Wall clock time and date at job start Mon Mar 30 2020 01:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48497 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47258 * 299.99847 * 3 2 1 6 6 H 1.48497 * 109.47040 * 59.99858 * 3 2 1 7 7 C 1.37877 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00031 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52513 * 60.08315 * 9 7 2 11 11 C 1.53046 * 109.49738 * 300.00253 * 9 7 2 12 12 C 1.53039 * 109.52798 * 178.67638 * 11 9 7 13 13 C 1.53195 * 109.31257 * 61.36716 * 12 11 9 14 14 N 1.46919 * 108.77845 * 305.36660 * 13 12 11 15 15 S 1.65596 * 120.63444 * 233.62795 * 14 13 12 16 16 O 1.42098 * 104.28054 * 206.07373 * 15 14 13 17 17 O 1.42101 * 104.27452 * 333.93041 * 15 14 13 18 18 C 1.81398 * 104.44933 * 90.00150 * 15 14 13 19 19 C 1.53786 * 113.61410 * 282.50038 * 18 15 14 20 20 C 1.53779 * 87.07972 * 220.01992 * 19 18 15 21 21 C 1.53772 * 87.08417 * 25.43235 * 20 19 18 22 22 C 1.46931 * 118.73612 * 53.60997 * 14 13 12 23 23 H 0.97009 * 119.99736 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46115 * 58.66091 * 11 9 7 25 25 H 1.09004 * 109.45806 * 298.68975 * 11 9 7 26 26 H 1.08997 * 109.50134 * 181.32407 * 12 11 9 27 27 H 1.09006 * 109.49908 * 301.38992 * 12 11 9 28 28 H 1.08997 * 109.58182 * 65.15696 * 13 12 11 29 29 H 1.09002 * 109.58573 * 185.43694 * 13 12 11 30 30 H 1.08999 * 112.85123 * 53.80419 * 18 15 14 31 31 H 1.09003 * 113.61382 * 334.56380 * 19 18 15 32 32 H 1.08992 * 113.61508 * 105.46864 * 19 18 15 33 33 H 1.09003 * 113.61573 * 270.87971 * 20 19 18 34 34 H 1.09000 * 113.69027 * 139.99513 * 20 19 18 35 35 H 1.08999 * 113.61937 * 220.02002 * 21 20 19 36 36 H 1.09004 * 113.61936 * 89.11978 * 21 20 19 37 37 H 1.08998 * 109.58959 * 66.17523 * 22 14 13 38 38 H 1.09003 * 109.58181 * 186.46006 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6247 -2.5591 -0.8884 11 6 0.3712 -2.5800 1.2515 12 6 -0.4192 -3.8904 1.2368 13 6 0.5568 -5.0710 1.2553 14 7 1.4997 -4.9226 0.1384 15 16 1.7170 -6.1505 -0.9513 16 8 3.0328 -5.9489 -1.4486 17 8 1.3796 -7.3255 -0.2270 18 6 0.4901 -5.8275 -2.2477 19 6 -0.9403 -6.2358 -1.8576 20 6 -1.1016 -6.7514 -3.2974 21 6 0.4261 -6.9254 -3.3226 22 6 2.2460 -3.6639 0.0065 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3212 -1.7383 1.2632 25 1 1.0002 -2.5452 2.1411 26 1 -1.0630 -3.9368 2.1151 27 1 -1.0300 -3.9368 0.3351 28 1 1.1045 -5.0775 2.1976 29 1 0.0036 -6.0041 1.1477 30 1 0.5617 -4.8197 -2.6567 31 1 -0.9797 -7.0233 -1.1050 32 1 -1.5867 -5.3906 -1.6216 33 1 -1.4666 -5.9961 -3.9934 34 1 -1.6493 -7.6912 -3.3673 35 1 0.8829 -6.6367 -4.2692 36 1 0.7604 -7.9013 -2.9705 37 1 2.9315 -3.5556 0.8470 38 1 2.8097 -3.6694 -0.9265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717764398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:34 Heat of formation + Delta-G solvation = -60.912658 kcal Electronic energy + Delta-G solvation = -20484.874160 eV Core-core repulsion = 17454.681355 eV Total energy + Delta-G solvation = -3030.192804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.56227 -37.70460 -36.81617 -35.64585 -33.32333 -31.08941 -30.11097 -26.27579 -25.88825 -25.12482 -23.56260 -21.68323 -20.09962 -19.28084 -18.34780 -17.51073 -16.73793 -16.21245 -15.77135 -15.35329 -14.64376 -13.92260 -13.69011 -13.51729 -13.17369 -12.80475 -12.76368 -12.72241 -12.52583 -12.17495 -12.15569 -11.81311 -11.70674 -11.26884 -11.02190 -10.86465 -10.77355 -10.72932 -10.64162 -10.24589 -10.20434 -9.96115 -9.71994 -9.33559 -8.86557 -8.45771 -8.12491 -6.05579 -4.12626 0.59854 2.96797 3.26119 3.34864 3.39398 3.97085 4.11789 4.30843 4.39069 4.57923 4.72673 4.77522 5.20887 5.26242 5.40265 5.49239 5.54204 5.69924 5.70805 5.80436 5.83409 5.91007 6.02467 6.20953 6.27355 6.32790 6.48812 6.61928 6.65746 6.87501 7.03562 7.19744 7.41962 7.67444 7.88822 8.05907 8.36414 8.91367 9.52767 10.99586 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.005923 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.256883 B = 4725.945558 C = 4801.489472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.127 3.873 14 N -0.992 5.992 15 S 2.610 3.390 16 O -0.961 6.961 17 O -0.966 6.966 18 C -0.624 4.624 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.115 4.115 22 C 0.126 3.874 23 H 0.259 0.741 24 H 0.094 0.906 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -11.406 -3.144 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.174 4.174 13 C 0.002 3.998 14 N -0.830 5.830 15 S 2.704 3.296 16 O -0.952 6.952 17 O -0.957 6.957 18 C -0.733 4.733 19 C -0.148 4.148 20 C -0.165 4.165 21 C -0.154 4.154 22 C 0.003 3.997 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.968 -11.980 -3.063 12.716 hybrid contribution -0.040 1.550 -0.267 1.573 sum -3.008 -10.430 -3.330 11.355 Atomic orbital electron populations 1.69882 1.05877 1.26346 1.50634 1.24934 0.94847 0.99072 0.94945 0.86546 0.80257 0.83724 0.77537 1.19700 1.21093 1.21052 1.21168 0.93134 0.90347 1.50776 0.92329 1.18994 0.92958 0.91213 0.94935 0.95353 1.21574 0.99365 0.95330 0.98526 1.22021 0.97627 0.96985 1.00744 1.21358 0.90772 0.98550 0.89130 1.57574 1.54411 1.31712 1.39323 1.04905 0.75589 0.73760 0.75313 1.93558 1.34253 1.85692 1.81673 1.93533 1.85804 1.46870 1.69448 1.32077 1.15126 1.09161 1.16929 1.22582 0.92121 1.01943 0.98194 1.22743 0.95178 1.01677 0.96920 1.22576 0.98693 0.96066 0.98042 1.21798 0.94540 0.82035 1.01370 0.93060 0.88792 0.94582 0.92668 0.92507 0.91803 0.90761 0.82840 0.88540 0.89444 0.89454 0.90815 0.89657 0.89441 0.92072 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.14 11.31 55.43 0.63 -23.52 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.46 8.56 -34.44 -0.29 -13.75 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.70 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.11 -2.40 4.96 -26.69 -0.13 -2.53 16 12 C -0.13 -2.34 6.08 -26.61 -0.16 -2.51 16 13 C 0.13 2.08 6.31 -3.71 -0.02 2.06 16 14 N -0.99 -17.68 3.22 -113.52 -0.37 -18.05 16 15 S 2.61 43.48 5.34 -107.50 -0.57 42.90 16 16 O -0.96 -18.92 16.72 -57.54 -0.96 -19.89 16 17 O -0.97 -17.12 16.04 -57.54 -0.92 -18.04 16 18 C -0.62 -8.37 4.52 -25.92 -0.12 -8.49 16 19 C -0.11 -1.30 7.64 -25.92 -0.20 -1.50 16 20 C -0.13 -1.27 8.08 -25.92 -0.21 -1.48 16 21 C -0.11 -1.28 7.67 -25.92 -0.20 -1.48 16 22 C 0.13 2.59 5.54 -3.71 -0.02 2.57 16 23 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 30 H 0.15 2.08 8.14 -51.93 -0.42 1.65 16 31 H 0.10 1.10 7.53 -51.93 -0.39 0.71 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.52 7.09 -51.93 -0.37 1.15 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -30.20 311.90 -10.23 -40.43 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.05 Total: 0.68 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -1.66 Total: -24.84 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.26 Total: -41.57 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.89 Total: -37.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 43.48 SS G_CDS: -0.57 Total: 42.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.20 -10.23 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717764398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.485 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds