Wall clock time and date at job start Mon Mar 30 2020 01:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48496 * 109.47147 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.47020 * 119.99967 * 3 2 1 6 6 H 1.48494 * 109.46943 * 239.99906 * 3 2 1 7 7 C 1.40276 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99895 * 160.94222 * 7 2 1 9 9 C 1.40893 * 119.99916 * 340.94647 * 7 2 1 10 10 C 1.40710 * 120.32564 * 325.84872 * 9 7 2 11 11 C 1.37601 * 119.87923 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.56733 * 0.02562 * 11 10 9 13 13 C 1.38215 * 120.67982 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09251 * 359.72196 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.27997 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46932 * 179.97438 * 18 17 15 20 20 O 1.20760 * 120.00169 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99990 * 180.02562 * 19 18 17 22 22 C 1.53000 * 117.49920 * 223.74686 * 21 19 18 23 23 C 1.53001 * 117.50168 * 155.08753 * 21 19 18 24 24 H 0.97005 * 119.99855 * 174.76358 * 1 2 3 25 25 H 1.07999 * 120.06103 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.71198 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.65686 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.95764 * 180.02562 * 13 12 11 29 29 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 30 30 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 31 31 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 32 32 H 1.09002 * 115.55093 * 9.41420 * 21 19 18 33 33 H 1.09002 * 117.49676 * 0.02562 * 22 21 19 34 34 H 1.09006 * 117.50196 * 145.01491 * 22 21 19 35 35 H 1.09005 * 117.49796 * 214.97509 * 23 21 19 36 36 H 1.08994 * 117.49803 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2752 2.7465 0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0939 1.6965 -1.2125 7 6 2.0077 -1.2148 0.0005 8 1 3.0433 -1.2404 -0.3048 9 6 1.3612 -2.4014 0.3994 10 6 0.3813 -2.3718 1.4088 11 6 -0.2439 -3.5363 1.7916 12 6 0.0837 -4.7440 1.1904 13 6 1.0427 -4.7999 0.1966 14 6 1.6883 -3.6376 -0.2167 15 6 2.7074 -3.6915 -1.2806 16 8 3.2294 -2.6663 -1.6751 17 7 3.0606 -4.8768 -1.8161 18 6 4.0737 -4.9303 -2.8730 19 6 4.2842 -6.3616 -3.2949 20 8 3.6534 -7.2458 -2.7670 21 6 5.2827 -6.6897 -4.3749 22 6 4.8624 -7.7029 -5.4415 23 6 5.8876 -8.0951 -4.3746 24 1 -0.4850 -0.8366 -0.0767 25 1 0.1210 -1.4370 1.8828 26 1 -0.9953 -3.5105 2.5668 27 1 -0.4160 -5.6491 1.5025 28 1 1.2881 -5.7457 -0.2634 29 1 2.6445 -5.6945 -1.5012 30 1 3.7376 -4.3446 -3.7285 31 1 5.0118 -4.5208 -2.4981 32 1 5.9240 -5.8659 -4.6883 33 1 3.8634 -8.1319 -5.3623 34 1 5.2273 -7.5459 -6.4566 35 1 6.9266 -8.1959 -4.6882 36 1 5.5636 -8.7823 -3.5931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632267256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:44 Heat of formation + Delta-G solvation = -33.104839 kcal Electronic energy + Delta-G solvation = -20047.251331 eV Core-core repulsion = 16882.820413 eV Total energy + Delta-G solvation = -3164.430918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21093 -38.83738 -36.99063 -36.32358 -34.19328 -33.54129 -30.35555 -29.44626 -28.27635 -25.28027 -23.90553 -22.75985 -22.06331 -20.89742 -19.82080 -19.29339 -18.15614 -17.12504 -16.15838 -15.77536 -15.41297 -14.81335 -14.72406 -14.35289 -14.07848 -13.84864 -13.67397 -13.37234 -12.80934 -12.60293 -12.32385 -12.11990 -11.87151 -11.70920 -11.13328 -10.98152 -10.91125 -10.82439 -10.74356 -10.36760 -10.16747 -9.84488 -9.60056 -9.08072 -8.57736 -8.49719 -7.78806 -7.60326 -7.14727 -4.46613 1.64820 2.23370 2.74906 3.20252 3.31165 3.40889 3.44166 3.54402 4.02581 4.05285 4.06900 4.44490 4.58995 4.64079 4.75134 5.04097 5.28121 5.43206 5.50842 5.53259 5.57078 5.66449 5.77459 5.91214 6.03855 6.18301 6.49189 6.72860 6.94838 7.01165 7.28049 7.32996 7.50574 7.60344 7.73407 7.88576 8.08783 8.20911 8.33624 8.73048 8.85620 9.29614 10.04188 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.004630 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.820813 B = 6045.425430 C = 7184.676414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.201 4.201 11 C -0.075 4.075 12 C -0.258 4.258 13 C -0.042 4.042 14 C -0.266 4.266 15 C 0.566 3.434 16 O -0.538 6.538 17 N -0.745 5.745 18 C 0.081 3.919 19 C 0.380 3.620 20 O -0.454 6.454 21 C -0.220 4.220 22 C -0.149 4.149 23 C -0.151 4.151 24 H 0.298 0.702 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.401 0.599 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -9.645 -7.150 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.894 3.106 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.494 4.494 8 H 0.123 0.877 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.094 4.094 12 C -0.278 4.278 13 C -0.061 4.061 14 C -0.271 4.271 15 C 0.360 3.640 16 O -0.417 6.417 17 N -0.403 5.403 18 C -0.044 4.044 19 C 0.256 3.744 20 O -0.327 6.327 21 C -0.239 4.239 22 C -0.186 4.186 23 C -0.188 4.188 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.238 0.762 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.876 -7.708 -7.108 13.114 hybrid contribution -0.058 -2.140 0.028 2.141 sum 7.819 -9.848 -7.080 14.431 Atomic orbital electron populations 1.70386 1.08255 1.34343 1.28687 1.27278 0.95695 1.04686 0.91402 0.83551 0.75529 0.73274 0.78226 1.19941 1.19956 1.19799 1.21186 1.01617 0.91915 1.34689 0.87671 1.17493 0.89720 0.91970 0.89070 1.21255 1.02955 0.97131 1.00701 1.20754 0.97595 0.93174 0.97834 1.20256 1.05720 0.96749 1.05048 1.20769 0.94660 0.95480 0.95208 1.19334 1.07863 0.95408 1.04527 1.18386 0.82122 0.81746 0.81726 1.90676 1.55289 1.32969 1.62727 1.45881 1.43381 1.10708 1.40374 1.21390 0.95008 0.94446 0.93578 1.24003 0.79412 0.90672 0.80279 1.90371 1.42295 1.50096 1.49965 1.22779 1.03730 0.95975 1.01447 1.22965 1.00871 1.00231 0.94517 1.22978 0.98923 0.94850 1.02082 0.88780 0.87466 0.88820 0.88824 0.88961 0.76228 0.88417 0.88462 0.85256 0.88025 0.87632 0.87747 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.31 12.57 55.56 0.70 -20.61 16 2 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 3 Si 1.07 22.44 29.98 -169.99 -5.10 17.34 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.47 -12.88 7.66 -37.81 -0.29 -13.17 16 8 H 0.11 3.01 5.91 -52.49 -0.31 2.70 16 9 C 0.12 3.28 5.18 -106.54 -0.55 2.73 16 10 C -0.20 -5.07 7.86 -38.88 -0.31 -5.38 16 11 C -0.07 -1.68 10.01 -39.60 -0.40 -2.08 16 12 C -0.26 -5.59 10.03 -39.37 -0.39 -5.98 16 13 C -0.04 -0.93 9.53 -39.22 -0.37 -1.31 16 14 C -0.27 -6.64 5.92 -104.37 -0.62 -7.26 16 15 C 0.57 13.33 7.73 -12.52 -0.10 13.24 16 16 O -0.54 -14.08 13.55 5.26 0.07 -14.01 16 17 N -0.75 -13.99 5.48 -62.56 -0.34 -14.34 16 18 C 0.08 1.19 6.09 -5.20 -0.03 1.16 16 19 C 0.38 4.84 6.99 -29.03 -0.20 4.64 16 20 O -0.45 -6.97 15.74 6.00 0.09 -6.88 16 21 C -0.22 -2.02 6.12 -91.77 -0.56 -2.59 16 22 C -0.15 -1.20 10.14 -26.69 -0.27 -1.47 16 23 C -0.15 -1.23 10.05 -26.69 -0.27 -1.50 16 24 H 0.30 8.21 6.54 -40.82 -0.27 7.95 16 25 H 0.11 2.74 6.93 -52.49 -0.36 2.37 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.77 6.41 -52.49 -0.34 1.43 16 29 H 0.40 7.19 5.48 -40.82 -0.22 6.97 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -31.02 311.12 -8.42 -39.45 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.09 Total: 12.59 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.45 Total: -18.23 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.36 Total: -34.95 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.10 Total: 17.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.02 -8.42 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632267256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.342 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds