Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 N 1.46492 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00063 * 85.00074 * 7 6 5 9 9 O 1.21283 * 119.99825 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00270 * 180.02562 * 8 7 6 11 11 S 1.80999 * 109.47213 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99925 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00121 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00243 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99449 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00343 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47242 * 89.99811 * 16 14 12 18 18 H 1.48499 * 109.47384 * 210.00449 * 16 14 12 19 19 H 1.48502 * 109.47140 * 330.00413 * 16 14 12 20 20 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 21 21 C 1.52997 * 109.47445 * 300.00628 * 20 6 5 22 22 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 25 25 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 29 29 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 30 30 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 31 31 H 0.97000 * 120.00270 * 265.00060 * 7 6 5 32 32 H 1.09005 * 109.46927 * 299.99485 * 10 8 7 33 33 H 1.08997 * 109.47517 * 59.99748 * 10 8 7 34 34 H 0.97003 * 119.99529 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46726 * 180.02562 * 20 6 5 36 36 H 1.09002 * 109.46589 * 60.00959 * 20 6 5 37 37 H 1.09002 * 109.47045 * 300.00058 * 21 20 6 38 38 H 1.09000 * 109.47140 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 7 1.5511 -4.2660 0.0005 8 6 2.2274 -5.2205 -0.6689 9 8 3.2405 -4.9359 -1.2719 10 6 1.7243 -6.6409 -0.6691 11 16 2.8410 -7.6765 -1.6471 12 6 2.0372 -9.2355 -1.4805 13 1 1.1298 -9.3160 -0.9003 14 6 2.5700 -10.3604 -2.0949 15 7 3.6762 -10.2624 -2.8016 16 14 1.7182 -12.0133 -1.9177 17 1 0.7349 -12.1839 -3.0174 18 1 2.7280 -13.1001 -1.9835 19 1 1.0144 -12.0699 -0.6113 20 6 1.5299 -2.1637 1.2494 21 6 2.0399 -0.7212 1.2493 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7211 1.8653 -0.7650 26 1 1.6767 -0.2075 -2.1392 27 1 3.1301 -0.7217 -1.2489 28 1 1.8930 -2.6775 -2.1393 29 1 0.4400 -2.1638 -1.2491 30 1 3.1299 -2.8850 0.0002 31 1 0.7406 -4.4935 0.4824 32 1 1.6873 -7.0134 0.3547 33 1 0.7251 -6.6725 -1.1035 34 1 4.0488 -11.0485 -3.2307 35 1 1.8936 -2.6773 2.1394 36 1 0.4399 -2.1637 1.2493 37 1 3.1300 -0.7212 1.2493 38 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703580086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -136.964272 kcal Electronic energy + Delta-G solvation = -18935.834381 eV Core-core repulsion = 15902.343731 eV Total energy + Delta-G solvation = -3033.490650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27728 -39.93898 -37.00722 -34.61976 -34.55204 -31.91990 -31.59506 -29.81050 -27.73241 -27.26761 -23.90819 -23.05812 -21.62219 -20.20479 -19.62563 -17.95756 -17.73638 -17.44938 -16.87996 -16.44564 -16.31816 -15.90132 -15.69119 -14.88811 -14.77394 -14.57650 -14.21995 -13.66537 -13.61784 -13.35468 -13.17230 -13.16475 -12.89074 -12.78102 -12.61585 -12.55787 -12.34454 -12.08331 -11.73873 -11.60111 -11.15905 -11.13993 -10.92152 -10.67673 -10.27322 -10.06578 -8.66944 -8.34748 -6.12933 1.27214 1.42697 1.47394 1.57801 1.62279 2.25165 2.29277 2.99455 3.23863 3.34179 3.60813 3.69927 3.94551 4.00429 4.10816 4.12706 4.29742 4.31912 4.36001 4.45285 4.51051 4.60669 4.71211 4.85990 4.94437 5.02967 5.05216 5.14946 5.15255 5.21874 5.34756 5.41741 5.45435 5.56630 6.19753 6.54078 6.90698 7.06520 7.27553 8.74521 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.055441 B = 0.003171 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.918103 B = 8827.419455 C = 8989.144926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.131 3.869 3 O -0.578 6.578 4 C -0.137 4.137 5 C -0.124 4.124 6 C 0.143 3.857 7 N -0.708 5.708 8 C 0.534 3.466 9 O -0.566 6.566 10 C -0.129 4.129 11 S -0.154 6.154 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 1.000 3.000 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.257 1.257 20 C -0.113 4.113 21 C -0.103 4.103 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.390 0.610 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 20.327 8.747 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.091 3.909 3 O -0.386 6.386 4 C -0.175 4.175 5 C -0.163 4.163 6 C 0.038 3.962 7 N -0.362 5.362 8 C 0.319 3.681 9 O -0.444 6.444 10 C -0.280 4.280 11 S 0.073 5.927 12 C -0.694 4.694 13 H 0.102 0.898 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.181 1.181 20 C -0.151 4.151 21 C -0.141 4.141 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.240 0.760 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.254 0.746 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.168 20.537 8.223 23.946 hybrid contribution -1.534 -1.356 -0.036 2.048 sum -10.702 19.181 8.186 23.440 Atomic orbital electron populations 1.22552 0.94196 1.03638 1.03089 1.21175 0.93733 0.81702 0.94326 1.86504 1.77867 1.23611 1.50627 1.22148 1.00934 0.95293 0.99129 1.21881 1.02075 0.95103 0.97251 1.21049 0.98776 0.79951 0.96385 1.45810 1.29481 1.07689 1.53190 1.20093 0.83174 0.86779 0.78011 1.90692 1.26500 1.82886 1.44362 1.23379 1.04359 0.94684 1.05625 1.85602 1.36410 1.03975 1.66708 1.23211 1.13782 0.94176 1.38220 0.89849 1.26147 0.95628 1.03631 0.93835 1.70190 1.20907 1.31728 1.32014 0.84937 0.77814 0.75783 0.79342 1.19282 1.20366 1.18119 1.21784 1.02840 0.94314 0.96171 1.21384 1.00957 0.94212 0.97509 0.91450 0.90397 0.91420 0.76016 0.90127 0.92811 0.94141 0.89331 0.92419 0.74575 0.87188 0.87128 0.92010 0.89912 0.88433 0.92469 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.12 71.98 0.58 -1.31 16 2 C 0.13 1.94 1.15 -10.79 -0.01 1.92 16 3 O -0.58 -9.19 12.98 -148.98 -1.93 -11.12 16 4 C -0.14 -2.43 5.07 30.59 0.16 -2.28 16 5 C -0.12 -2.61 5.22 30.59 0.16 -2.45 16 6 C 0.14 3.18 2.45 44.99 0.11 3.29 16 7 N -0.71 -17.27 5.08 -442.54 -2.25 -19.52 16 8 C 0.53 19.57 7.81 87.66 0.68 20.25 16 9 O -0.57 -26.47 15.53 -3.04 -0.05 -26.52 16 10 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 11 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 12 C -0.55 -31.18 9.50 67.96 0.65 -30.53 16 13 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 14 C 0.01 0.70 5.49 84.86 0.47 1.16 16 15 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 16 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 C -0.11 -1.64 5.12 30.60 0.16 -1.48 16 21 C -0.10 -1.60 5.10 30.59 0.16 -1.44 16 22 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.08 0.76 4.81 -2.39 -0.01 0.75 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.39 3.28 9.05 -74.06 -0.67 2.61 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.47 6.43 -2.39 -0.02 1.46 16 30 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 31 H 0.42 6.95 8.60 -92.71 -0.80 6.15 16 32 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 0.97 6.43 -2.39 -0.02 0.96 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.87 319.87 0.07 -77.79 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.39 Total: 17.03 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.55 Total: -17.49 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.96 Total: -75.48 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.98 Total: -37.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.87 0.07 -77.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703580086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.169 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds