Wall clock time and date at job start Mon Mar 30 2020 01:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47757 * 11.81908 * 3 2 1 5 5 C 1.52996 * 109.47547 * 179.97438 * 4 3 2 6 6 O 1.45191 * 109.47311 * 179.97438 * 5 4 3 7 7 C 1.34225 * 117.00135 * 180.02562 * 6 5 4 8 8 O 1.20821 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47474 * 180.02562 * 9 7 6 11 11 C 1.37633 * 120.12442 * 264.99900 * 10 9 7 12 12 C 1.38620 * 120.24819 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.49963 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12861 * 84.72291 * 10 9 7 16 16 C 1.41396 * 120.24692 * 0.02562 * 15 10 9 17 17 H 1.08002 * 119.99440 * 333.89889 * 16 15 10 18 18 C 1.39936 * 120.00256 * 153.89938 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.70459 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.70691 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.09001 * 109.46957 * 251.81837 * 3 2 1 25 25 H 1.09005 * 109.46847 * 131.82245 * 3 2 1 26 26 H 1.09008 * 109.46789 * 59.99548 * 4 3 2 27 27 H 1.09000 * 109.46773 * 300.00107 * 4 3 2 28 28 H 1.09001 * 109.46802 * 60.00152 * 5 4 3 29 29 H 1.08997 * 109.47175 * 300.00744 * 5 4 3 30 30 H 1.09007 * 109.46910 * 300.00002 * 9 7 6 31 31 H 1.08998 * 109.47456 * 59.99778 * 9 7 6 32 32 H 1.08008 * 119.87960 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.74938 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.87746 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.12586 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4110 -0.2954 5 6 4.6487 -1.4101 -0.2961 6 8 5.1333 -2.7498 -0.5758 7 6 6.4641 -2.9213 -0.6118 8 8 7.1997 -1.9831 -0.4155 9 6 7.0408 -4.2841 -0.8969 10 6 8.5457 -4.2063 -0.8801 11 6 9.2415 -4.0290 -2.0543 12 6 10.6257 -3.9566 -2.0417 13 6 11.3251 -4.0621 -0.8491 14 6 10.6503 -4.2408 0.3367 15 6 9.2446 -4.3089 0.3367 16 6 8.5402 -4.4859 1.5499 17 1 7.5225 -4.1357 1.6394 18 6 9.1617 -5.1148 2.6345 19 7 10.2507 -5.8154 2.4483 20 14 8.4364 -4.9540 4.3485 21 1 7.2120 -4.1158 4.2912 22 1 8.0894 -6.3014 4.8676 23 1 9.4309 -4.3175 5.2491 24 1 2.9711 0.3215 0.9764 25 1 2.9709 0.6861 -0.7659 26 1 2.7554 -1.7318 -1.2718 27 1 2.7557 -2.0963 0.4704 28 1 5.0122 -1.0891 0.6801 29 1 5.0113 -0.7247 -1.0621 30 1 6.7052 -4.9874 -0.1348 31 1 6.7052 -4.6229 -1.8770 32 1 8.7069 -3.9451 -2.9891 33 1 11.1635 -3.8178 -2.9679 34 1 12.4035 -4.0039 -0.8509 35 1 11.1971 -4.3232 1.2644 36 1 10.6818 -6.2510 3.2002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777164244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:18 Heat of formation + Delta-G solvation = -58.846561 kcal Electronic energy + Delta-G solvation = -19756.909205 eV Core-core repulsion = 16591.362042 eV Total energy + Delta-G solvation = -3165.547163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95980 -37.75819 -37.24779 -36.01672 -33.95224 -33.68242 -31.84648 -29.52815 -28.17563 -26.71881 -25.07250 -22.34769 -21.18143 -20.96216 -19.38228 -17.95371 -17.23232 -16.89437 -16.60292 -15.72737 -15.45730 -15.18778 -14.52508 -14.19023 -13.99496 -13.67222 -13.31100 -13.28032 -12.65098 -12.52466 -12.29931 -12.09816 -11.80158 -11.61995 -11.45986 -11.37359 -11.19393 -11.07422 -11.02985 -10.75057 -10.43117 -10.27152 -9.77827 -9.54827 -9.43265 -9.21613 -7.39637 -7.36896 -6.79302 -4.41463 2.37629 2.50360 2.68308 2.84592 2.91982 3.05272 3.09991 3.22146 3.27549 3.75063 3.90002 4.60371 4.60491 4.71956 4.85664 5.14541 5.14911 5.35194 5.52976 5.71433 5.74361 5.82563 5.94986 6.08059 6.23438 6.38024 6.45824 6.70965 6.92125 7.03038 7.23401 7.26709 7.35543 7.58178 7.85153 7.99495 8.07071 8.24508 8.42967 8.59020 8.84762 8.94265 10.14667 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.004586 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.711202 B = 6104.293417 C = 7494.679168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.211 3.789 3 C -0.024 4.024 4 C -0.117 4.117 5 C 0.065 3.935 6 O -0.368 6.368 7 C 0.460 3.540 8 O -0.492 6.492 9 C -0.042 4.042 10 C -0.195 4.195 11 C -0.077 4.077 12 C -0.240 4.240 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.130 3.870 16 C -0.458 4.458 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.904 3.096 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.272 1.272 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 5.544 -2.667 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.107 4.107 3 C -0.064 4.064 4 C -0.155 4.155 5 C -0.010 4.010 6 O -0.286 6.286 7 C 0.302 3.698 8 O -0.377 6.377 9 C -0.079 4.079 10 C -0.197 4.197 11 C -0.095 4.095 12 C -0.259 4.259 13 C -0.123 4.123 14 C -0.178 4.178 15 C 0.127 3.873 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.417 5.417 20 Si 0.728 3.272 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 H 0.132 0.868 25 H 0.131 0.869 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.387 5.714 -2.465 11.262 hybrid contribution 0.307 0.197 0.861 0.935 sum -9.080 5.911 -1.604 10.953 Atomic orbital electron populations 1.81243 1.13087 1.08326 1.08952 1.29091 0.95188 0.93312 0.93130 1.19162 0.81682 0.99438 1.06138 1.21450 0.94234 0.95274 1.04588 1.22800 0.92959 0.83043 1.02176 1.86513 1.26335 1.32906 1.82882 1.24488 0.79144 0.93058 0.73074 1.90642 1.60022 1.43089 1.43904 1.19991 0.94435 0.90217 1.03266 1.19051 0.90908 1.15946 0.93756 1.20329 0.94042 0.99491 0.95657 1.20322 0.93780 1.15308 0.96514 1.20708 0.97401 1.00575 0.93584 1.21314 0.94636 1.05010 0.96809 1.17357 0.91863 0.86893 0.91140 1.19520 1.00115 1.33361 0.95739 0.90728 1.25885 0.94310 0.92772 1.01064 1.69820 1.16691 1.21984 1.33213 0.86329 0.80230 0.78941 0.81681 1.18445 1.19908 1.19663 0.86802 0.86870 0.89914 0.89787 0.90929 0.91135 0.87422 0.89342 0.89524 0.89505 0.89452 0.86410 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.34 18.54 42.15 0.78 -4.56 16 2 C 0.21 1.84 15.43 -20.76 -0.32 1.52 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.12 -0.88 5.55 -26.73 -0.15 -1.03 16 5 C 0.06 0.72 5.47 37.16 0.20 0.92 16 6 O -0.37 -5.59 10.22 -39.25 -0.40 -5.99 16 7 C 0.46 8.65 7.57 36.01 0.27 8.93 16 8 O -0.49 -10.81 15.78 -18.75 -0.30 -11.10 16 9 C -0.04 -0.79 5.29 -29.03 -0.15 -0.95 16 10 C -0.20 -4.51 4.43 -103.91 -0.46 -4.97 16 11 C -0.08 -1.70 9.66 -39.66 -0.38 -2.08 16 12 C -0.24 -5.37 10.05 -39.29 -0.39 -5.77 16 13 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 14 C -0.16 -4.10 8.69 -38.87 -0.34 -4.43 16 15 C 0.13 3.35 5.56 -106.82 -0.59 2.76 16 16 C -0.46 -11.64 8.14 -37.75 -0.31 -11.95 16 17 H 0.07 1.84 6.67 -52.49 -0.35 1.49 16 18 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 19 N -0.79 -19.85 10.95 55.55 0.61 -19.24 16 20 Si 0.90 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 24 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.11 2.03 7.08 -51.92 -0.37 1.67 16 31 H 0.09 1.40 8.05 -51.93 -0.42 0.99 16 32 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -30.93 322.44 -7.16 -38.09 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.40 Total: 3.13 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.28 Total: -18.40 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 1.39 Total: -23.80 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.70 Total: -17.10 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.93 -7.16 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.759 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds