Wall clock time and date at job start Mon Mar 30 2020 01:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.52161 * 2 1 4 4 O 1.42899 * 109.47065 * 300.08175 * 3 2 1 5 5 C 1.53040 * 109.49907 * 120.07787 * 2 1 3 6 6 C 1.53047 * 109.53683 * 58.58891 * 5 2 1 7 7 C 1.53191 * 109.31174 * 61.36436 * 6 5 2 8 8 N 1.46924 * 108.77640 * 305.36542 * 7 6 5 9 9 C 1.34773 * 120.63180 * 233.58876 * 8 7 6 10 10 O 1.21283 * 120.00360 * 179.72484 * 9 8 7 11 11 C 1.50706 * 120.00081 * 359.97438 * 9 8 7 12 12 S 1.80996 * 109.47276 * 179.72626 * 11 9 8 13 13 C 1.76195 * 99.99998 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00413 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99814 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47100 * 89.99929 * 17 15 13 19 19 H 1.48505 * 109.47262 * 210.00143 * 17 15 13 20 20 H 1.48505 * 109.47183 * 330.00192 * 17 15 13 21 21 C 1.46931 * 118.74139 * 53.85916 * 8 7 6 22 22 H 1.08998 * 109.46932 * 299.91749 * 1 2 3 23 23 H 1.08997 * 109.47472 * 59.91926 * 1 2 3 24 24 H 1.09009 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47444 * 60.07978 * 3 2 1 26 26 H 1.08997 * 109.47078 * 180.02562 * 3 2 1 27 27 H 0.96702 * 114.00212 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.46027 * 298.57112 * 5 2 1 29 29 H 1.08996 * 109.44974 * 178.60241 * 5 2 1 30 30 H 1.08997 * 109.49628 * 301.41158 * 6 5 2 31 31 H 1.08998 * 109.49900 * 181.31608 * 6 5 2 32 32 H 1.08998 * 109.58433 * 185.58258 * 7 6 5 33 33 H 1.08995 * 109.70459 * 65.22025 * 7 6 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 35 35 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 36 36 H 0.97001 * 120.00629 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.57998 * 65.92298 * 21 8 7 38 38 H 1.09000 * 109.59019 * 186.35313 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 8 1.5640 2.1166 -1.1658 5 6 2.0409 -0.7230 1.2484 6 6 1.5031 -2.1558 1.2661 7 6 2.0141 -2.9040 0.0308 8 7 1.6517 -2.1382 -1.1695 9 6 0.9749 -2.7221 -2.1782 10 8 0.6772 -2.0778 -3.1617 11 6 0.5831 -4.1741 -2.0816 12 16 -0.3141 -4.6577 -3.5773 13 6 -0.6394 -6.3490 -3.2056 14 1 -0.2991 -6.7718 -2.2718 15 6 -1.3330 -7.1381 -4.1127 16 7 -1.7473 -6.6230 -5.2509 17 14 -1.6772 -8.9313 -3.7189 18 1 -2.9765 -9.0415 -3.0083 19 1 -1.7350 -9.7129 -4.9803 20 1 -0.5938 -9.4652 -2.8549 21 6 2.0462 -0.7253 -1.2520 22 1 -0.3633 0.5125 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0278 -0.0005 25 1 1.6796 1.9558 0.8907 26 1 3.1313 1.4411 -0.0005 27 1 1.8504 3.0379 -1.2321 28 1 1.6988 -0.1958 2.1389 29 1 3.1305 -0.7443 1.2351 30 1 0.4134 -2.1355 1.2542 31 1 1.8482 -2.6628 2.1671 32 1 1.5555 -3.8918 -0.0137 33 1 3.0979 -3.0064 0.0854 34 1 1.4794 -4.7863 -1.9816 35 1 -0.0560 -4.3209 -1.2110 36 1 -2.2323 -7.1742 -5.8848 37 1 3.1327 -0.6515 -1.2984 38 1 1.6089 -0.2751 -2.1432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688079664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:17 Heat of formation + Delta-G solvation = -121.841199 kcal Electronic energy + Delta-G solvation = -19513.664556 eV Core-core repulsion = 16480.829692 eV Total energy + Delta-G solvation = -3032.834864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46003 -39.29391 -37.30627 -34.76658 -34.58889 -32.63476 -31.04422 -28.10043 -27.70672 -26.74372 -26.17027 -23.07641 -21.02121 -19.70019 -19.28726 -18.30257 -18.07545 -17.02441 -16.88202 -16.69195 -15.96986 -15.78780 -15.54397 -15.18304 -14.66306 -14.50753 -14.39709 -14.26878 -13.72261 -13.51535 -13.42797 -13.17187 -12.89372 -12.66134 -12.62653 -12.29619 -12.11008 -11.85586 -11.71450 -11.47234 -11.31991 -11.14715 -10.85301 -10.79919 -10.26980 -9.61591 -8.69011 -8.34829 -6.14097 1.24982 1.42635 1.45594 1.56396 1.58038 2.12110 2.27077 2.99217 3.24354 3.31508 3.65783 3.76123 3.82933 4.03286 4.06352 4.19340 4.23940 4.37056 4.41751 4.53781 4.58180 4.64806 4.69569 4.80973 4.83740 4.90325 4.97812 5.07431 5.10105 5.25044 5.31053 5.40718 5.51993 5.59798 6.19172 6.32323 6.99561 7.05868 7.16149 8.74657 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.004145 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.845628 B = 6753.781051 C = 7225.589587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 C 0.089 3.911 4 O -0.595 6.595 5 C -0.101 4.101 6 C -0.133 4.133 7 C 0.095 3.905 8 N -0.605 5.605 9 C 0.529 3.471 10 O -0.570 6.570 11 C -0.121 4.121 12 S -0.156 6.156 13 C -0.546 4.546 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 1.001 2.999 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.256 1.256 21 C 0.126 3.874 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.395 0.605 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.226 12.933 19.429 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C 0.011 3.989 4 O -0.404 6.404 5 C -0.139 4.139 6 C -0.171 4.171 7 C -0.027 4.027 8 N -0.338 5.338 9 C 0.317 3.683 10 O -0.449 6.449 11 C -0.272 4.272 12 S 0.072 5.928 13 C -0.693 4.693 14 H 0.101 0.899 15 C -0.191 4.191 16 N -0.549 5.549 17 Si 0.822 3.178 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.180 1.180 21 C 0.004 3.996 22 H 0.090 0.910 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.245 0.755 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.449 13.285 17.729 24.495 hybrid contribution 0.010 -1.083 0.639 1.258 sum 10.459 12.202 18.368 24.406 Atomic orbital electron populations 1.21715 0.95134 1.00688 1.01255 1.21076 0.95905 0.94716 0.95627 1.22224 0.98055 0.90745 0.87890 1.86539 1.77951 1.30583 1.45309 1.21530 1.01627 0.94839 0.95880 1.21964 1.01224 0.96214 0.97669 1.22110 1.01793 0.95430 0.83341 1.48105 1.55603 1.11891 1.18223 1.20180 0.77130 0.88469 0.82543 1.90675 1.55528 1.65628 1.33034 1.23350 1.04411 0.95653 1.03745 1.85642 1.71403 1.12787 1.22997 1.23191 1.42696 0.95559 1.07891 0.89857 1.26157 0.94275 1.04703 0.93997 1.70195 1.36676 1.38751 1.09268 0.84927 0.79154 0.75676 0.78044 1.19247 1.20274 1.18022 1.21690 0.99386 0.79586 0.98956 0.91045 0.94993 0.94166 0.91402 0.91639 0.75525 0.89364 0.89603 0.92323 0.87504 0.89649 0.88931 0.87461 0.87657 0.91980 0.90246 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.85 71.98 0.57 -2.64 16 2 C -0.07 -1.40 0.60 -51.96 -0.03 -1.43 16 3 C 0.09 1.29 5.92 71.98 0.43 1.72 16 4 O -0.60 -11.56 12.44 -148.98 -1.85 -13.42 16 5 C -0.10 -1.26 4.71 30.62 0.14 -1.12 16 6 C -0.13 -1.94 5.74 30.67 0.18 -1.77 16 7 C 0.09 1.88 6.34 86.36 0.55 2.43 16 8 N -0.60 -17.83 2.40 -818.07 -1.96 -19.79 16 9 C 0.53 21.75 7.72 87.66 0.68 22.42 16 10 O -0.57 -29.16 15.27 -3.04 -0.05 -29.21 16 11 C -0.12 -5.11 4.50 71.24 0.32 -4.79 16 12 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 13 C -0.55 -31.82 9.50 67.95 0.65 -31.17 16 14 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 15 C 0.01 0.77 5.49 84.86 0.47 1.24 16 16 N -0.91 -57.13 13.22 21.65 0.29 -56.85 16 17 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 C 0.13 3.37 4.93 86.51 0.43 3.80 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.03 0.97 7.68 -2.39 -0.02 0.95 16 24 H 0.04 1.12 5.97 -2.38 -0.01 1.11 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.40 3.74 9.12 -74.06 -0.68 3.06 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.07 6.33 -2.39 -0.02 1.06 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 4.10 7.96 -2.39 -0.02 4.08 16 35 H 0.11 4.06 7.68 -2.40 -0.02 4.04 16 36 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 2.10 6.74 -2.39 -0.02 2.09 16 Total: -1.00 -82.29 316.74 2.03 -80.26 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.38 Total: 14.38 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.36 Total: -11.30 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.68 Total: -76.64 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.90 Total: -42.62 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -82.29 2.03 -80.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688079664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.584 kcal (2) G-P(sol) polarization free energy of solvation -82.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds