Wall clock time and date at job start Mon Mar 30 2020 01:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00062 * 2 1 4 4 H 1.48496 * 109.47372 * 270.00291 * 3 2 1 5 5 H 1.48507 * 109.47111 * 30.00440 * 3 2 1 6 6 H 1.48501 * 109.46988 * 149.99962 * 3 2 1 7 7 C 1.37875 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99650 * 175.16080 * 7 2 1 9 9 C 1.50694 * 120.00201 * 355.15392 * 7 2 1 10 10 H 1.08996 * 109.50020 * 35.15212 * 9 7 2 11 11 C 1.53042 * 109.50020 * 155.21551 * 9 7 2 12 12 C 1.53033 * 109.54190 * 181.31368 * 11 9 7 13 13 C 1.53190 * 109.31589 * 298.63564 * 12 11 9 14 14 N 1.46931 * 108.77444 * 54.63214 * 13 12 11 15 15 S 1.65596 * 120.63038 * 126.41401 * 14 13 12 16 16 O 1.42096 * 104.27810 * 206.06884 * 15 14 13 17 17 O 1.42106 * 104.28012 * 333.93216 * 15 14 13 18 18 C 1.81401 * 104.45016 * 90.00019 * 15 14 13 19 19 C 1.53785 * 113.61232 * 284.13697 * 18 15 14 20 20 C 1.53956 * 87.01942 * 220.04534 * 19 18 15 21 21 C 1.53776 * 113.61679 * 186.53156 * 18 15 14 22 22 C 1.46925 * 118.73900 * 306.39540 * 14 13 12 23 23 H 0.96997 * 120.00211 * 185.18253 * 1 2 3 24 24 H 1.09000 * 109.45998 * 301.34015 * 11 9 7 25 25 H 1.09000 * 109.45784 * 61.30967 * 11 9 7 26 26 H 1.09007 * 109.49520 * 58.58695 * 12 11 9 27 27 H 1.08999 * 109.50343 * 178.64842 * 12 11 9 28 28 H 1.09005 * 109.59005 * 174.41760 * 13 12 11 29 29 H 1.08999 * 109.58626 * 294.70401 * 13 12 11 30 30 H 1.08997 * 112.85210 * 55.33128 * 18 15 14 31 31 H 1.08992 * 113.61639 * 334.56244 * 19 18 15 32 32 H 1.09007 * 113.61248 * 105.47210 * 19 18 15 33 33 H 1.08997 * 113.53841 * 270.81172 * 20 19 18 34 34 H 1.08993 * 113.74234 * 139.94206 * 20 19 18 35 35 H 1.08998 * 113.61179 * 254.52935 * 21 18 15 36 36 H 1.09000 * 113.61837 * 25.34441 * 21 18 15 37 37 H 1.09004 * 109.58358 * 293.81646 * 22 14 13 38 38 H 1.08994 * 109.58939 * 173.39991 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1957 -0.0794 9 6 1.2550 -2.4968 0.1091 10 1 0.3046 -2.4153 -0.4182 11 6 2.0890 -3.6198 -0.5119 12 6 1.3148 -4.9374 -0.4305 13 6 1.0565 -5.2832 1.0393 14 7 0.3822 -4.1465 1.6812 15 16 -1.0422 -4.3619 2.4979 16 8 -1.6816 -3.0949 2.4275 17 8 -1.6223 -5.5099 1.8939 18 6 -0.5366 -4.7259 4.2015 19 6 -0.0018 -6.1549 4.3933 20 6 -0.7657 -6.1753 5.7298 21 6 -1.7050 -5.1217 5.1196 22 6 0.9960 -2.8150 1.5851 23 1 -0.4850 -0.8366 0.0759 24 1 2.2956 -3.3839 -1.5558 25 1 3.0289 -3.7170 0.0313 26 1 0.3634 -4.8332 -0.9523 27 1 1.8990 -5.7320 -0.8944 28 1 0.4212 -6.1669 1.1006 29 1 2.0043 -5.4791 1.5407 30 1 0.1101 -3.9572 4.6246 31 1 -0.3839 -6.8661 3.6612 32 1 1.0812 -6.2042 4.5076 33 1 -0.1808 -5.8039 6.5713 34 1 -1.2548 -7.1261 5.9413 35 1 -1.9952 -4.3379 5.8194 36 1 -2.5543 -5.5485 4.5862 37 1 1.9391 -2.8072 2.1316 38 1 0.3211 -2.0702 2.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717764400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:35 Heat of formation + Delta-G solvation = -86.917498 kcal Electronic energy + Delta-G solvation = -20435.724262 eV Core-core repulsion = 17404.403803 eV Total energy + Delta-G solvation = -3031.320459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53824 -39.44214 -38.24237 -37.06294 -35.36888 -33.13699 -31.48320 -27.29784 -26.86185 -26.60653 -25.25286 -23.60522 -21.46974 -20.86812 -19.73981 -19.03336 -18.46205 -17.99827 -17.09878 -16.43114 -15.78159 -15.63413 -15.43877 -15.19099 -14.82838 -14.60673 -14.38862 -13.74355 -13.59180 -13.52074 -13.31118 -13.24078 -13.09917 -13.01620 -12.87813 -12.66629 -12.25726 -11.91789 -11.84763 -11.65942 -11.61254 -11.56349 -11.21669 -11.00600 -10.72042 -10.38272 -9.72920 -8.57891 -6.31699 -0.76042 1.53707 1.58900 1.64565 1.80326 2.60294 2.83429 2.91396 3.20206 3.24676 3.47215 3.68811 3.77923 3.82244 4.10197 4.19227 4.41164 4.49029 4.51381 4.53938 4.66782 4.70578 4.75748 4.87553 4.90940 4.95418 4.97119 5.01986 5.08887 5.17626 5.32309 5.33610 5.56894 5.65777 5.70149 6.14988 6.24719 6.65365 7.51740 8.79441 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.006203 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.788422 B = 4512.758242 C = 4996.103721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.037 4.037 3 Si 1.117 2.883 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.601 4.601 8 H 0.057 0.943 9 C 0.011 3.989 10 H -0.013 1.013 11 C -0.094 4.094 12 C -0.131 4.131 13 C 0.119 3.881 14 N -1.000 6.000 15 S 2.587 3.413 16 O -1.010 7.010 17 O -0.985 6.985 18 C -0.602 4.602 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.129 4.129 22 C 0.141 3.859 23 H 0.256 0.744 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -14.996 11.788 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.938 3.062 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.640 4.640 8 H 0.075 0.925 9 C -0.010 4.010 10 H 0.005 0.995 11 C -0.132 4.132 12 C -0.170 4.170 13 C -0.005 4.005 14 N -0.838 5.838 15 S 2.689 3.311 16 O -1.001 7.001 17 O -0.975 6.975 18 C -0.717 4.717 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.168 4.168 22 C 0.015 3.985 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.181 0.819 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.578 -13.305 11.296 17.643 hybrid contribution 0.024 -1.043 -0.053 1.045 sum 2.602 -14.348 11.244 18.414 Atomic orbital electron populations 1.70861 1.08236 1.30543 1.48155 1.27381 0.96390 1.06847 0.92844 0.82963 0.74396 0.71200 0.77597 1.20235 1.21531 1.18565 1.22309 0.94898 0.92457 1.54354 0.92503 1.19181 0.94829 0.94768 0.92188 0.99466 1.21382 0.98428 0.93850 0.99557 1.21925 0.99899 0.98255 0.96904 1.21614 0.98859 0.87105 0.92959 1.57593 1.43117 1.15065 1.68036 1.05451 0.74012 0.72743 0.78933 1.93550 1.74881 1.43953 1.87691 1.93483 1.76194 1.52474 1.75373 1.31937 1.11020 1.09573 1.19125 1.22815 1.03203 0.89089 0.99852 1.22791 0.96673 0.99193 0.96428 1.22848 0.94576 1.01327 0.98053 1.21578 0.96641 0.80360 0.99892 0.93342 0.94069 0.91538 0.94636 0.88103 0.88419 0.88540 0.81879 0.88398 0.87496 0.87720 0.88682 0.88409 0.89373 0.90871 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.00 13.63 21.45 0.29 -60.71 16 2 C -0.04 -2.14 5.45 84.65 0.46 -1.67 16 3 Si 1.12 50.80 29.91 68.60 2.05 52.85 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.60 -33.50 8.32 25.60 0.21 -33.29 16 8 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.55 1.98 -11.46 -0.02 0.53 16 10 H -0.01 -0.78 6.67 -2.39 -0.02 -0.80 16 11 C -0.09 -3.82 5.14 30.62 0.16 -3.66 16 12 C -0.13 -4.33 6.08 30.67 0.19 -4.14 16 13 C 0.12 3.48 6.43 86.36 0.56 4.04 16 14 N -1.00 -36.69 3.22 -513.06 -1.65 -38.34 16 15 S 2.59 92.94 5.37 -56.49 -0.30 92.64 16 16 O -1.01 -48.32 16.59 -127.65 -2.12 -50.44 16 17 O -0.98 -37.24 15.95 -127.65 -2.04 -39.28 16 18 C -0.60 -13.87 4.51 31.12 0.14 -13.73 16 19 C -0.11 -1.84 7.66 31.18 0.24 -1.60 16 20 C -0.11 -1.49 8.09 31.18 0.25 -1.24 16 21 C -0.13 -2.47 7.67 31.12 0.24 -2.23 16 22 C 0.14 6.31 5.70 86.36 0.49 6.80 16 23 H 0.26 17.34 6.66 -92.71 -0.62 16.72 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.10 2.54 6.86 -2.38 -0.02 2.53 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.16 3.38 8.14 -2.39 -0.02 3.37 16 31 H 0.10 1.67 7.57 -2.39 -0.02 1.66 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.05 2.40 6.86 -2.39 -0.02 2.38 16 Total: -1.00 -79.07 313.10 0.33 -78.74 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.18 Total: 14.75 kcal Atomic # 6 Polarization: -53.12 SS G_CDS: 2.91 Total: -50.20 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -1.36 Total: -99.05 kcal Atomic # 8 Polarization: -85.56 SS G_CDS: -4.15 Total: -89.72 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Atomic # 16 Polarization: 92.94 SS G_CDS: -0.30 Total: 92.64 kcal Total: -79.07 0.33 -78.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717764400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.180 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds