Wall clock time and date at job start Mon Mar 30 2020 01:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00062 * 2 1 4 4 H 1.48496 * 109.47372 * 270.00291 * 3 2 1 5 5 H 1.48507 * 109.47111 * 30.00440 * 3 2 1 6 6 H 1.48501 * 109.46988 * 149.99962 * 3 2 1 7 7 C 1.37875 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99650 * 175.16080 * 7 2 1 9 9 C 1.50694 * 120.00201 * 355.15392 * 7 2 1 10 10 H 1.08996 * 109.50020 * 35.15212 * 9 7 2 11 11 C 1.53042 * 109.50020 * 155.21551 * 9 7 2 12 12 C 1.53033 * 109.54190 * 181.31368 * 11 9 7 13 13 C 1.53190 * 109.31589 * 298.63564 * 12 11 9 14 14 N 1.46931 * 108.77444 * 54.63214 * 13 12 11 15 15 S 1.65596 * 120.63038 * 126.41401 * 14 13 12 16 16 O 1.42096 * 104.27810 * 206.06884 * 15 14 13 17 17 O 1.42106 * 104.28012 * 333.93216 * 15 14 13 18 18 C 1.81401 * 104.45016 * 90.00019 * 15 14 13 19 19 C 1.53785 * 113.61232 * 284.13697 * 18 15 14 20 20 C 1.53956 * 87.01942 * 220.04534 * 19 18 15 21 21 C 1.53776 * 113.61679 * 186.53156 * 18 15 14 22 22 C 1.46925 * 118.73900 * 306.39540 * 14 13 12 23 23 H 0.96997 * 120.00211 * 185.18253 * 1 2 3 24 24 H 1.09000 * 109.45998 * 301.34015 * 11 9 7 25 25 H 1.09000 * 109.45784 * 61.30967 * 11 9 7 26 26 H 1.09007 * 109.49520 * 58.58695 * 12 11 9 27 27 H 1.08999 * 109.50343 * 178.64842 * 12 11 9 28 28 H 1.09005 * 109.59005 * 174.41760 * 13 12 11 29 29 H 1.08999 * 109.58626 * 294.70401 * 13 12 11 30 30 H 1.08997 * 112.85210 * 55.33128 * 18 15 14 31 31 H 1.08992 * 113.61639 * 334.56244 * 19 18 15 32 32 H 1.09007 * 113.61248 * 105.47210 * 19 18 15 33 33 H 1.08997 * 113.53841 * 270.81172 * 20 19 18 34 34 H 1.08993 * 113.74234 * 139.94206 * 20 19 18 35 35 H 1.08998 * 113.61179 * 254.52935 * 21 18 15 36 36 H 1.09000 * 113.61837 * 25.34441 * 21 18 15 37 37 H 1.09004 * 109.58358 * 293.81646 * 22 14 13 38 38 H 1.08994 * 109.58939 * 173.39991 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1957 -0.0794 9 6 1.2550 -2.4968 0.1091 10 1 0.3046 -2.4153 -0.4182 11 6 2.0890 -3.6198 -0.5119 12 6 1.3148 -4.9374 -0.4305 13 6 1.0565 -5.2832 1.0393 14 7 0.3822 -4.1465 1.6812 15 16 -1.0422 -4.3619 2.4979 16 8 -1.6816 -3.0949 2.4275 17 8 -1.6223 -5.5099 1.8939 18 6 -0.5366 -4.7259 4.2015 19 6 -0.0018 -6.1549 4.3933 20 6 -0.7657 -6.1753 5.7298 21 6 -1.7050 -5.1217 5.1196 22 6 0.9960 -2.8150 1.5851 23 1 -0.4850 -0.8366 0.0759 24 1 2.2956 -3.3839 -1.5558 25 1 3.0289 -3.7170 0.0313 26 1 0.3634 -4.8332 -0.9523 27 1 1.8990 -5.7320 -0.8944 28 1 0.4212 -6.1669 1.1006 29 1 2.0043 -5.4791 1.5407 30 1 0.1101 -3.9572 4.6246 31 1 -0.3839 -6.8661 3.6612 32 1 1.0812 -6.2042 4.5076 33 1 -0.1808 -5.8039 6.5713 34 1 -1.2548 -7.1261 5.9413 35 1 -1.9952 -4.3379 5.8194 36 1 -2.5543 -5.5485 4.5862 37 1 1.9391 -2.8072 2.1316 38 1 0.3211 -2.0702 2.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717764400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:35 Heat of formation + Delta-G solvation = -63.546186 kcal Electronic energy + Delta-G solvation = -20434.710806 eV Core-core repulsion = 17404.403803 eV Total energy + Delta-G solvation = -3030.307003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.64502 -37.83300 -36.74888 -35.54118 -33.41279 -31.54018 -29.70881 -26.35243 -26.00051 -24.64300 -23.70022 -21.88466 -20.12571 -19.65832 -18.38449 -17.38357 -16.93717 -16.40490 -15.88232 -15.30379 -14.11164 -13.88803 -13.73029 -13.72252 -13.36709 -13.28214 -12.90715 -12.84297 -12.54340 -12.21358 -11.97085 -11.71307 -11.45308 -11.39490 -11.21565 -10.89210 -10.81063 -10.78039 -10.57245 -10.30377 -10.12543 -10.02920 -9.94157 -9.20681 -8.76811 -8.29145 -8.14409 -6.32102 -4.05898 0.59182 2.99201 3.44543 3.47820 3.63877 3.93719 4.07125 4.29236 4.45348 4.54014 4.62146 4.77618 5.19303 5.32302 5.35434 5.39178 5.42392 5.50253 5.60982 5.63000 5.65754 5.79049 5.89550 6.00726 6.07884 6.22501 6.36095 6.49968 6.60475 6.69286 6.80874 7.04369 7.13705 7.38934 7.59792 8.24572 8.45652 8.90182 9.67057 11.06180 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.006203 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.788422 B = 4512.758242 C = 4996.103721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.597 4.597 8 H 0.051 0.949 9 C 0.023 3.977 10 H 0.036 0.964 11 C -0.100 4.100 12 C -0.132 4.132 13 C 0.126 3.874 14 N -0.993 5.993 15 S 2.600 3.400 16 O -0.946 6.946 17 O -0.966 6.966 18 C -0.630 4.630 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.115 4.115 22 C 0.123 3.877 23 H 0.277 0.723 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 -12.815 9.523 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.186 4.186 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.069 0.931 9 C 0.003 3.997 10 H 0.054 0.946 11 C -0.138 4.138 12 C -0.171 4.171 13 C 0.000 4.000 14 N -0.832 5.832 15 S 2.694 3.306 16 O -0.936 6.936 17 O -0.956 6.956 18 C -0.738 4.738 19 C -0.148 4.148 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.001 4.001 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.184 -11.111 9.122 14.377 hybrid contribution 0.798 -1.580 0.600 1.869 sum 0.982 -12.691 9.722 16.017 Atomic orbital electron populations 1.70716 1.06818 1.31807 1.44485 1.25874 0.96532 1.02679 0.93531 0.83551 0.74631 0.75258 0.76791 1.21483 1.21010 1.21473 1.21903 0.94557 0.91225 1.55969 0.93052 1.19127 0.96645 0.93678 0.90280 0.94578 1.21497 0.98102 0.93670 1.00564 1.21919 1.01034 0.98867 0.95307 1.21302 0.96927 0.87742 0.94034 1.57804 1.43445 1.15791 1.66120 1.05362 0.74508 0.74172 0.76516 1.93625 1.73145 1.40971 1.85901 1.93522 1.75780 1.52908 1.73384 1.32142 1.09134 1.07131 1.25427 1.22600 1.01421 0.91806 0.99011 1.22776 0.97766 0.99086 0.96906 1.22565 0.94702 0.99884 0.98200 1.22199 0.96579 0.79117 1.02210 0.91117 0.92833 0.93381 0.92053 0.92171 0.90185 0.92298 0.83385 0.88450 0.89876 0.89591 0.90712 0.89629 0.89239 0.92916 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.63 55.43 0.76 -26.90 16 2 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 3 Si 1.07 24.95 29.91 -169.99 -5.08 19.87 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.60 -16.27 8.32 -34.44 -0.29 -16.55 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.02 0.57 1.98 -91.65 -0.18 0.39 16 10 H 0.04 1.00 6.67 -51.93 -0.35 0.65 16 11 C -0.10 -2.05 5.14 -26.69 -0.14 -2.19 16 12 C -0.13 -2.27 6.08 -26.62 -0.16 -2.43 16 13 C 0.13 1.99 6.43 -3.71 -0.02 1.97 16 14 N -0.99 -18.30 3.22 -113.52 -0.37 -18.66 16 15 S 2.60 46.07 5.37 -107.50 -0.58 45.49 16 16 O -0.95 -21.16 16.59 -57.54 -0.95 -22.12 16 17 O -0.97 -18.16 15.95 -57.54 -0.92 -19.07 16 18 C -0.63 -8.05 4.51 -25.92 -0.12 -8.16 16 19 C -0.11 -1.15 7.66 -25.82 -0.20 -1.35 16 20 C -0.13 -1.15 8.09 -25.83 -0.21 -1.36 16 21 C -0.11 -1.26 7.67 -25.92 -0.20 -1.46 16 22 C 0.12 2.70 5.70 -3.71 -0.02 2.67 16 23 H 0.28 8.63 6.66 -40.82 -0.27 8.36 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.15 6.86 -51.93 -0.36 0.79 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.15 1.76 8.14 -51.93 -0.42 1.33 16 31 H 0.10 1.02 7.57 -51.93 -0.39 0.63 16 32 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 2.01 6.86 -51.93 -0.36 1.66 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -33.50 313.10 -10.06 -43.55 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.00 Total: 1.14 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -1.63 Total: -28.01 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.39 Total: -45.56 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.87 Total: -41.19 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 16 Polarization: 46.07 SS G_CDS: -0.58 Total: 45.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.50 -10.06 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717764400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.992 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds