Wall clock time and date at job start Mon Mar 30 2020 01:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47138 * 287.62299 * 3 2 1 5 5 C 1.53002 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.45201 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.34805 * 117.00112 * 179.97438 * 7 6 5 9 9 O 1.21528 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.47286 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.39287 * 120.29060 * 356.63819 * 10 8 7 12 12 C 1.38203 * 120.08857 * 180.27521 * 11 10 8 13 13 C 1.38835 * 120.67877 * 359.73771 * 12 11 10 14 14 C 1.37593 * 120.58819 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.88255 * 0.02562 * 14 13 12 16 16 C 1.40864 * 120.33081 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00154 * 215.85139 * 16 15 14 18 18 C 1.40298 * 120.00223 * 35.84475 * 16 15 14 19 19 N 1.30618 * 119.99899 * 190.87325 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 10.86757 * 18 16 15 21 21 H 1.48496 * 109.47409 * 267.47577 * 20 18 16 22 22 H 1.48501 * 109.47064 * 27.47797 * 20 18 16 23 23 H 1.48507 * 109.47023 * 147.47416 * 20 18 16 24 24 H 1.09003 * 109.46929 * 167.62572 * 3 2 1 25 25 H 1.08997 * 109.47075 * 47.63255 * 3 2 1 26 26 H 1.09003 * 109.46988 * 60.00308 * 4 3 2 27 27 H 1.08997 * 109.47917 * 300.00439 * 4 3 2 28 28 H 1.08995 * 109.47236 * 59.99795 * 5 4 3 29 29 H 1.09005 * 109.46623 * 300.00598 * 5 4 3 30 30 H 1.09003 * 109.47296 * 59.99822 * 6 5 4 31 31 H 1.08997 * 109.47168 * 300.00318 * 6 5 4 32 32 H 1.08002 * 119.95920 * 0.02562 * 11 10 8 33 33 H 1.08001 * 119.66200 * 179.76055 * 12 11 10 34 34 H 1.08005 * 119.70778 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.06115 * 180.02562 * 14 13 12 36 36 H 0.97002 * 119.99756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.4358 1.3747 5 6 4.6483 -0.4345 1.3750 6 6 5.1584 -0.8716 2.7495 7 8 6.6104 -0.8710 2.7495 8 6 7.2226 -1.2343 3.8943 9 8 6.5609 -1.5437 4.8655 10 6 8.6935 -1.2565 3.9679 11 6 9.4578 -0.9710 2.8390 12 6 10.8376 -0.9985 2.9114 13 6 11.4784 -1.3040 4.1045 14 6 10.7509 -1.5847 5.2381 15 6 9.3447 -1.5635 5.1918 16 6 8.5906 -1.8500 6.3465 17 1 7.6576 -2.3875 6.2626 18 6 9.0514 -1.4371 7.6057 19 7 8.4728 -1.8792 8.6901 20 14 10.4925 -0.2551 7.7314 21 1 11.7554 -1.0260 7.8572 22 1 10.5476 0.5897 6.5113 23 1 10.3199 0.6106 8.9256 24 1 2.9709 1.0046 -0.2202 25 1 2.9717 -0.6917 -0.7593 26 1 2.7554 -1.4398 1.5950 27 1 2.7546 0.2565 2.1340 28 1 5.0108 0.5695 1.1549 29 1 5.0122 -1.1267 0.6157 30 1 4.7959 -1.8758 2.9692 31 1 4.7944 -0.1798 3.5090 32 1 8.9715 -0.7317 1.9048 33 1 11.4235 -0.7798 2.0308 34 1 12.5577 -1.3206 4.1434 35 1 11.2582 -1.8208 6.1618 36 1 8.7917 -1.5940 9.5607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767275807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:48 Heat of formation + Delta-G solvation = -57.679736 kcal Electronic energy + Delta-G solvation = -19563.318440 eV Core-core repulsion = 16397.821875 eV Total energy + Delta-G solvation = -3165.496566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49191 -37.68810 -37.27870 -35.77924 -34.67269 -33.72049 -30.65298 -30.58738 -29.74731 -25.72125 -24.62053 -22.54774 -21.48975 -21.25977 -19.66322 -17.78279 -17.57982 -16.86891 -16.40897 -15.92504 -15.39064 -15.27227 -14.30410 -14.14318 -13.91200 -13.79865 -13.67916 -13.24668 -12.78795 -12.62466 -12.57471 -12.11490 -11.99490 -11.80608 -11.66072 -11.46362 -11.13010 -11.00063 -10.92051 -10.76557 -10.52405 -10.33140 -9.94141 -9.85714 -9.34522 -8.88425 -7.90739 -7.71015 -7.03510 -4.62962 1.94080 2.47090 2.52598 2.55933 3.02077 3.10591 3.22198 3.38237 3.72127 3.78769 3.87293 4.46875 4.61360 4.62097 4.96469 5.09320 5.25113 5.27946 5.31463 5.54650 5.55111 5.73580 5.87013 5.92251 6.00108 6.03596 6.13015 6.37747 6.50009 6.69643 7.01677 7.09034 7.29049 7.29721 7.35167 7.58014 7.68623 7.94214 8.33267 8.49885 8.71344 9.00525 9.93054 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.003720 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.844405 B = 7525.804256 C = 8387.260727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.208 3.792 3 C -0.025 4.025 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.067 3.933 7 O -0.371 6.371 8 C 0.501 3.499 9 O -0.506 6.506 10 C -0.240 4.240 11 C -0.019 4.019 12 C -0.258 4.258 13 C -0.060 4.060 14 C -0.226 4.226 15 C 0.117 3.883 16 C -0.401 4.401 17 H 0.124 0.876 18 C 0.078 3.922 19 N -0.786 5.786 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.241 1.241 23 H -0.287 1.287 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 3.858 -11.875 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.110 4.110 3 C -0.065 4.065 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.008 4.008 7 O -0.290 6.290 8 C 0.351 3.649 9 O -0.396 6.396 10 C -0.243 4.243 11 C -0.038 4.038 12 C -0.277 4.277 13 C -0.078 4.078 14 C -0.245 4.245 15 C 0.112 3.888 16 C -0.427 4.427 17 H 0.141 0.859 18 C -0.143 4.143 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.164 1.164 23 H -0.214 1.214 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.898 3.726 -11.298 12.519 hybrid contribution 0.933 0.418 0.365 1.086 sum -2.964 4.144 -10.933 12.062 Atomic orbital electron populations 1.81245 1.13237 1.08993 1.08539 1.29310 0.95425 0.93077 0.93195 1.19324 0.81271 1.05502 1.00401 1.21450 0.95486 1.03167 0.95337 1.21496 0.93595 1.03374 0.96965 1.22741 0.78893 1.01756 0.97361 1.86534 1.21173 1.81594 1.39680 1.21269 0.89473 0.74516 0.79635 1.90787 1.66729 1.46128 1.35955 1.18648 0.87201 1.21410 0.97010 1.20958 0.93638 0.92956 0.96209 1.20372 0.93953 1.15819 0.97558 1.20803 0.97926 0.95813 0.93288 1.21106 0.93955 1.11475 0.97964 1.17511 0.91190 0.87953 0.92108 1.20251 1.07575 1.26542 0.88337 0.85886 1.26427 0.96982 0.95804 0.95103 1.69559 1.37108 1.34661 0.99538 0.86357 0.80278 0.80867 0.79074 1.19205 1.16370 1.21433 0.87082 0.87083 0.90608 0.90606 0.90361 0.90381 0.91846 0.91791 0.87346 0.88225 0.88346 0.87531 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.42 18.54 42.16 0.78 -4.64 16 2 C 0.21 1.79 15.43 -20.76 -0.32 1.47 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.28 16 4 C -0.12 -0.76 5.17 -26.73 -0.14 -0.90 16 5 C -0.12 -1.00 5.59 -26.73 -0.15 -1.15 16 6 C 0.07 0.94 5.48 37.15 0.20 1.14 16 7 O -0.37 -6.77 9.47 -40.78 -0.39 -7.15 16 8 C 0.50 11.40 7.85 34.41 0.27 11.67 16 9 O -0.51 -12.96 13.32 -19.29 -0.26 -13.21 16 10 C -0.24 -5.61 5.92 -104.39 -0.62 -6.23 16 11 C -0.02 -0.39 9.60 -39.20 -0.38 -0.76 16 12 C -0.26 -4.97 10.03 -39.37 -0.39 -5.36 16 13 C -0.06 -1.20 10.01 -39.60 -0.40 -1.60 16 14 C -0.23 -5.18 7.02 -38.88 -0.27 -5.45 16 15 C 0.12 2.93 5.04 -106.53 -0.54 2.40 16 16 C -0.40 -10.91 8.32 -37.81 -0.31 -11.23 16 17 H 0.12 3.69 5.95 -52.49 -0.31 3.38 16 18 C 0.08 2.03 5.47 -17.29 -0.09 1.93 16 19 N -0.79 -20.66 13.92 55.57 0.77 -19.89 16 20 Si 0.91 20.00 24.51 -169.99 -4.17 15.84 16 21 H -0.27 -5.55 6.74 56.52 0.38 -5.17 16 22 H -0.24 -5.42 6.75 56.52 0.38 -5.04 16 23 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.90 7.61 -52.49 -0.40 1.50 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 35 H 0.11 2.38 4.96 -52.49 -0.26 2.12 16 36 H 0.29 6.79 8.29 -40.82 -0.34 6.46 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -31.15 315.05 -6.19 -37.34 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.37 Total: 1.32 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.31 Total: -14.35 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 1.55 Total: -24.52 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.64 Total: -20.36 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.15 -6.19 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767275807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.344 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds