Wall clock time and date at job start Mon Mar 30 2020 01:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38834 * 119.66774 * 2 1 4 4 C 1.36628 * 120.53209 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.76327 * 359.97438 * 4 3 2 6 6 C 1.46482 * 134.03481 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.50522 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47058 * 84.99511 * 7 6 5 9 9 C 1.50700 * 109.47103 * 180.02562 * 8 7 6 10 10 O 1.21208 * 120.00289 * 0.02562 * 9 8 7 11 11 O 1.34320 * 120.00019 * 179.97438 * 9 8 7 12 12 C 1.34919 * 116.99998 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00014 * 359.97438 * 12 11 9 14 14 C 1.38752 * 120.00150 * 180.02562 * 12 11 9 15 15 N 1.31435 * 120.00419 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99752 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47312 * 90.00184 * 16 14 12 18 18 H 1.48504 * 109.47238 * 210.00086 * 16 14 12 19 19 H 1.48498 * 109.47109 * 330.00123 * 16 14 12 20 20 C 1.34241 * 106.99890 * 180.02562 * 6 5 4 21 21 N 1.36833 * 109.93022 * 0.02562 * 20 6 5 22 22 H 0.97000 * 125.06652 * 179.97438 * 21 20 6 23 23 C 1.37688 * 109.87243 * 0.02562 * 21 20 6 24 24 C 1.37747 * 119.66772 * 180.16408 * 2 1 3 25 25 H 1.09002 * 109.46470 * 90.00378 * 1 2 3 26 26 H 1.08999 * 109.47076 * 210.00108 * 1 2 3 27 27 H 1.08992 * 109.47445 * 330.00428 * 1 2 3 28 28 H 1.07999 * 119.73036 * 359.96944 * 3 2 1 29 29 H 1.07997 * 120.11684 * 179.97438 * 4 3 2 30 30 H 1.08991 * 109.47667 * 204.99791 * 7 6 5 31 31 H 1.09003 * 109.47274 * 325.00323 * 7 6 5 32 32 H 1.09004 * 109.47560 * 300.00204 * 8 7 6 33 33 H 1.09002 * 109.47136 * 60.00475 * 8 7 6 34 34 H 0.96998 * 120.00842 * 179.97438 * 15 14 12 35 35 H 1.08002 * 125.03847 * 180.02562 * 20 6 5 36 36 H 1.08001 * 120.11380 * 359.83731 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2269 0.0005 5 6 4.2717 0.0254 0.0016 6 6 5.6966 -0.3142 0.0019 7 6 6.8495 0.6562 0.0016 8 6 7.1584 1.0816 1.4385 9 6 8.3110 2.0525 1.4381 10 8 8.8332 2.3729 0.3923 11 8 8.7589 2.5636 2.5967 12 6 9.7937 3.4265 2.5261 13 1 10.2236 3.6769 1.5674 14 6 10.3063 3.9914 3.6851 15 7 11.3147 4.8317 3.6164 16 14 9.5632 3.5578 5.3432 17 1 10.2640 2.3756 5.9058 18 1 9.7131 4.7091 6.2691 19 1 8.1218 3.2440 5.1728 20 6 5.7807 -1.6540 0.0026 21 7 4.5260 -2.2001 0.0021 22 1 4.3319 -3.1505 0.0020 23 6 3.5801 -1.1996 0.0005 24 6 2.1888 -1.1969 -0.0034 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5137 28 1 1.6444 2.1359 -0.0005 29 1 4.0881 2.1692 0.0001 30 1 7.7273 0.1775 -0.4323 31 1 6.5854 1.5340 -0.5882 32 1 6.2806 1.5604 1.8725 33 1 7.4225 0.2039 2.0284 34 1 11.6728 5.2269 4.4266 35 1 6.7021 -2.2174 0.0033 36 1 1.6453 -2.1301 -0.0034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745756841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:52 Heat of formation + Delta-G solvation = -37.806088 kcal Electronic energy + Delta-G solvation = -19636.250232 eV Core-core repulsion = 16471.615452 eV Total energy + Delta-G solvation = -3164.634780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.32200 -39.09509 -37.45803 -35.57305 -33.81716 -32.24226 -32.01152 -30.16791 -29.09812 -26.42258 -25.68873 -23.72004 -22.82336 -20.98486 -19.76410 -19.10577 -17.89840 -17.79389 -16.51859 -16.29534 -15.32421 -15.09460 -14.90841 -14.57511 -14.27367 -13.86210 -13.79661 -13.50791 -13.38521 -12.68949 -12.42902 -12.28776 -12.22414 -11.99362 -11.74061 -11.52409 -11.30690 -11.16705 -10.89392 -10.54080 -10.39466 -10.29036 -9.64563 -9.53737 -9.05418 -8.61837 -8.18344 -7.62368 -6.30645 -4.05909 1.07391 1.57825 2.63082 3.05138 3.20295 3.28524 3.41594 3.50403 3.83083 4.27676 4.33742 4.63403 4.77494 4.83201 5.02529 5.15755 5.17518 5.28717 5.34731 5.41685 5.48941 5.52757 5.62032 5.72623 5.80148 5.87248 5.99178 6.03029 6.33135 6.44156 6.53754 6.55064 6.58911 6.72323 6.80886 7.13651 7.46485 7.82689 8.10574 8.70771 9.08782 9.78086 10.78249 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.003664 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.912287 B = 7640.521864 C = 8044.041979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.149 4.149 4 C -0.061 4.061 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.030 4.030 8 C -0.098 4.098 9 C 0.409 3.591 10 O -0.542 6.542 11 O -0.256 6.256 12 C -0.381 4.381 13 H 0.109 0.891 14 C 0.064 3.936 15 N -0.878 5.878 16 Si 0.904 3.096 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.260 1.260 20 C 0.047 3.953 21 N -0.598 5.598 22 H 0.413 0.587 23 C 0.099 3.901 24 C -0.137 4.137 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.278 0.722 35 H 0.171 0.829 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.998 -14.561 -5.561 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.110 4.110 6 C -0.164 4.164 7 C -0.069 4.069 8 C -0.136 4.136 9 C 0.255 3.745 10 O -0.437 6.437 11 O -0.164 6.164 12 C -0.456 4.456 13 H 0.126 0.874 14 C -0.139 4.139 15 N -0.518 5.518 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.078 4.078 21 N -0.201 5.201 22 H 0.250 0.750 23 C -0.008 4.008 24 C -0.158 4.158 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.699 -14.468 -5.700 25.096 hybrid contribution -0.144 -0.572 0.807 0.999 sum -19.843 -15.040 -4.893 25.375 Atomic orbital electron populations 1.20753 0.91237 1.02600 1.02114 1.19521 0.95576 0.92333 0.99578 1.20515 0.93932 0.97279 1.05102 1.20363 0.93587 0.96778 0.97251 1.19128 0.92722 0.92474 1.06675 1.20346 0.92542 0.93138 1.10380 1.19667 0.94369 0.97432 0.95383 1.21125 0.95899 0.98002 0.98577 1.23127 0.85597 0.83049 0.82723 1.90589 1.59144 1.60915 1.33058 1.83538 1.46206 1.53334 1.33370 1.20654 1.07315 1.20159 0.97513 0.87389 1.24542 0.95368 0.95088 0.98880 1.69607 1.23610 1.28562 1.30041 0.86229 0.80760 0.78082 0.81941 1.19953 1.20839 1.18383 1.21658 0.87546 0.93772 1.04871 1.41689 1.04685 1.07784 1.65916 0.75026 1.18216 0.90666 0.88112 1.03839 1.19782 0.89844 0.97981 1.08146 0.91350 0.91868 0.91461 0.86126 0.85733 0.90371 0.90333 0.89107 0.89190 0.91152 0.81212 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.07 -0.71 5.88 -104.58 -0.61 -1.33 16 3 C -0.15 -1.68 9.62 -39.94 -0.38 -2.07 16 4 C -0.06 -0.79 10.05 -39.64 -0.40 -1.19 16 5 C -0.11 -1.44 6.35 -105.14 -0.67 -2.11 16 6 C -0.16 -2.11 5.57 -102.72 -0.57 -2.68 16 7 C -0.03 -0.46 5.04 -27.88 -0.14 -0.61 16 8 C -0.10 -1.68 5.79 -27.88 -0.16 -1.84 16 9 C 0.41 9.71 7.91 36.01 0.28 10.00 16 10 O -0.54 -14.42 15.22 -19.05 -0.29 -14.71 16 11 O -0.26 -6.91 8.58 -20.72 -0.18 -7.09 16 12 C -0.38 -11.57 10.10 30.92 0.31 -11.26 16 13 H 0.11 3.61 7.09 -52.48 -0.37 3.23 16 14 C 0.06 1.88 5.49 -17.53 -0.10 1.79 16 15 N -0.88 -26.54 13.96 55.48 0.77 -25.76 16 16 Si 0.90 21.87 28.62 -169.99 -4.86 17.01 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.05 0.50 11.73 -16.73 -0.20 0.31 16 21 N -0.60 -5.82 6.07 -10.65 -0.06 -5.89 16 22 H 0.41 2.61 8.96 -40.82 -0.37 2.25 16 23 C 0.10 1.18 7.28 -83.98 -0.61 0.57 16 24 C -0.14 -1.44 9.71 -39.43 -0.38 -1.82 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.28 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -34.99 317.64 -7.62 -42.61 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.51 Total: 1.73 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.27 Total: -12.68 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.71 Total: -31.65 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.47 Total: -21.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.99 -7.62 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745756841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.805 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds