Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47416 * 2 1 4 4 O 1.42901 * 109.52449 * 300.08096 * 3 2 1 5 5 C 1.53039 * 109.50100 * 179.97438 * 3 2 1 6 6 C 1.53046 * 109.52798 * 178.68859 * 5 3 2 7 7 C 1.53159 * 109.32667 * 61.37318 * 6 5 3 8 8 N 1.46928 * 108.76987 * 305.35456 * 7 6 5 9 9 C 1.34771 * 120.63178 * 233.63011 * 8 7 6 10 10 O 1.21284 * 119.99847 * 179.97438 * 9 8 7 11 11 C 1.50699 * 120.00350 * 359.97438 * 9 8 7 12 12 S 1.80997 * 109.47603 * 179.97438 * 11 9 8 13 13 C 1.76196 * 100.00114 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.38799 * 119.99904 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47079 * 59.99949 * 17 15 13 19 19 H 1.48494 * 109.47039 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46816 * 300.00078 * 17 15 13 21 21 C 1.46931 * 118.73792 * 53.61250 * 8 7 6 22 22 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47380 * 300.00107 * 1 2 3 24 24 H 1.09001 * 109.47178 * 60.00054 * 1 2 3 25 25 H 1.08999 * 109.47633 * 239.99447 * 2 1 3 26 26 H 1.09000 * 109.46915 * 119.99464 * 2 1 3 27 27 H 0.96704 * 114.00259 * 59.91262 * 4 3 2 28 28 H 1.09002 * 109.46050 * 298.70445 * 5 3 2 29 29 H 1.09004 * 109.46034 * 58.67660 * 5 3 2 30 30 H 1.08996 * 109.49379 * 181.30938 * 6 5 3 31 31 H 1.08994 * 109.49581 * 301.40708 * 6 5 3 32 32 H 1.08999 * 109.58991 * 185.56748 * 7 6 5 33 33 H 1.09002 * 109.70860 * 65.20753 * 7 6 5 34 34 H 1.09005 * 109.47033 * 300.00164 * 11 9 8 35 35 H 1.09001 * 109.47321 * 59.99201 * 11 9 8 36 36 H 0.96997 * 120.00716 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.58425 * 186.61021 * 21 8 7 38 38 H 1.08995 * 109.70793 * 66.24640 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5628 2.1178 -1.1654 5 6 3.5704 1.4432 0.0006 6 6 4.0813 2.8854 -0.0324 7 6 3.5973 3.6234 1.2194 8 7 2.1353 3.5032 1.3034 9 6 1.3619 4.6003 1.4245 10 8 0.1562 4.4878 1.4924 11 6 1.9952 5.9668 1.4756 12 16 0.7040 7.2246 1.6390 13 6 1.6969 8.6797 1.6744 14 1 2.7717 8.6019 1.6024 15 6 1.0977 9.9260 1.7938 16 7 -0.2122 10.0209 1.8810 17 14 2.1504 11.4688 1.8305 18 1 2.9314 11.5653 0.5712 19 1 1.2760 12.6615 1.9640 20 1 3.0807 11.4057 2.9863 21 6 1.5325 2.1643 1.2524 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.5987 2.1554 -1.2312 28 1 3.9334 0.9498 0.9023 29 1 3.9341 0.9089 -0.8771 30 1 5.1710 2.8849 -0.0554 31 1 3.6984 3.3867 -0.9212 32 1 3.8742 4.6756 1.1533 33 1 4.0518 3.1809 2.1058 34 1 2.6685 6.0235 2.3310 35 1 2.5578 6.1411 0.5584 36 1 -0.6309 10.8918 1.9648 37 1 0.4471 2.2537 1.2079 38 1 1.8166 1.5992 2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601820363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -122.351255 kcal Electronic energy + Delta-G solvation = -19560.843545 eV Core-core repulsion = 16527.986564 eV Total energy + Delta-G solvation = -3032.856982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45571 -39.45963 -36.75040 -34.59380 -33.96383 -33.28512 -31.49973 -29.59786 -27.70649 -26.26455 -25.22051 -22.51069 -21.32464 -20.49853 -19.52062 -18.23768 -17.82716 -16.89355 -16.81458 -16.64525 -15.99687 -15.82258 -15.50921 -14.97001 -14.77861 -14.56791 -14.29773 -14.06905 -13.64661 -13.47945 -13.27767 -13.16798 -12.89797 -12.86329 -12.63755 -12.44848 -12.03924 -11.94347 -11.89065 -11.72594 -11.28736 -11.13371 -11.08026 -10.73679 -10.28213 -9.56885 -8.68300 -8.34871 -6.13742 1.24744 1.43877 1.45072 1.54867 1.57625 2.10395 2.27256 2.99090 3.24381 3.30579 3.55139 3.73571 3.83827 3.88295 4.07192 4.16257 4.23303 4.31096 4.41536 4.43341 4.50219 4.62575 4.68474 4.79645 4.88035 4.91472 5.04554 5.08047 5.16413 5.22046 5.33718 5.40484 5.45671 5.57792 6.18833 6.28563 6.72921 7.05906 7.14020 8.74270 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035423 B = 0.004183 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.267902 B = 6692.186698 C = 7168.364339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.118 3.882 4 O -0.570 6.570 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.097 3.903 8 N -0.599 5.599 9 C 0.533 3.467 10 O -0.568 6.568 11 C -0.122 4.122 12 S -0.150 6.150 13 C -0.548 4.548 14 H 0.082 0.918 15 C 0.015 3.985 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.261 1.261 21 C 0.082 3.918 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.377 0.623 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.272 0.728 37 H 0.075 0.925 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.044 -20.978 -2.776 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.176 4.176 3 C 0.077 3.923 4 O -0.377 6.377 5 C -0.140 4.140 6 C -0.166 4.166 7 C -0.025 4.025 8 N -0.332 5.332 9 C 0.321 3.679 10 O -0.447 6.447 11 C -0.273 4.273 12 S 0.077 5.923 13 C -0.696 4.696 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.185 1.185 21 C -0.040 4.040 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.773 -20.987 -2.764 23.315 hybrid contribution 0.679 1.220 0.017 1.396 sum 10.452 -19.767 -2.747 22.529 Atomic orbital electron populations 1.21880 0.95766 1.02832 1.01638 1.22093 0.96346 0.94938 1.04176 1.21756 0.95819 0.91118 0.83640 1.86512 1.27196 1.79898 1.44103 1.21585 0.91168 0.97084 1.04196 1.21809 1.01932 0.95888 0.96949 1.22077 0.77845 1.02646 0.99911 1.47956 1.07953 1.05201 1.72139 1.20076 0.86547 0.86032 0.75262 1.90651 1.16016 1.86787 1.51271 1.23350 1.03169 0.94919 1.05912 1.85535 1.11909 0.98644 1.96183 1.23166 0.95245 0.92577 1.58631 0.90009 1.26129 0.96673 1.02566 0.93622 1.70172 1.10885 1.26226 1.47483 0.85003 0.77750 0.75719 0.79515 1.18679 1.20291 1.18539 1.22503 0.99390 0.82412 0.99723 0.90944 0.93083 0.92957 0.90258 0.89091 0.77377 0.88084 0.90257 0.88041 0.93110 0.89848 0.88607 0.87559 0.88086 0.91946 0.90691 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.26 71.98 0.67 -1.76 16 2 C -0.14 -1.84 5.21 30.59 0.16 -1.68 16 3 C 0.12 2.19 0.75 -10.71 -0.01 2.18 16 4 O -0.57 -13.92 12.13 -148.98 -1.81 -15.73 16 5 C -0.10 -1.52 4.92 30.62 0.15 -1.37 16 6 C -0.13 -2.24 5.94 30.66 0.18 -2.06 16 7 C 0.10 2.00 6.34 86.35 0.55 2.55 16 8 N -0.60 -17.03 2.91 -818.95 -2.39 -19.42 16 9 C 0.53 21.16 7.72 87.66 0.68 21.84 16 10 O -0.57 -27.33 15.27 -3.04 -0.05 -27.37 16 11 C -0.12 -5.16 4.50 71.24 0.32 -4.84 16 12 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 13 C -0.55 -31.92 9.50 67.95 0.65 -31.27 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.86 5.49 84.86 0.47 1.33 16 16 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 17 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 21 C 0.08 1.92 4.83 86.36 0.42 2.33 16 22 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 23 H 0.05 0.87 6.57 -2.39 -0.02 0.85 16 24 H 0.05 0.82 6.78 -2.39 -0.02 0.81 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.38 8.57 7.34 -74.05 -0.54 8.03 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.20 7.61 -2.39 -0.02 1.18 16 32 H 0.08 1.84 5.93 -2.39 -0.01 1.82 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 4.04 7.94 -2.39 -0.02 4.03 16 35 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.07 2.12 5.62 -2.39 -0.01 2.11 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.38 316.19 1.65 -75.73 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.51 Total: 19.64 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.22 Total: -12.74 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.10 Total: -75.77 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.85 Total: -43.10 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -77.38 1.65 -75.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds