Wall clock time and date at job start Mon Mar 30 2020 01:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47138 * 287.62299 * 3 2 1 5 5 C 1.53002 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.45201 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.34805 * 117.00112 * 179.97438 * 7 6 5 9 9 O 1.21528 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.47286 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.39287 * 120.29060 * 356.63819 * 10 8 7 12 12 C 1.38203 * 120.08857 * 180.27521 * 11 10 8 13 13 C 1.38835 * 120.67877 * 359.73771 * 12 11 10 14 14 C 1.37593 * 120.58819 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.88255 * 0.02562 * 14 13 12 16 16 C 1.40864 * 120.33081 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00154 * 215.85139 * 16 15 14 18 18 C 1.40298 * 120.00223 * 35.84475 * 16 15 14 19 19 N 1.30618 * 119.99899 * 190.87325 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 10.86757 * 18 16 15 21 21 H 1.48496 * 109.47409 * 267.47577 * 20 18 16 22 22 H 1.48501 * 109.47064 * 27.47797 * 20 18 16 23 23 H 1.48507 * 109.47023 * 147.47416 * 20 18 16 24 24 H 1.09003 * 109.46929 * 167.62572 * 3 2 1 25 25 H 1.08997 * 109.47075 * 47.63255 * 3 2 1 26 26 H 1.09003 * 109.46988 * 60.00308 * 4 3 2 27 27 H 1.08997 * 109.47917 * 300.00439 * 4 3 2 28 28 H 1.08995 * 109.47236 * 59.99795 * 5 4 3 29 29 H 1.09005 * 109.46623 * 300.00598 * 5 4 3 30 30 H 1.09003 * 109.47296 * 59.99822 * 6 5 4 31 31 H 1.08997 * 109.47168 * 300.00318 * 6 5 4 32 32 H 1.08002 * 119.95920 * 0.02562 * 11 10 8 33 33 H 1.08001 * 119.66200 * 179.76055 * 12 11 10 34 34 H 1.08005 * 119.70778 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.06115 * 180.02562 * 14 13 12 36 36 H 0.97002 * 119.99756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.4358 1.3747 5 6 4.6483 -0.4345 1.3750 6 6 5.1584 -0.8716 2.7495 7 8 6.6104 -0.8710 2.7495 8 6 7.2226 -1.2343 3.8943 9 8 6.5609 -1.5437 4.8655 10 6 8.6935 -1.2565 3.9679 11 6 9.4578 -0.9710 2.8390 12 6 10.8376 -0.9985 2.9114 13 6 11.4784 -1.3040 4.1045 14 6 10.7509 -1.5847 5.2381 15 6 9.3447 -1.5635 5.1918 16 6 8.5906 -1.8500 6.3465 17 1 7.6576 -2.3875 6.2626 18 6 9.0514 -1.4371 7.6057 19 7 8.4728 -1.8792 8.6901 20 14 10.4925 -0.2551 7.7314 21 1 11.7554 -1.0260 7.8572 22 1 10.5476 0.5897 6.5113 23 1 10.3199 0.6106 8.9256 24 1 2.9709 1.0046 -0.2202 25 1 2.9717 -0.6917 -0.7593 26 1 2.7554 -1.4398 1.5950 27 1 2.7546 0.2565 2.1340 28 1 5.0108 0.5695 1.1549 29 1 5.0122 -1.1267 0.6157 30 1 4.7959 -1.8758 2.9692 31 1 4.7944 -0.1798 3.5090 32 1 8.9715 -0.7317 1.9048 33 1 11.4235 -0.7798 2.0308 34 1 12.5577 -1.3206 4.1434 35 1 11.2582 -1.8208 6.1618 36 1 8.7917 -1.5940 9.5607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767275807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:48 Heat of formation + Delta-G solvation = -76.050668 kcal Electronic energy + Delta-G solvation = -19564.115064 eV Core-core repulsion = 16397.821875 eV Total energy + Delta-G solvation = -3166.293189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16965 -39.26078 -38.10026 -37.24984 -35.72033 -35.45651 -32.36499 -32.11415 -30.79372 -27.43021 -25.75072 -24.08952 -23.07392 -22.16679 -21.31144 -19.46977 -18.51372 -18.38908 -17.55040 -17.45721 -16.96038 -16.33017 -15.81063 -15.50781 -15.41604 -14.97124 -14.84867 -14.47437 -14.17815 -13.97282 -13.85702 -13.65105 -13.26051 -12.83414 -12.74253 -12.61381 -12.45257 -12.42036 -12.24102 -12.08649 -11.94957 -11.63077 -11.58476 -11.24971 -11.09983 -10.69588 -9.59685 -9.47223 -8.89038 -6.56498 0.21020 0.84442 1.25214 1.38069 1.48002 1.74951 1.87527 1.97934 2.05482 2.10512 2.65142 3.15384 3.47643 3.90600 4.00958 4.21375 4.31735 4.35088 4.40034 4.45057 4.52670 4.63593 4.75714 4.84494 4.88502 4.91214 4.98570 5.09811 5.27968 5.33223 5.36344 5.46679 5.65205 5.70976 5.87664 5.94399 6.25062 6.41885 6.66406 6.68794 6.74196 7.26445 8.15023 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.003720 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.844405 B = 7525.804256 C = 8387.260727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.236 3.764 3 C -0.016 4.016 4 C -0.112 4.112 5 C -0.101 4.101 6 C 0.055 3.945 7 O -0.359 6.359 8 C 0.499 3.501 9 O -0.547 6.547 10 C -0.261 4.261 11 C -0.020 4.020 12 C -0.234 4.234 13 C -0.052 4.052 14 C -0.247 4.247 15 C 0.103 3.897 16 C -0.450 4.450 17 H 0.074 0.926 18 C 0.038 3.962 19 N -0.840 5.840 20 Si 0.967 3.033 21 H -0.244 1.244 22 H -0.247 1.247 23 H -0.279 1.279 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 5.463 -15.593 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.055 4.055 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.019 4.019 7 O -0.277 6.277 8 C 0.350 3.650 9 O -0.440 6.440 10 C -0.264 4.264 11 C -0.038 4.038 12 C -0.253 4.253 13 C -0.070 4.070 14 C -0.266 4.266 15 C 0.099 3.901 16 C -0.478 4.478 17 H 0.092 0.908 18 C -0.178 4.178 19 N -0.466 5.466 20 Si 0.789 3.211 21 H -0.168 1.168 22 H -0.170 1.170 23 H -0.206 1.206 24 H 0.159 0.841 25 H 0.160 0.840 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.952 5.326 -15.052 15.995 hybrid contribution 0.033 -0.082 1.187 1.190 sum -0.919 5.243 -13.865 14.852 Atomic orbital electron populations 1.81276 1.15598 1.11599 1.10844 1.30020 0.96042 0.90876 0.91091 1.19549 0.78344 1.08042 0.99599 1.21375 0.94105 1.02936 0.96685 1.21463 0.94417 1.04568 0.93398 1.23212 0.76395 1.01344 1.00947 1.86491 1.23603 1.80481 1.37120 1.21444 0.89817 0.73670 0.80067 1.90792 1.67695 1.47734 1.37763 1.19070 0.88042 1.21469 0.97792 1.21341 0.94334 0.91933 0.96185 1.21004 0.93742 1.11808 0.98699 1.21334 1.00149 0.93289 0.92244 1.21230 0.92980 1.12829 0.99563 1.17780 0.92596 0.87628 0.92084 1.20018 1.07059 1.30173 0.90518 0.90815 1.27171 0.99432 0.96920 0.94267 1.69609 1.39559 1.37212 1.00184 0.85485 0.78013 0.78850 0.78769 1.16824 1.17044 1.20557 0.84070 0.84016 0.91190 0.91277 0.88642 0.88538 0.92832 0.92973 0.84066 0.83510 0.84072 0.87510 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.48 18.54 20.01 0.37 -12.11 16 2 C 0.24 3.67 15.43 89.44 1.38 5.05 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.11 -1.21 5.17 30.59 0.16 -1.05 16 5 C -0.10 -1.43 5.59 30.59 0.17 -1.26 16 6 C 0.06 1.52 5.48 71.98 0.39 1.92 16 7 O -0.36 -12.78 9.47 -57.17 -0.54 -13.32 16 8 C 0.50 23.28 7.85 70.20 0.55 23.83 16 9 O -0.55 -30.03 13.32 19.74 0.26 -29.76 16 10 C -0.26 -12.10 5.92 -19.71 -0.12 -12.22 16 11 C -0.02 -0.72 9.60 22.51 0.22 -0.51 16 12 C -0.23 -7.60 10.03 22.40 0.22 -7.38 16 13 C -0.05 -1.84 10.01 22.26 0.22 -1.61 16 14 C -0.25 -10.89 7.02 22.72 0.16 -10.74 16 15 C 0.10 5.25 5.04 -21.10 -0.11 5.15 16 16 C -0.45 -26.21 8.32 23.41 0.19 -26.01 16 17 H 0.07 4.90 5.95 -2.91 -0.02 4.88 16 18 C 0.04 2.05 5.47 85.37 0.47 2.52 16 19 N -0.84 -47.33 13.92 21.89 0.30 -47.03 16 20 Si 0.97 41.79 24.51 68.60 1.68 43.48 16 21 H -0.24 -9.51 6.74 99.48 0.67 -8.84 16 22 H -0.25 -10.73 6.75 99.48 0.67 -10.06 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 24 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.14 4.20 7.61 -2.91 -0.02 4.17 16 33 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.11 4.63 4.96 -2.91 -0.01 4.62 16 36 H 0.30 14.82 8.29 -92.71 -0.77 14.05 16 Total: -1.00 -75.77 315.05 7.18 -68.59 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.02 Total: 12.40 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.08 Total: -22.24 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.68 Total: -59.14 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.28 Total: -43.08 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.48 kcal Total: -75.77 7.18 -68.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767275807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.464 kcal (2) G-P(sol) polarization free energy of solvation -75.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds