Wall clock time and date at job start Mon Mar 30 2020 01:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48496 * 109.47147 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.47020 * 119.99967 * 3 2 1 6 6 H 1.48494 * 109.46943 * 239.99906 * 3 2 1 7 7 C 1.40276 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99895 * 160.94222 * 7 2 1 9 9 C 1.40893 * 119.99916 * 340.94647 * 7 2 1 10 10 C 1.40710 * 120.32564 * 325.84872 * 9 7 2 11 11 C 1.37601 * 119.87923 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.56733 * 0.02562 * 11 10 9 13 13 C 1.38215 * 120.67982 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09251 * 359.72196 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.27997 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46932 * 179.97438 * 18 17 15 20 20 O 1.20760 * 120.00169 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99990 * 180.02562 * 19 18 17 22 22 C 1.53000 * 117.49920 * 223.74686 * 21 19 18 23 23 C 1.53001 * 117.50168 * 155.08753 * 21 19 18 24 24 H 0.97005 * 119.99855 * 174.76358 * 1 2 3 25 25 H 1.07999 * 120.06103 * 359.97438 * 10 9 7 26 26 H 1.07994 * 119.71198 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.65686 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.95764 * 180.02562 * 13 12 11 29 29 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 30 30 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 31 31 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 32 32 H 1.09002 * 115.55093 * 9.41420 * 21 19 18 33 33 H 1.09002 * 117.49676 * 0.02562 * 22 21 19 34 34 H 1.09006 * 117.50196 * 145.01491 * 22 21 19 35 35 H 1.09005 * 117.49796 * 214.97509 * 23 21 19 36 36 H 1.08994 * 117.49803 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2752 2.7465 0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0939 1.6965 -1.2125 7 6 2.0077 -1.2148 0.0005 8 1 3.0433 -1.2404 -0.3048 9 6 1.3612 -2.4014 0.3994 10 6 0.3813 -2.3718 1.4088 11 6 -0.2439 -3.5363 1.7916 12 6 0.0837 -4.7440 1.1904 13 6 1.0427 -4.7999 0.1966 14 6 1.6883 -3.6376 -0.2167 15 6 2.7074 -3.6915 -1.2806 16 8 3.2294 -2.6663 -1.6751 17 7 3.0606 -4.8768 -1.8161 18 6 4.0737 -4.9303 -2.8730 19 6 4.2842 -6.3616 -3.2949 20 8 3.6534 -7.2458 -2.7670 21 6 5.2827 -6.6897 -4.3749 22 6 4.8624 -7.7029 -5.4415 23 6 5.8876 -8.0951 -4.3746 24 1 -0.4850 -0.8366 -0.0767 25 1 0.1210 -1.4370 1.8828 26 1 -0.9953 -3.5105 2.5668 27 1 -0.4160 -5.6491 1.5025 28 1 1.2881 -5.7457 -0.2634 29 1 2.6445 -5.6945 -1.5012 30 1 3.7376 -4.3446 -3.7285 31 1 5.0118 -4.5208 -2.4981 32 1 5.9240 -5.8659 -4.6883 33 1 3.8634 -8.1319 -5.3623 34 1 5.2273 -7.5459 -6.4566 35 1 6.9266 -8.1959 -4.6882 36 1 5.5636 -8.7823 -3.5931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632267256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:44 Heat of formation + Delta-G solvation = -51.843595 kcal Electronic energy + Delta-G solvation = -20048.063904 eV Core-core repulsion = 16882.820413 eV Total energy + Delta-G solvation = -3165.243492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39376 -40.50474 -38.78208 -37.16428 -36.01024 -35.23033 -32.12371 -31.31313 -29.67471 -27.13729 -25.15218 -23.70126 -23.36388 -22.74110 -21.36389 -20.51215 -19.93691 -18.57283 -17.34619 -17.18000 -16.70438 -16.56342 -16.12736 -15.87458 -15.54689 -15.46184 -15.23832 -14.82759 -14.43477 -13.96329 -13.89091 -13.57510 -13.46371 -12.92641 -12.71353 -12.52127 -12.46475 -12.03048 -11.95977 -11.62492 -11.52180 -11.50225 -10.97647 -10.85468 -10.42736 -10.15047 -9.65497 -9.52814 -9.12372 -6.48547 0.35397 0.65313 0.88055 1.48276 1.63229 1.78706 2.16005 2.18622 2.31907 2.72524 2.83750 2.86590 3.52872 3.73334 3.94564 4.00824 4.14850 4.19987 4.24345 4.34872 4.37711 4.47778 4.71064 4.75088 4.84911 4.91619 5.00856 5.10744 5.17857 5.39511 5.41799 5.62571 5.67718 5.85597 5.93442 6.16621 6.29612 6.30206 6.59320 6.80264 6.88064 7.49227 8.02912 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.004630 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.820813 B = 6045.425430 C = 7184.676414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C -0.002 4.002 3 Si 1.117 2.883 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.085 0.915 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.070 4.070 12 C -0.246 4.246 13 C -0.044 4.044 14 C -0.287 4.287 15 C 0.561 3.439 16 O -0.571 6.571 17 N -0.732 5.732 18 C 0.072 3.928 19 C 0.389 3.611 20 O -0.484 6.484 21 C -0.227 4.227 22 C -0.142 4.142 23 C -0.146 4.146 24 H 0.283 0.717 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.406 0.594 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -11.482 -7.794 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.218 4.218 3 Si 0.934 3.066 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.244 4.244 11 C -0.088 4.088 12 C -0.264 4.264 13 C -0.063 4.063 14 C -0.292 4.292 15 C 0.355 3.645 16 O -0.453 6.453 17 N -0.388 5.388 18 C -0.052 4.052 19 C 0.268 3.732 20 O -0.360 6.360 21 C -0.246 4.246 22 C -0.179 4.179 23 C -0.183 4.183 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.244 0.756 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.172 0.828 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.632 -9.604 -7.760 15.065 hybrid contribution -0.315 -1.866 0.228 1.906 sum 8.317 -11.470 -7.532 16.046 Atomic orbital electron populations 1.70499 1.08679 1.33136 1.31591 1.28536 0.95806 1.07435 0.89990 0.83005 0.74773 0.69877 0.78903 1.18920 1.18363 1.19355 1.21150 1.01150 0.93461 1.37865 0.89758 1.17881 0.90415 0.92788 0.89549 1.21240 1.04045 0.97859 1.01214 1.21158 0.97259 0.92475 0.97951 1.20784 1.04433 0.97808 1.03420 1.21120 0.94150 0.95797 0.95246 1.19763 1.08546 0.95919 1.05003 1.18355 0.81887 0.82561 0.81718 1.90653 1.56446 1.34454 1.63724 1.45682 1.43470 1.09265 1.40432 1.21712 0.94195 0.96703 0.92600 1.24151 0.79538 0.88973 0.80574 1.90365 1.43843 1.50393 1.51383 1.22787 1.03488 0.97552 1.00808 1.23094 1.00411 0.98812 0.95582 1.23091 1.00375 0.93197 1.01599 0.90498 0.88891 0.85524 0.84795 0.85806 0.75630 0.87805 0.87565 0.82837 0.89350 0.84965 0.85097 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.58 12.57 21.88 0.27 -45.31 16 2 C 0.00 -0.12 5.04 85.37 0.43 0.31 16 3 Si 1.12 46.55 29.98 68.60 2.06 48.60 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.51 -29.43 7.66 23.42 0.18 -29.25 16 8 H 0.08 5.11 5.91 -2.91 -0.02 5.09 16 9 C 0.10 5.43 5.18 -21.11 -0.11 5.32 16 10 C -0.22 -11.52 7.86 22.72 0.18 -11.34 16 11 C -0.07 -3.03 10.01 22.26 0.22 -2.80 16 12 C -0.25 -9.86 10.03 22.41 0.22 -9.64 16 13 C -0.04 -1.89 9.53 22.50 0.21 -1.67 16 14 C -0.29 -14.47 5.92 -19.70 -0.12 -14.59 16 15 C 0.56 26.88 7.73 86.66 0.67 27.55 16 16 O -0.57 -30.94 13.55 -4.09 -0.06 -30.99 16 17 N -0.73 -27.15 5.48 -470.10 -2.57 -29.72 16 18 C 0.07 2.06 6.09 85.63 0.52 2.58 16 19 C 0.39 9.36 6.99 29.10 0.20 9.56 16 20 O -0.48 -14.34 15.74 -1.45 -0.02 -14.37 16 21 C -0.23 -3.59 6.12 -11.54 -0.07 -3.66 16 22 C -0.14 -1.89 10.14 30.62 0.31 -1.58 16 23 C -0.15 -1.97 10.05 30.62 0.31 -1.66 16 24 H 0.28 16.34 6.54 -92.70 -0.61 15.73 16 25 H 0.09 4.95 6.93 -2.91 -0.02 4.93 16 26 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.12 4.40 6.41 -2.91 -0.02 4.38 16 29 H 0.41 14.10 5.48 -92.71 -0.51 13.59 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.09 1.50 7.89 -2.39 -0.02 1.48 16 Total: -1.00 -70.48 311.12 3.61 -66.87 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.77 Total: 35.77 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.17 Total: -30.85 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.30 Total: -75.03 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.08 Total: -45.36 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.06 Total: 48.60 kcal Total: -70.48 3.61 -66.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632267256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.022 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds