Wall clock time and date at job start Mon Mar 30 2020 01:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.52161 * 2 1 4 4 O 1.42899 * 109.47065 * 300.08175 * 3 2 1 5 5 C 1.53040 * 109.49907 * 120.07787 * 2 1 3 6 6 C 1.53047 * 109.53683 * 58.58891 * 5 2 1 7 7 C 1.53191 * 109.31174 * 61.36436 * 6 5 2 8 8 N 1.46924 * 108.77640 * 305.36542 * 7 6 5 9 9 C 1.34773 * 120.63180 * 233.58876 * 8 7 6 10 10 O 1.21283 * 120.00360 * 179.72484 * 9 8 7 11 11 C 1.50706 * 120.00081 * 359.97438 * 9 8 7 12 12 S 1.80996 * 109.47276 * 179.72626 * 11 9 8 13 13 C 1.76195 * 99.99998 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00413 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99814 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47100 * 89.99929 * 17 15 13 19 19 H 1.48505 * 109.47262 * 210.00143 * 17 15 13 20 20 H 1.48505 * 109.47183 * 330.00192 * 17 15 13 21 21 C 1.46931 * 118.74139 * 53.85916 * 8 7 6 22 22 H 1.08998 * 109.46932 * 299.91749 * 1 2 3 23 23 H 1.08997 * 109.47472 * 59.91926 * 1 2 3 24 24 H 1.09009 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47444 * 60.07978 * 3 2 1 26 26 H 1.08997 * 109.47078 * 180.02562 * 3 2 1 27 27 H 0.96702 * 114.00212 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.46027 * 298.57112 * 5 2 1 29 29 H 1.08996 * 109.44974 * 178.60241 * 5 2 1 30 30 H 1.08997 * 109.49628 * 301.41158 * 6 5 2 31 31 H 1.08998 * 109.49900 * 181.31608 * 6 5 2 32 32 H 1.08998 * 109.58433 * 185.58258 * 7 6 5 33 33 H 1.08995 * 109.70459 * 65.22025 * 7 6 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 35 35 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 36 36 H 0.97001 * 120.00629 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.57998 * 65.92298 * 21 8 7 38 38 H 1.09000 * 109.59019 * 186.35313 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 8 1.5640 2.1166 -1.1658 5 6 2.0409 -0.7230 1.2484 6 6 1.5031 -2.1558 1.2661 7 6 2.0141 -2.9040 0.0308 8 7 1.6517 -2.1382 -1.1695 9 6 0.9749 -2.7221 -2.1782 10 8 0.6772 -2.0778 -3.1617 11 6 0.5831 -4.1741 -2.0816 12 16 -0.3141 -4.6577 -3.5773 13 6 -0.6394 -6.3490 -3.2056 14 1 -0.2991 -6.7718 -2.2718 15 6 -1.3330 -7.1381 -4.1127 16 7 -1.7473 -6.6230 -5.2509 17 14 -1.6772 -8.9313 -3.7189 18 1 -2.9765 -9.0415 -3.0083 19 1 -1.7350 -9.7129 -4.9803 20 1 -0.5938 -9.4652 -2.8549 21 6 2.0462 -0.7253 -1.2520 22 1 -0.3633 0.5125 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0278 -0.0005 25 1 1.6796 1.9558 0.8907 26 1 3.1313 1.4411 -0.0005 27 1 1.8504 3.0379 -1.2321 28 1 1.6988 -0.1958 2.1389 29 1 3.1305 -0.7443 1.2351 30 1 0.4134 -2.1355 1.2542 31 1 1.8482 -2.6628 2.1671 32 1 1.5555 -3.8918 -0.0137 33 1 3.0979 -3.0064 0.0854 34 1 1.4794 -4.7863 -1.9816 35 1 -0.0560 -4.3209 -1.2110 36 1 -2.2323 -7.1742 -5.8848 37 1 3.1327 -0.6515 -1.2984 38 1 1.6089 -0.2751 -2.1432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688079664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:17 Heat of formation + Delta-G solvation = -95.518752 kcal Electronic energy + Delta-G solvation = -19512.523129 eV Core-core repulsion = 16480.829692 eV Total energy + Delta-G solvation = -3031.693437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29527 -38.06939 -36.40023 -33.64380 -32.40236 -31.71683 -29.46166 -27.11967 -25.96828 -25.54253 -24.95538 -22.21422 -19.67297 -18.43952 -17.65948 -17.50320 -16.62890 -15.83887 -15.37398 -14.88166 -14.77998 -14.60514 -14.36899 -13.88127 -13.68095 -13.36671 -12.95522 -12.83829 -12.59010 -12.50479 -11.92993 -11.60451 -11.46548 -11.22628 -11.04581 -11.02581 -10.98200 -10.73948 -10.62339 -10.44048 -10.17986 -9.76872 -9.24787 -9.04043 -8.39278 -8.18054 -6.46443 -6.18728 -3.89009 3.00679 3.14537 3.24020 3.28442 3.32361 3.65359 3.95737 4.22928 4.53733 4.59573 4.72915 4.83897 5.02044 5.06664 5.16029 5.16285 5.27049 5.32786 5.38313 5.44515 5.59294 5.66062 5.74719 5.77686 5.83429 5.91727 5.95219 5.98123 6.09012 6.15798 6.23079 6.44660 6.74284 7.45165 7.61784 7.67121 8.37783 8.66377 9.26345 10.88704 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.004145 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.845628 B = 6753.781051 C = 7225.589587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C 0.089 3.911 4 O -0.565 6.565 5 C -0.107 4.107 6 C -0.136 4.136 7 C 0.106 3.894 8 N -0.619 5.619 9 C 0.534 3.466 10 O -0.515 6.515 11 C -0.150 4.150 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.129 3.871 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.377 0.623 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.058 0.942 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 13.472 15.863 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C 0.011 3.989 4 O -0.370 6.370 5 C -0.145 4.145 6 C -0.175 4.175 7 C -0.017 4.017 8 N -0.355 5.355 9 C 0.322 3.678 10 O -0.389 6.389 11 C -0.300 4.300 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.006 3.994 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.223 0.777 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.714 13.794 14.099 21.564 hybrid contribution 0.475 -1.371 1.683 2.222 sum 9.189 12.423 15.782 22.087 Atomic orbital electron populations 1.21766 0.93291 1.02247 1.01858 1.21028 0.97478 0.93063 0.96014 1.22143 0.96909 0.92275 0.87604 1.86567 1.77268 1.28826 1.44304 1.21517 1.00442 0.95794 0.96733 1.21958 1.02117 0.95500 0.97883 1.21710 1.00033 0.95754 0.84208 1.48079 1.57851 1.11020 1.18526 1.20306 0.76540 0.88986 0.81982 1.90695 1.52860 1.64785 1.30554 1.23552 1.04551 0.94522 1.07416 1.85419 1.69372 1.11348 1.17293 1.22864 1.42405 0.95751 1.07297 0.90996 1.24984 0.94915 0.99200 0.94448 1.70021 1.35763 1.36586 1.07917 0.86179 0.78751 0.82688 0.77941 1.20285 1.20762 1.19705 1.21564 0.98480 0.80626 0.98724 0.93266 0.91650 0.92147 0.93602 0.93724 0.77693 0.91647 0.91707 0.90756 0.90654 0.89252 0.91648 0.89385 0.89387 0.92208 0.92357 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 7.85 37.16 0.29 -1.38 16 2 C -0.07 -0.80 0.60 -154.16 -0.09 -0.89 16 3 C 0.09 0.77 5.92 37.16 0.22 0.99 16 4 O -0.56 -5.69 12.44 -35.23 -0.44 -6.12 16 5 C -0.11 -0.91 4.71 -26.69 -0.13 -1.03 16 6 C -0.14 -1.25 5.74 -26.61 -0.15 -1.41 16 7 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 8 N -0.62 -9.33 2.40 -172.50 -0.41 -9.74 16 9 C 0.53 10.67 7.72 -10.98 -0.08 10.59 16 10 O -0.51 -12.38 15.27 5.56 0.08 -12.30 16 11 C -0.15 -3.14 4.50 36.01 0.16 -2.98 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 14 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 15 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 16 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 17 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.13 1.76 4.93 -3.48 -0.02 1.74 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 24 H 0.06 0.84 5.97 -51.92 -0.31 0.53 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.38 1.98 9.12 45.56 0.42 2.40 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.71 7.96 -51.92 -0.41 1.30 16 35 H 0.09 1.71 7.68 -51.92 -0.40 1.31 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.71 6.74 -51.93 -0.35 1.36 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -35.45 316.74 -7.14 -42.59 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.02 Total: 0.18 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.37 Total: -6.27 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.32 Total: -35.47 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.35 Total: -18.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.45 -7.14 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688079664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.934 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds