Wall clock time and date at job start Mon Mar 30 2020 01:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47080 * 108.98850 * 3 2 1 5 5 C 1.37100 * 120.00157 * 263.92405 * 4 3 2 6 6 H 1.07994 * 119.99982 * 199.75622 * 5 4 3 7 7 C 1.38953 * 119.99590 * 19.76157 * 5 4 3 8 8 N 1.31405 * 120.00197 * 21.74650 * 7 5 4 9 9 Si 1.86807 * 119.99439 * 201.74323 * 7 5 4 10 10 H 1.48505 * 109.47289 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46794 * 119.99910 * 9 7 5 12 12 H 1.48493 * 109.47033 * 239.99823 * 9 7 5 13 13 C 1.34782 * 119.99816 * 83.92782 * 4 3 2 14 14 O 1.21287 * 119.99748 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99785 * 359.97438 * 13 4 3 16 16 O 1.42907 * 109.46851 * 180.02562 * 15 13 4 17 17 C 1.35901 * 116.99936 * 180.02562 * 16 15 13 18 18 C 1.38755 * 120.05611 * 359.97438 * 17 16 15 19 19 C 1.38122 * 119.94434 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.05215 * 0.02562 * 19 18 17 21 21 C 1.38246 * 120.11720 * 0.02562 * 20 19 18 22 22 C 1.38164 * 120.05132 * 359.97438 * 21 20 19 23 23 C 1.50695 * 120.02453 * 179.97438 * 22 21 20 24 24 H 4.40638 * 5.51397 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46987 * 348.98870 * 3 2 1 26 26 H 1.09002 * 109.46959 * 228.99029 * 3 2 1 27 27 H 0.97003 * 119.99467 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47409 * 60.00263 * 15 13 4 29 29 H 1.08994 * 109.47435 * 299.99876 * 15 13 4 30 30 H 1.08000 * 120.02600 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.97369 * 179.72155 * 19 18 17 32 32 H 1.08004 * 119.94136 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.96969 * 179.97438 * 21 20 19 34 34 H 1.09006 * 109.47557 * 270.02264 * 23 22 21 35 35 H 1.08995 * 109.47744 * 30.02792 * 23 22 21 36 36 H 1.09004 * 109.47510 * 150.02945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4503 -1.3060 5 6 3.4816 -0.4693 -2.2617 6 1 4.1247 -0.1809 -3.0800 7 6 3.0061 -1.7722 -2.1775 8 7 1.9252 -2.0332 -1.4773 9 14 3.9036 -3.1527 -3.0598 10 1 5.0832 -2.6001 -3.7728 11 1 4.3534 -4.1632 -2.0689 12 1 2.9879 -3.7923 -4.0383 13 6 3.2418 1.7680 -1.5680 14 8 3.6464 2.1402 -2.6492 15 6 2.8595 2.7787 -0.5177 16 8 3.0596 4.0975 -1.0305 17 6 2.7607 5.1332 -0.2030 18 6 2.2840 4.8853 1.0763 19 6 1.9805 5.9397 1.9153 20 6 2.1509 7.2415 1.4810 21 6 2.6247 7.4912 0.2065 22 6 2.9297 6.4399 -0.6365 23 6 3.4456 6.7128 -2.0259 24 1 -1.0500 0.0001 0.0002 25 1 3.0099 -1.0080 0.1963 26 1 3.0091 0.6752 0.7755 27 1 1.5936 -2.9429 -1.4182 28 1 3.4789 2.6349 0.3676 29 1 1.8105 2.6479 -0.2523 30 1 2.1505 3.8688 1.4158 31 1 1.6052 5.7474 2.9095 32 1 1.9125 8.0647 2.1384 33 1 2.7564 8.5088 -0.1303 34 1 2.6062 6.7853 -2.7175 35 1 4.0014 7.6504 -2.0296 36 1 4.1024 5.8999 -2.3358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701169431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:59 Heat of formation + Delta-G solvation = 4.447424 kcal Electronic energy + Delta-G solvation = -20363.627527 eV Core-core repulsion = 17200.824998 eV Total energy + Delta-G solvation = -3162.802530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40820 -40.32763 -38.27971 -37.06153 -34.14363 -33.70279 -33.09949 -31.12819 -29.76724 -28.17771 -27.61050 -26.30233 -23.33038 -22.43913 -21.01598 -19.77243 -19.15125 -18.48752 -17.78915 -17.23243 -17.10177 -16.46997 -16.34211 -15.87763 -15.64489 -15.19278 -14.69473 -14.61155 -14.09334 -14.06096 -13.98858 -13.56280 -13.50877 -13.15318 -12.98881 -12.81519 -12.54241 -12.21560 -12.15538 -12.04286 -11.76801 -11.23128 -11.12982 -10.72512 -10.40671 -9.90171 -9.74611 -9.06616 -8.36956 -6.00175 0.40236 0.51322 1.32441 1.42121 1.54284 1.71342 1.88747 2.22904 2.29212 2.37878 2.83974 2.98454 3.20093 3.75701 3.78154 3.89990 3.97370 4.00646 4.14781 4.24341 4.44322 4.45736 4.59115 4.68352 4.78373 4.78781 4.87869 5.00448 5.32791 5.37408 5.43792 5.45738 5.54785 5.61944 5.87272 6.00350 6.33418 6.48878 7.06770 7.10238 7.29473 7.85678 8.61545 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.004568 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.731686 B = 6127.897265 C = 6849.236529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.356 4.356 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.866 5.866 9 Si 0.986 3.014 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.280 1.280 13 C 0.437 3.563 14 O -0.616 6.616 15 C 0.068 3.932 16 O -0.316 6.316 17 C 0.095 3.905 18 C -0.218 4.218 19 C -0.087 4.087 20 C -0.155 4.155 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.104 4.104 24 H 0.233 0.767 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.274 0.726 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 12.150 10.827 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.163 4.163 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.483 4.483 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.502 5.502 9 Si 0.809 3.191 10 H -0.200 1.200 11 H -0.186 1.186 12 H -0.206 1.206 13 C 0.226 3.774 14 O -0.502 6.502 15 C -0.010 4.010 16 O -0.229 6.229 17 C 0.050 3.950 18 C -0.236 4.236 19 C -0.105 4.105 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.140 4.140 23 C -0.160 4.160 24 H 0.250 0.750 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.152 0.848 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.540 12.137 10.156 15.900 hybrid contribution -0.030 -1.308 -0.664 1.467 sum -1.570 10.829 9.492 14.486 Atomic orbital electron populations 1.25162 0.96356 1.03249 1.00684 1.23366 0.94925 0.98285 0.99682 1.18400 0.84788 1.01916 0.84133 1.43804 1.55723 1.03393 1.13114 1.19586 1.29843 0.90482 1.08361 0.90785 1.26000 0.95169 1.00169 0.98269 1.70171 1.17864 1.21650 1.40558 0.85008 0.78225 0.77615 0.78218 1.19966 1.18603 1.20561 1.20423 0.84521 0.83714 0.88764 1.90510 1.52167 1.79886 1.27644 1.22344 1.02481 0.80217 0.95938 1.86127 1.82159 1.13377 1.41247 1.19419 0.97276 0.87852 0.90436 1.21508 1.06740 1.01686 0.93716 1.21297 0.97220 0.92035 0.99927 1.21449 1.01825 0.97466 0.96526 1.21213 0.97030 0.98499 0.93407 1.19613 1.05418 0.90121 0.98860 1.20589 1.00814 1.02287 0.92346 0.75040 0.88505 0.88012 0.91542 0.87741 0.89178 0.84805 0.83032 0.82689 0.82705 0.91633 0.89123 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.05 19.25 74.32 1.43 -7.62 16 2 C -0.16 -6.83 10.75 31.13 0.33 -6.49 16 3 C 0.23 9.73 4.91 84.58 0.42 10.14 16 4 N -0.44 -22.63 2.60 -645.41 -1.68 -24.31 16 5 C -0.36 -20.07 9.28 84.04 0.78 -19.29 16 6 H 0.07 4.55 7.42 -2.91 -0.02 4.52 16 7 C 0.01 0.44 4.83 84.93 0.41 0.85 16 8 N -0.87 -44.25 9.59 21.66 0.21 -44.04 16 9 Si 0.99 41.48 29.61 68.60 2.03 43.51 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 13 C 0.44 22.51 7.64 87.65 0.67 23.18 16 14 O -0.62 -37.59 16.17 15.99 0.26 -37.33 16 15 C 0.07 2.70 3.83 71.23 0.27 2.97 16 16 O -0.32 -13.12 8.71 -73.40 -0.64 -13.76 16 17 C 0.10 3.18 6.66 22.51 0.15 3.33 16 18 C -0.22 -5.93 9.04 22.37 0.20 -5.73 16 19 C -0.09 -1.81 10.04 22.25 0.22 -1.59 16 20 C -0.15 -2.89 10.04 22.28 0.22 -2.67 16 21 C -0.08 -1.79 9.70 22.25 0.22 -1.57 16 22 C -0.14 -4.05 5.89 -19.77 -0.12 -4.17 16 23 C -0.10 -2.91 9.79 71.23 0.70 -2.21 16 24 H 0.23 6.89 7.80 -4.42 -0.03 6.85 16 25 H 0.10 4.31 6.60 -2.38 -0.02 4.30 16 26 H 0.10 3.37 6.70 -2.39 -0.02 3.35 16 27 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 28 H 0.10 3.39 6.94 -2.39 -0.02 3.37 16 29 H 0.09 3.32 7.01 -2.39 -0.02 3.30 16 30 H 0.13 3.34 6.30 -2.91 -0.02 3.33 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.04 1.49 7.53 -2.38 -0.02 1.47 16 Total: -1.00 -72.77 314.66 7.17 -65.59 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.08 Total: 21.18 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 5.91 Total: -10.86 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.47 Total: -68.35 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.38 Total: -51.08 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -72.77 7.17 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701169431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.041 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds