0235 2.3310 35 1 2.5578 6.1411 0.5584 36 1 -0.6309 10.8918 1.9648 37 1 0.4471 2.2537 1.2079 38 1 1.8166 1.5992 2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601820363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -97.640223 kcal Electronic energy + Delta-G solvation = -19559.771995 eV Core-core repulsion = 16527.986564 eV Total energy + Delta-G solvation = -3031.785431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33659 -38.21658 -35.63956 -33.11309 -32.41768 -32.30560 -30.18610 -28.48076 -25.60055 -25.06443 -24.40915 -21.64869 -20.36002 -19.20474 -17.66043 -16.89725 -16.69500 -15.72993 -15.40743 -14.79975 -14.78067 -14.66660 -14.21950 -13.88826 -13.63990 -13.30778 -13.06974 -12.76898 -12.51866 -12.48430 -12.11760 -11.94708 -11.55868 -11.25572 -11.14924 -11.10871 -11.02209 -11.01482 -10.74836 -10.44893 -10.10599 -9.78480 -9.30126 -9.03939 -8.39568 -8.20293 -6.47513 -6.19394 -3.89802 2.95407 3.10370 3.25003 3.27526 3.30710 3.62592 4.11001 4.22558 4.38717 4.54593 4.65117 4.88717 4.92516 4.98316 5.03004 5.15615 5.20575 5.32634 5.37118 5.53165 5.57623 5.60392 5.65887 5.68501 5.71583 5.79094 5.88886 5.92208 5.93941 6.06484 6.15748 6.26120 6.66392 7.57372 7.61046 7.63454 8.37047 8.60512 9.25695 10.88020 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035423 B = 0.004183 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.267902 B = 6692.186698 C = 7168.364339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.146 4.146 3 C 0.119 3.881 4 O -0.550 6.550 5 C -0.103 4.103 6 C -0.133 4.133 7 C 0.107 3.893 8 N -0.612 5.612 9 C 0.538 3.462 10 O -0.521 6.521 11 C -0.149 4.149 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.088 3.912 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.376 0.624 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 -19.723 -2.939 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.185 4.185 3 C 0.077 3.923 4 O -0.356 6.356 5 C -0.141 4.141 6 C -0.171 4.171 7 C -0.016 4.016 8 N -0.347 5.347 9 C 0.326 3.674 10 O -0.396 6.396 11 C -0.300 4.300 12 S 0.166 5.834 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.036 4.036 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.224 0.776 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.772 -19.681 -2.919 21.017 hybrid contribution 1.557 0.975 0.079 1.839 sum 8.328 -18.706 -2.840 20.672 Atomic orbital electron populations 1.21872 0.95365 1.02280 1.02449 1.22153 0.96756 0.96606 1.02939 1.21572 0.94781 0.90344 0.85590 1.86527 1.26859 1.79245 1.43006 1.21493 0.92508 0.97625 1.02429 1.21845 1.00314 0.95672 0.99253 1.21732 0.80037 1.02215 0.97636 1.47930 1.06721 1.05552 1.74514 1.20293 0.86899 0.85365 0.74831 1.90670 1.14169 1.86200 1.48588 1.23542 1.05600 0.96195 1.04659 1.85367 1.06901 0.95348 1.95819 1.22826 0.94859 0.92211 1.58476 0.91018 1.24979 0.95278 0.98696 0.94541 1.70003 1.08671 1.25204 1.46459 0.86235 0.79683 0.80859 0.78793 1.19923 1.20815 1.19947 1.22243 1.00499 0.83526 0.97323 0.92242 0.91948 0.92343 0.90971 0.90998 0.77566 0.90748 0.91144 0.90890 0.90268 0.89207 0.91714 0.89390 0.89242 0.92149 0.88500 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.26 37.15 0.34 -0.94 16 2 C -0.15 -1.17 5.21 -26.74 -0.14 -1.31 16 3 C 0.12 1.22 0.75 -90.50 -0.07 1.16 16 4 O -0.55 -6.84 12.13 -35.23 -0.43 -7.27 16 5 C -0.10 -0.95 4.92 -26.69 -0.13 -1.08 16 6 C -0.13 -1.36 5.94 -26.63 -0.16 -1.51 16 7 C 0.11 1.25 6.34 -3.73 -0.02 1.23 16 8 N -0.61 -9.05 2.91 -172.78 -0.50 -9.56 16 9 C 0.54 10.55 7.72 -10.99 -0.08 10.47 16 10 O -0.52 -12.03 15.27 5.55 0.08 -11.95 16 11 C -0.15 -3.13 4.50 36.01 0.16 -2.97 16 12 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 13 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 14 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 15 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 16 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 17 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.09 1.08 4.83 -3.70 -0.02 1.06 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 24 H 0.06 0.46 6.78 -51.93 -0.35 0.11 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.38 4.13 7.34 45.56 0.33 4.46 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.99 7.61 -51.93 -0.40 0.60 16 32 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.71 7.94 -51.91 -0.41 1.29 16 35 H 0.09 1.77 7.69 -51.92 -0.40 1.37 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.35 5.62 -51.93 -0.29 1.06 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 316.19 15.07 4.76 4.76 Total: -1.00 -34.37 316.19 -7.59 -41.97 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.09 Total: 2.05 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 0.08 Total: -6.98 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.23 Total: -35.19 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.34 Total: -19.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.37 -7.59 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.673 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds