Wall clock time and date at job start Mon Mar 30 2020 01:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48497 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47258 * 299.99847 * 3 2 1 6 6 H 1.48497 * 109.47040 * 59.99858 * 3 2 1 7 7 C 1.37877 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00031 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.52513 * 60.08315 * 9 7 2 11 11 C 1.53046 * 109.49738 * 300.00253 * 9 7 2 12 12 C 1.53039 * 109.52798 * 178.67638 * 11 9 7 13 13 C 1.53195 * 109.31257 * 61.36716 * 12 11 9 14 14 N 1.46919 * 108.77845 * 305.36660 * 13 12 11 15 15 S 1.65596 * 120.63444 * 233.62795 * 14 13 12 16 16 O 1.42098 * 104.28054 * 206.07373 * 15 14 13 17 17 O 1.42101 * 104.27452 * 333.93041 * 15 14 13 18 18 C 1.81398 * 104.44933 * 90.00150 * 15 14 13 19 19 C 1.53786 * 113.61410 * 282.50038 * 18 15 14 20 20 C 1.53779 * 87.07972 * 220.01992 * 19 18 15 21 21 C 1.53772 * 87.08417 * 25.43235 * 20 19 18 22 22 C 1.46931 * 118.73612 * 53.60997 * 14 13 12 23 23 H 0.97009 * 119.99736 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46115 * 58.66091 * 11 9 7 25 25 H 1.09004 * 109.45806 * 298.68975 * 11 9 7 26 26 H 1.08997 * 109.50134 * 181.32407 * 12 11 9 27 27 H 1.09006 * 109.49908 * 301.38992 * 12 11 9 28 28 H 1.08997 * 109.58182 * 65.15696 * 13 12 11 29 29 H 1.09002 * 109.58573 * 185.43694 * 13 12 11 30 30 H 1.08999 * 112.85123 * 53.80419 * 18 15 14 31 31 H 1.09003 * 113.61382 * 334.56380 * 19 18 15 32 32 H 1.08992 * 113.61508 * 105.46864 * 19 18 15 33 33 H 1.09003 * 113.61573 * 270.87971 * 20 19 18 34 34 H 1.09000 * 113.69027 * 139.99513 * 20 19 18 35 35 H 1.08999 * 113.61937 * 220.02002 * 21 20 19 36 36 H 1.09004 * 113.61936 * 89.11978 * 21 20 19 37 37 H 1.08998 * 109.58959 * 66.17523 * 22 14 13 38 38 H 1.09003 * 109.58181 * 186.46006 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6247 -2.5591 -0.8884 11 6 0.3712 -2.5800 1.2515 12 6 -0.4192 -3.8904 1.2368 13 6 0.5568 -5.0710 1.2553 14 7 1.4997 -4.9226 0.1384 15 16 1.7170 -6.1505 -0.9513 16 8 3.0328 -5.9489 -1.4486 17 8 1.3796 -7.3255 -0.2270 18 6 0.4901 -5.8275 -2.2477 19 6 -0.9403 -6.2358 -1.8576 20 6 -1.1016 -6.7514 -3.2974 21 6 0.4261 -6.9254 -3.3226 22 6 2.2460 -3.6639 0.0065 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3212 -1.7383 1.2632 25 1 1.0002 -2.5452 2.1411 26 1 -1.0630 -3.9368 2.1151 27 1 -1.0300 -3.9368 0.3351 28 1 1.1045 -5.0775 2.1976 29 1 0.0036 -6.0041 1.1477 30 1 0.5617 -4.8197 -2.6567 31 1 -0.9797 -7.0233 -1.1050 32 1 -1.5867 -5.3906 -1.6216 33 1 -1.4666 -5.9961 -3.9934 34 1 -1.6493 -7.6912 -3.3673 35 1 0.8829 -6.6367 -4.2692 36 1 0.7604 -7.9013 -2.9705 37 1 2.9315 -3.5556 0.8470 38 1 2.8097 -3.6694 -0.9265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717764398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:33 Heat of formation + Delta-G solvation = -79.868890 kcal Electronic energy + Delta-G solvation = -20485.696164 eV Core-core repulsion = 17454.681355 eV Total energy + Delta-G solvation = -3031.014808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51840 -39.26384 -38.19738 -37.04915 -35.18391 -32.67319 -31.85454 -27.25646 -27.04125 -26.75208 -25.12297 -23.30534 -21.32295 -20.58814 -19.74158 -18.94290 -18.11561 -17.95125 -17.05784 -16.64435 -16.33668 -15.36859 -15.16252 -14.85077 -14.68396 -14.40261 -14.25781 -13.83802 -13.65275 -13.49246 -13.31872 -13.19281 -13.06527 -12.89374 -12.73878 -12.66412 -12.50511 -11.86371 -11.79033 -11.70451 -11.59544 -11.49379 -11.26928 -10.85519 -10.73770 -10.39750 -9.67259 -8.07104 -6.20511 -0.69447 1.40988 1.44525 1.54404 1.62783 2.45107 2.80625 2.96068 3.19986 3.27148 3.52544 3.73028 3.83431 3.86480 4.28143 4.37266 4.53323 4.56476 4.60565 4.62257 4.71724 4.82895 4.90923 4.92711 4.96458 4.99056 5.04691 5.12452 5.32629 5.36096 5.42002 5.56697 5.67653 5.75964 6.00647 6.18291 6.41859 6.90171 7.47206 8.96218 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.005923 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.256883 B = 4725.945558 C = 4801.489472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.039 3.961 10 H 0.008 0.992 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.124 3.876 14 N -0.998 5.998 15 S 2.609 3.391 16 O -0.999 6.999 17 O -0.977 6.977 18 C -0.613 4.613 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.120 4.120 22 C 0.138 3.862 23 H 0.260 0.740 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.152 0.848 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -12.461 -3.668 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.027 0.973 11 C -0.144 4.144 12 C -0.164 4.164 13 C -0.001 4.001 14 N -0.835 5.835 15 S 2.708 3.292 16 O -0.990 6.990 17 O -0.968 6.968 18 C -0.726 4.726 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.159 4.159 22 C 0.013 3.987 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.170 0.830 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.943 -13.048 -3.544 14.084 hybrid contribution 0.240 1.850 -0.145 1.871 sum -3.702 -11.199 -3.690 12.358 Atomic orbital electron populations 1.69995 1.06849 1.26948 1.51155 1.25596 0.95631 1.01886 0.94814 0.85658 0.79137 0.80229 0.77521 1.19504 1.20762 1.20706 1.21530 0.93158 0.92066 1.50767 0.93010 1.18923 0.93226 0.91233 0.94690 0.97342 1.21404 0.98772 0.96865 0.97320 1.21916 0.97577 0.94798 1.02124 1.21503 0.90474 0.99114 0.88961 1.57532 1.54675 1.30523 1.40776 1.04867 0.75582 0.73130 0.75601 1.93505 1.37369 1.85978 1.82110 1.93508 1.85939 1.47049 1.70295 1.31957 1.14502 1.10132 1.16054 1.22748 0.90396 1.02351 0.99853 1.22750 0.94293 1.02966 0.95455 1.22799 1.00038 0.95459 0.97639 1.21435 0.93894 0.82499 1.00882 0.93053 0.91798 0.95441 0.90245 0.92115 0.91389 0.88131 0.83042 0.87845 0.89256 0.88651 0.88492 0.88342 0.88522 0.92709 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.11 11.31 21.45 0.24 -49.86 16 2 C 0.02 1.07 5.30 84.66 0.45 1.52 16 3 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -28.59 8.56 25.60 0.22 -28.37 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 10 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 11 C -0.11 -4.64 4.96 30.62 0.15 -4.49 16 12 C -0.13 -4.19 6.08 30.67 0.19 -4.00 16 13 C 0.12 3.86 6.31 86.36 0.54 4.40 16 14 N -1.00 -35.07 3.22 -513.07 -1.65 -36.72 16 15 S 2.61 84.76 5.34 -56.49 -0.30 84.46 16 16 O -1.00 -39.50 16.72 -127.65 -2.13 -41.64 16 17 O -0.98 -33.12 16.04 -127.65 -2.05 -35.16 16 18 C -0.61 -15.37 4.52 31.12 0.14 -15.23 16 19 C -0.12 -2.39 7.64 31.12 0.24 -2.15 16 20 C -0.12 -1.92 8.08 31.12 0.25 -1.66 16 21 C -0.12 -2.35 7.67 31.12 0.24 -2.11 16 22 C 0.14 5.74 5.54 86.36 0.48 6.22 16 23 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 24 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.62 7.10 -2.39 -0.02 2.60 16 30 H 0.15 3.94 8.14 -2.39 -0.02 3.92 16 31 H 0.10 2.03 7.53 -2.39 -0.02 2.01 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.73 8.10 -2.38 -0.02 1.71 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.90 7.09 -2.39 -0.02 2.89 16 Total: -1.00 -64.88 311.90 0.03 -64.85 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.03 Total: 13.47 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.87 Total: -44.06 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -1.41 Total: -86.58 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -4.18 Total: -76.80 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 84.76 SS G_CDS: -0.30 Total: 84.46 kcal Total: -64.88 0.03 -64.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717764398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.021 kcal (2) G-P(sol) polarization free energy of solvation -64.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds