Wall clock time and date at job start Mon Mar 30 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99605 * 2 1 4 4 H 1.48497 * 109.47410 * 269.99961 * 3 2 1 5 5 H 1.48502 * 109.47414 * 30.00032 * 3 2 1 6 6 H 1.48504 * 109.46935 * 150.00181 * 3 2 1 7 7 C 1.38812 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99630 * 159.81317 * 7 2 1 9 9 N 1.36934 * 120.00077 * 339.81644 * 7 2 1 10 10 C 1.46500 * 120.00011 * 321.07677 * 9 7 2 11 11 C 1.53001 * 109.47499 * 270.00540 * 10 9 7 12 12 C 1.53001 * 109.47101 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.01342 * 53.61912 * 12 11 10 14 14 C 1.53868 * 110.03013 * 175.00007 * 12 11 10 15 15 C 1.54158 * 108.71011 * 166.47071 * 14 12 11 16 16 S 1.82916 * 105.08475 * 332.09089 * 15 14 12 17 17 O 1.42101 * 109.35609 * 115.52079 * 16 15 14 18 18 O 1.42102 * 109.35716 * 248.72379 * 16 15 14 19 19 C 1.55055 * 110.02671 * 292.19255 * 12 11 10 20 20 C 1.46501 * 120.00283 * 141.08573 * 9 7 2 21 21 C 1.53005 * 117.49488 * 345.83816 * 20 9 7 22 22 C 1.52994 * 117.49944 * 54.49770 * 20 9 7 23 23 H 0.96996 * 120.00286 * 355.04632 * 1 2 3 24 24 H 1.09006 * 109.47022 * 30.00950 * 10 9 7 25 25 H 1.09002 * 109.47214 * 150.00124 * 10 9 7 26 26 H 1.08996 * 109.46889 * 299.99605 * 11 10 9 27 27 H 1.08992 * 109.46781 * 60.00246 * 11 10 9 28 28 H 1.09003 * 109.65007 * 286.32646 * 14 12 11 29 29 H 1.09000 * 109.64866 * 46.61457 * 14 12 11 30 30 H 1.09004 * 110.32281 * 90.99288 * 15 14 12 31 31 H 1.09004 * 110.32389 * 213.18965 * 15 14 12 32 32 H 1.09001 * 110.78841 * 316.53942 * 19 12 11 33 33 H 1.08995 * 110.79055 * 80.00501 * 19 12 11 34 34 H 1.09002 * 115.54925 * 200.17263 * 20 9 7 35 35 H 1.08997 * 117.49593 * 215.00620 * 21 20 9 36 36 H 1.09002 * 117.49947 * 0.02562 * 21 20 9 37 37 H 1.09005 * 117.50000 * 359.97438 * 22 20 9 38 38 H 1.09002 * 117.49869 * 144.97640 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0406 -1.2309 -0.3222 9 7 1.3888 -2.3514 0.4102 10 6 0.4659 -2.3197 1.5475 11 6 1.2406 -2.5815 2.8406 12 6 0.2766 -2.5489 4.0283 13 1 -0.5520 -3.2356 3.8551 14 6 1.0186 -2.9336 5.3201 15 6 0.1325 -2.5672 6.5272 16 16 -0.8946 -1.1657 5.9558 17 8 -2.2603 -1.5579 5.9410 18 8 -0.5027 0.0158 6.6413 19 6 -0.2603 -1.1093 4.2370 20 6 1.6468 -3.6129 -0.2886 21 6 2.3425 -3.5372 -1.6493 22 6 3.1038 -4.0582 -0.4278 23 1 -0.4850 0.8368 0.0725 24 1 -0.0108 -1.3408 1.6014 25 1 -0.2963 -3.0882 1.4186 26 1 1.7171 -3.5603 2.7868 27 1 2.0026 -1.8129 2.9695 28 1 1.2174 -4.0053 5.3233 29 1 1.9606 -2.3882 5.3780 30 1 -0.4992 -3.4116 6.8032 31 1 0.7506 -2.2637 7.3722 32 1 0.5440 -0.3794 4.1452 33 1 -1.0647 -0.8908 3.5347 34 1 0.8941 -4.3892 -0.1507 35 1 2.0476 -4.2637 -2.4064 36 1 2.6086 -2.5489 -2.0242 37 1 3.8706 -3.4124 0.0003 38 1 3.3099 -5.1276 -0.3809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686012609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:27 Heat of formation + Delta-G solvation = -56.130032 kcal Electronic energy + Delta-G solvation = -19785.349075 eV Core-core repulsion = 16755.363660 eV Total energy + Delta-G solvation = -3029.985414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.09369 -38.08997 -37.89861 -37.00578 -35.28595 -33.17155 -31.36359 -29.15980 -26.86002 -25.48570 -22.96724 -22.91975 -21.59359 -21.20961 -19.77329 -18.24950 -17.69819 -17.38734 -17.16840 -16.63617 -16.21768 -15.77352 -15.45667 -15.03612 -14.81730 -14.32664 -14.03665 -13.80820 -13.30762 -13.21843 -13.13157 -13.05851 -12.92527 -12.70737 -12.61333 -12.44934 -12.19942 -12.12221 -11.91778 -11.59827 -11.51939 -11.36015 -11.17087 -11.03280 -10.84741 -10.38129 -8.46465 -7.74407 -5.47693 -0.82983 1.41194 1.46264 1.53173 1.67359 2.47959 2.70847 3.09558 3.16722 3.38360 3.51029 3.62599 3.81055 3.84794 4.06113 4.15814 4.33557 4.50478 4.51278 4.59359 4.68288 4.75147 4.84502 4.93725 4.97605 5.07241 5.09248 5.12904 5.22059 5.30227 5.39028 5.57374 5.61909 5.68850 5.93804 6.47959 7.19200 7.89208 8.39339 9.11150 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.006047 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.389017 B = 4629.357639 C = 5591.749673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.028 4.028 3 Si 0.941 3.059 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.254 4.254 8 H 0.050 0.950 9 N -0.569 5.569 10 C 0.140 3.860 11 C -0.105 4.105 12 C -0.084 4.084 13 H 0.103 0.897 14 C -0.108 4.108 15 C -0.557 4.557 16 S 2.384 3.616 17 O -0.981 6.981 18 O -0.988 6.988 19 C -0.578 4.578 20 C 0.103 3.897 21 C -0.203 4.203 22 C -0.200 4.200 23 H 0.250 0.750 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -9.233 11.062 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.067 0.933 9 N -0.286 5.286 10 C 0.014 3.986 11 C -0.146 4.146 12 C -0.105 4.105 13 H 0.121 0.879 14 C -0.146 4.146 15 C -0.690 4.690 16 S 2.574 3.426 17 O -0.979 6.979 18 O -0.985 6.985 19 C -0.709 4.709 20 C -0.006 4.006 21 C -0.242 4.242 22 C -0.240 4.240 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.503 -8.470 11.501 14.362 hybrid contribution 0.776 1.019 -0.915 1.574 sum 2.279 -7.451 10.586 13.145 Atomic orbital electron populations 1.70167 1.06458 1.26294 1.52502 1.25718 0.95524 1.00941 1.00438 0.85713 0.78794 0.80980 0.77582 1.21467 1.21656 1.19604 1.18991 0.93104 0.86444 1.39904 0.93255 1.43604 1.51110 1.02890 1.31016 1.21036 0.90988 1.01332 0.85199 1.21893 0.97649 1.01423 0.93609 1.21908 0.99937 0.91978 0.96631 0.87866 1.22049 0.98532 1.06035 0.87995 1.30256 1.13396 1.17176 1.08187 1.08969 0.76483 0.78039 0.79105 1.93542 1.33423 1.84182 1.86706 1.93529 1.84688 1.47710 1.72559 1.30663 1.12517 1.06005 1.21699 1.21437 0.93281 0.90527 0.95350 1.23064 1.07445 1.01363 0.92333 1.23302 0.97660 1.00364 1.02724 0.94026 0.91278 0.95249 0.91306 0.93375 0.86444 0.89067 0.82115 0.82161 0.85074 0.85652 0.87708 0.88316 0.91438 0.91343 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.07 11.49 21.65 0.25 -50.82 16 2 C -0.03 -1.51 4.97 84.86 0.42 -1.09 16 3 Si 0.94 43.47 29.60 68.60 2.03 45.50 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.25 -13.20 8.00 84.03 0.67 -12.53 16 8 H 0.05 2.63 7.26 -2.91 -0.02 2.61 16 9 N -0.57 -26.42 2.78 -678.02 -1.88 -28.30 16 10 C 0.14 5.84 5.19 86.38 0.45 6.29 16 11 C -0.11 -3.34 5.01 30.59 0.15 -3.19 16 12 C -0.08 -1.98 2.59 -9.80 -0.03 -2.01 16 13 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.11 -1.67 5.75 31.28 0.18 -1.49 16 15 C -0.56 -7.50 7.26 72.37 0.53 -6.98 16 16 S 2.38 57.48 6.11 -56.49 -0.34 57.14 16 17 O -0.98 -30.51 18.15 -127.49 -2.31 -32.82 16 18 O -0.99 -31.21 18.15 -127.49 -2.31 -33.53 16 19 C -0.58 -15.65 5.98 72.69 0.43 -15.22 16 20 C 0.10 4.07 6.61 44.99 0.30 4.36 16 21 C -0.20 -7.71 9.82 30.62 0.30 -7.41 16 22 C -0.20 -6.88 10.09 30.62 0.31 -6.57 16 23 H 0.25 13.71 8.32 -92.71 -0.77 12.93 16 24 H 0.07 3.33 4.69 -2.38 -0.01 3.32 16 25 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.69 8.09 -2.39 -0.02 1.68 16 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.16 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.13 3.70 8.06 -2.39 -0.02 3.68 16 33 H 0.13 3.81 7.79 -2.39 -0.02 3.79 16 34 H 0.11 3.73 8.10 -2.39 -0.02 3.71 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.07 2.98 6.98 -2.39 -0.02 2.96 16 37 H 0.07 2.58 7.99 -2.38 -0.02 2.56 16 38 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -71.46 319.26 0.17 -71.28 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.03 Total: 17.38 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.72 Total: -45.84 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.63 Total: -79.12 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -4.63 Total: -66.35 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 57.48 SS G_CDS: -0.34 Total: 57.14 kcal Total: -71.46 0.17 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686012609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.154 kcal (2) G-P(sol) polarization free energy of solvation -71.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds