Wall clock time and date at job start Mon Mar 30 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99811 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34224 * 117.00077 * 180.02562 * 14 13 11 16 16 O 1.20833 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00302 * 180.02562 * 15 14 13 18 18 F 1.39895 * 110.01918 * 54.29350 * 17 15 14 19 19 C 1.54278 * 110.02911 * 292.90578 * 17 15 14 20 20 C 1.54964 * 104.15716 * 217.13549 * 19 17 15 21 21 C 1.54892 * 102.78107 * 37.88971 * 20 19 17 22 22 C 1.53876 * 110.03542 * 175.68906 * 17 15 14 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 25 25 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 26 26 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 27 27 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 28 28 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 29 29 H 1.08994 * 110.48416 * 335.77980 * 19 17 15 30 30 H 1.08998 * 110.48215 * 98.42612 * 19 17 15 31 31 H 1.08999 * 110.72090 * 279.57358 * 20 19 17 32 32 H 1.09001 * 110.92086 * 156.29604 * 20 19 17 33 33 H 1.08999 * 110.48750 * 203.40604 * 21 20 19 34 34 H 1.08993 * 110.48685 * 80.75666 * 21 20 19 35 35 H 1.08995 * 110.03253 * 238.56709 * 22 17 15 36 36 H 1.08997 * 110.03318 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0044 12 8 0.5613 -5.1050 0.0046 13 6 2.7330 -6.0288 0.0060 14 8 2.0070 -7.2863 0.0070 15 6 2.7380 -8.4120 0.0090 16 8 3.9447 -8.3488 0.0094 17 6 2.0539 -9.7548 0.0096 18 9 1.1542 -9.8343 -1.0588 19 6 1.3098 -9.9681 1.3441 20 6 1.5029 -11.4751 1.6490 21 6 2.9549 -11.7368 1.1774 22 6 3.0992 -10.8790 -0.0967 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 3.1566 -3.4355 0.0029 27 1 3.3596 -5.9699 0.8959 28 1 3.3598 -5.9723 -0.8841 29 1 1.7556 -9.3597 2.1309 30 1 0.2513 -9.7332 1.2323 31 1 0.7967 -12.0777 1.0779 32 1 1.4020 -11.6723 2.7162 33 1 3.0960 -12.7923 0.9446 34 1 3.6667 -11.4142 1.9371 35 1 2.9050 -11.4871 -0.9802 36 1 4.1012 -10.4534 -0.1492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772790538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:03 Heat of formation + Delta-G solvation = -204.125228 kcal Electronic energy + Delta-G solvation = -20734.211538 eV Core-core repulsion = 17131.595394 eV Total energy + Delta-G solvation = -3602.616143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.12170 -41.96682 -40.49896 -38.50709 -37.49057 -36.22255 -34.44542 -31.27995 -29.99242 -29.95429 -28.39771 -24.90432 -23.90242 -21.96785 -21.71317 -21.07649 -19.64064 -19.19405 -18.26628 -18.04668 -17.44423 -17.15549 -16.93892 -16.45592 -16.18349 -16.03865 -15.38066 -15.06853 -14.74010 -14.56405 -14.25337 -14.15084 -13.93332 -13.71122 -13.18266 -12.95634 -12.72971 -12.62343 -12.27441 -12.24648 -12.24115 -12.06150 -11.98330 -11.62594 -11.51635 -11.42747 -10.96761 -10.83416 -9.96910 -8.30901 -6.47814 0.66633 0.99256 1.43845 1.45562 1.49783 1.57126 2.26560 2.44840 2.98761 3.04429 3.14448 3.27009 3.48606 3.65923 3.94364 3.96887 4.11613 4.21028 4.31035 4.33571 4.58905 4.75123 4.89689 4.98498 5.02553 5.06768 5.15898 5.17198 5.19397 5.36201 5.38731 5.60175 5.80136 6.23582 6.60667 6.73552 7.18001 7.32464 8.81313 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.049365 B = 0.003022 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.064512 B = 9262.515576 C = 9486.204085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.056 3.944 14 O -0.340 6.340 15 C 0.449 3.551 16 O -0.498 6.498 17 C 0.126 3.874 18 F -0.194 7.194 19 C -0.145 4.145 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.142 4.142 23 H 0.269 0.731 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.413 0.587 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -22.848 3.031 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.021 4.021 14 O -0.255 6.255 15 C 0.290 3.710 16 O -0.386 6.386 17 C 0.107 3.893 18 F -0.174 7.174 19 C -0.182 4.182 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.180 4.180 23 H 0.078 0.922 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.250 0.750 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.880 -22.815 2.999 24.665 hybrid contribution 0.190 1.456 -0.349 1.510 sum 9.070 -21.358 2.651 23.355 Atomic orbital electron populations 1.70132 1.08282 1.28674 1.49807 1.26064 0.95775 1.03916 0.93803 0.85141 0.78507 0.76903 0.78579 1.19668 1.21000 1.17821 1.21606 0.94447 0.90333 1.53108 0.89519 1.18643 0.88578 0.83788 0.94611 1.46029 1.11774 1.04613 1.72412 1.20651 0.89252 0.84743 0.76905 1.90699 1.18942 1.85294 1.51445 1.22883 0.92729 0.78908 1.07537 1.86617 1.41312 1.14661 1.82923 1.24533 0.86859 0.87225 0.72358 1.90647 1.15271 1.87552 1.45089 1.21901 0.90051 0.89184 0.88177 1.92942 1.69543 1.96761 1.58157 1.23099 1.01531 1.00806 0.92812 1.22586 0.97216 0.92276 1.03430 1.22404 0.96991 1.00765 0.95243 1.22914 0.98195 0.94348 1.02531 0.92173 0.99047 0.98883 0.75029 0.85074 0.85633 0.89122 0.89143 0.89917 0.88400 0.88256 0.90250 0.88085 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 41.77 29.54 68.60 2.03 43.79 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.56 -29.76 9.28 25.60 0.24 -29.52 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.41 5.43 85.63 0.46 14.87 16 10 N -0.70 -28.79 5.55 -466.78 -2.59 -31.38 16 11 C 0.50 20.23 7.91 87.66 0.69 20.93 16 12 O -0.58 -29.90 16.50 15.76 0.26 -29.64 16 13 C 0.06 1.63 5.94 71.24 0.42 2.05 16 14 O -0.34 -10.96 9.75 -45.00 -0.44 -11.40 16 15 C 0.45 12.11 6.83 71.23 0.49 12.59 16 16 O -0.50 -13.72 14.97 21.94 0.33 -13.39 16 17 C 0.13 2.76 1.59 -10.81 -0.02 2.74 16 18 F -0.19 -5.08 16.78 44.97 0.75 -4.32 16 19 C -0.14 -2.54 6.15 31.70 0.19 -2.35 16 20 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 21 C -0.12 -1.19 6.83 31.67 0.22 -0.98 16 22 C -0.14 -2.23 6.25 31.32 0.20 -2.03 16 23 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 26 H 0.41 13.60 8.32 -92.71 -0.77 12.83 16 27 H 0.13 3.02 8.13 -2.39 -0.02 3.00 16 28 H 0.13 3.03 8.13 -2.39 -0.02 3.01 16 29 H 0.09 1.55 7.85 -2.39 -0.02 1.53 16 30 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 1.37 8.02 -2.39 -0.02 1.35 16 36 H 0.10 1.68 6.41 -2.39 -0.02 1.66 16 Total: -1.00 -73.90 316.00 4.53 -69.36 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.33 Total: 14.44 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 3.58 Total: 17.93 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.30 Total: -86.77 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: 0.15 Total: -54.43 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.75 Total: -4.32 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -73.90 4.53 -69.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772790538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.761 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds