Wall clock time and date at job start Mon Mar 30 2020 01:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47153 * 88.23744 * 3 2 1 5 5 C 1.53003 * 109.46828 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46952 * 179.97438 * 5 4 3 7 7 O 1.45196 * 109.47200 * 179.97438 * 6 5 4 8 8 C 1.34780 * 117.00399 * 180.02562 * 7 6 5 9 9 O 1.21505 * 119.99405 * 0.02562 * 8 7 6 10 10 C 1.47501 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.40072 * 119.90126 * 179.97438 * 10 8 7 12 12 C 1.36300 * 120.10122 * 180.25903 * 11 10 8 13 13 C 1.40903 * 119.89735 * 359.51953 * 12 11 10 14 14 C 1.41086 * 120.09946 * 180.23584 * 13 12 11 15 15 H 1.08001 * 120.00081 * 204.81479 * 14 13 12 16 16 C 1.40248 * 120.00090 * 24.80544 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73033 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73090 * 16 14 13 19 19 H 1.48494 * 109.47173 * 60.00085 * 18 16 14 20 20 H 1.48498 * 109.47155 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47158 * 300.00145 * 18 16 14 22 22 C 1.40902 * 119.79905 * 0.50143 * 13 12 11 23 23 C 1.36295 * 119.90197 * 359.73140 * 22 13 12 24 24 H 1.09003 * 109.46949 * 328.23196 * 3 2 1 25 25 H 1.09002 * 109.46904 * 208.23495 * 3 2 1 26 26 H 1.08989 * 109.47605 * 59.99844 * 4 3 2 27 27 H 1.08998 * 109.46783 * 299.99241 * 4 3 2 28 28 H 1.09003 * 109.47460 * 59.99922 * 5 4 3 29 29 H 1.09002 * 109.47147 * 299.99700 * 5 4 3 30 30 H 1.09003 * 109.47228 * 60.00149 * 6 5 4 31 31 H 1.09002 * 109.47300 * 300.00035 * 6 5 4 32 32 H 1.08002 * 119.94620 * 359.97438 * 11 10 8 33 33 H 1.07995 * 120.04815 * 179.75273 * 12 11 10 34 34 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.04814 * 179.70677 * 22 13 12 36 36 H 1.07997 * 119.95010 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0435 -1.4418 5 6 4.6480 -0.0421 -1.4417 6 6 5.1581 -0.0869 -2.8835 7 8 6.6101 -0.0851 -2.8835 8 6 7.2221 -0.1216 -4.0838 9 8 6.5603 -0.1536 -5.1023 10 6 8.6951 -0.1215 -4.1610 11 6 9.3289 -0.1600 -5.4095 12 6 10.6898 -0.1654 -5.4854 13 6 11.4591 -0.1220 -4.3058 14 6 12.8681 -0.1223 -4.3795 15 1 13.4524 -0.4844 -3.5465 16 6 13.5099 0.3472 -5.5347 17 7 12.8581 1.0922 -6.3871 18 14 15.2970 -0.0927 -5.8546 19 1 15.4353 -1.5686 -5.9421 20 1 15.7372 0.5228 -7.1322 21 1 16.1391 0.4183 -4.7434 22 6 10.8172 -0.0838 -3.0521 23 6 9.4559 -0.0835 -2.9855 24 1 2.9717 -0.8729 0.5411 25 1 2.9709 0.9062 0.4862 26 1 2.7544 0.8300 -1.9828 27 1 2.7552 -0.9491 -1.9279 28 1 5.0122 -0.9155 -0.9006 29 1 5.0106 0.8636 -0.9556 30 1 4.7941 0.7862 -3.4250 31 1 4.7956 -0.9929 -3.3692 32 1 8.7383 -0.1901 -6.3132 33 1 11.1775 -0.1992 -6.4483 34 1 13.3020 1.4173 -7.1859 35 1 11.4030 -0.0552 -2.1452 36 1 8.9630 -0.0546 -2.0250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758684761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:46 Heat of formation + Delta-G solvation = -69.699627 kcal Electronic energy + Delta-G solvation = -18916.787439 eV Core-core repulsion = 15750.769652 eV Total energy + Delta-G solvation = -3166.017787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60581 -37.63065 -37.32572 -35.98178 -34.75948 -33.98247 -30.61377 -30.02416 -29.52484 -26.32637 -24.61706 -22.25138 -21.48584 -21.05518 -19.83120 -17.81460 -17.60808 -16.92761 -16.51135 -16.04597 -15.50015 -15.42414 -14.36714 -14.07338 -14.00693 -13.60158 -13.43618 -13.16830 -12.77963 -12.74222 -12.25145 -12.12711 -12.01987 -11.81236 -11.72426 -11.45111 -11.28699 -11.19199 -11.06083 -10.98885 -10.70359 -10.16500 -10.11167 -9.60504 -9.47589 -9.40800 -7.77582 -7.66803 -7.11540 -4.70100 2.04203 2.41993 2.47837 2.86137 2.90893 2.93792 3.00638 3.27797 3.61715 3.69026 3.72202 4.44843 4.53868 4.55539 4.90119 5.01475 5.17918 5.23306 5.43989 5.44476 5.50024 5.62258 5.88422 5.94118 6.08263 6.20988 6.22959 6.72104 6.78746 6.95986 7.03260 7.11468 7.24622 7.38487 7.58807 7.76396 7.84645 7.98442 8.33562 8.53944 8.66624 8.73646 9.79749 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.060343 B = 0.002568 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.905317 B =10898.911510 C =11260.321571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.208 3.792 3 C -0.025 4.025 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.066 3.934 7 O -0.362 6.362 8 C 0.514 3.486 9 O -0.552 6.552 10 C -0.275 4.275 11 C -0.033 4.033 12 C -0.185 4.185 13 C 0.131 3.869 14 C -0.434 4.434 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.763 5.763 18 Si 0.916 3.084 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.241 4.241 23 C -0.027 4.027 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.290 0.710 35 H 0.100 0.900 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -1.283 7.961 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.110 4.110 3 C -0.065 4.065 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.008 4.008 7 O -0.281 6.281 8 C 0.366 3.634 9 O -0.445 6.445 10 C -0.278 4.278 11 C -0.052 4.052 12 C -0.204 4.204 13 C 0.127 3.873 14 C -0.461 4.461 15 H 0.105 0.895 16 C -0.150 4.150 17 N -0.386 5.386 18 Si 0.740 3.260 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.260 4.260 23 C -0.046 4.046 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.961 -1.138 7.468 11.720 hybrid contribution 1.037 -0.030 -0.337 1.091 sum -7.924 -1.168 7.131 10.724 Atomic orbital electron populations 1.81247 1.13230 1.09041 1.08464 1.29301 0.95414 0.93069 0.93228 1.19325 0.81286 1.06163 0.99772 1.21441 0.95399 1.03957 0.94562 1.21511 0.93645 1.04313 0.96093 1.22789 0.78763 1.02160 0.97133 1.86560 1.21275 1.85550 1.34668 1.21574 0.89703 0.72016 0.80059 1.90702 1.67266 1.50426 1.36141 1.18227 0.86313 1.28215 0.95028 1.20464 0.94690 0.95264 0.94766 1.20981 0.91834 1.08410 0.99155 1.17848 0.93373 0.84819 0.91214 1.19894 0.91965 1.33866 1.00399 0.89485 1.26170 1.01618 0.92409 0.94841 1.69728 1.39145 1.20490 1.09210 0.86212 0.80708 0.80365 0.78752 1.18356 1.19954 1.18569 1.20719 0.93506 1.14730 0.97030 1.20536 0.93935 0.94322 0.95803 0.87026 0.87021 0.90637 0.90642 0.90228 0.90209 0.91821 0.91824 0.88066 0.85955 0.89886 0.88207 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.18 18.54 42.15 0.78 -4.40 16 2 C 0.21 1.68 15.43 -20.76 -0.32 1.36 16 3 C -0.03 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.67 5.17 -26.73 -0.14 -0.81 16 5 C -0.12 -0.94 5.59 -26.73 -0.15 -1.09 16 6 C 0.07 0.86 5.48 37.16 0.20 1.06 16 7 O -0.36 -6.36 9.45 -40.71 -0.38 -6.75 16 8 C 0.51 11.00 7.89 34.51 0.27 11.27 16 9 O -0.55 -12.77 16.11 -19.27 -0.31 -13.08 16 10 C -0.28 -6.30 5.89 -104.75 -0.62 -6.92 16 11 C -0.03 -0.79 9.52 -39.59 -0.38 -1.17 16 12 C -0.18 -4.59 8.63 -39.27 -0.34 -4.93 16 13 C 0.13 3.24 5.57 -106.80 -0.60 2.65 16 14 C -0.43 -10.42 9.04 -37.75 -0.34 -10.76 16 15 H 0.09 1.96 7.91 -52.49 -0.42 1.54 16 16 C 0.07 1.64 5.14 -17.31 -0.09 1.55 16 17 N -0.76 -18.02 10.95 55.56 0.61 -17.41 16 18 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 19 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 20 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 C -0.24 -5.47 9.73 -39.27 -0.38 -5.86 16 23 C -0.03 -0.59 9.55 -39.59 -0.38 -0.97 16 24 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.46 8.14 -51.94 -0.42 0.03 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 33 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 34 H 0.29 6.15 8.29 -40.82 -0.34 5.82 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.10 1.94 7.59 -52.49 -0.40 1.54 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -29.57 325.08 -7.33 -36.90 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.48 Total: 3.03 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.42 Total: -14.88 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 1.39 Total: -21.81 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.70 Total: -19.83 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.57 -7.33 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758684761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.800 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds