Wall clock time and date at job start Mon Mar 30 2020 01:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47757 * 11.81908 * 3 2 1 5 5 C 1.52996 * 109.47547 * 179.97438 * 4 3 2 6 6 O 1.45191 * 109.47311 * 179.97438 * 5 4 3 7 7 C 1.34225 * 117.00135 * 180.02562 * 6 5 4 8 8 O 1.20821 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47474 * 180.02562 * 9 7 6 11 11 C 1.37633 * 120.12442 * 264.99900 * 10 9 7 12 12 C 1.38620 * 120.24819 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.49963 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12861 * 84.72291 * 10 9 7 16 16 C 1.41396 * 120.24692 * 0.02562 * 15 10 9 17 17 H 1.08002 * 119.99440 * 333.89889 * 16 15 10 18 18 C 1.39936 * 120.00256 * 153.89938 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.70459 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.70691 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.09001 * 109.46957 * 251.81837 * 3 2 1 25 25 H 1.09005 * 109.46847 * 131.82245 * 3 2 1 26 26 H 1.09008 * 109.46789 * 59.99548 * 4 3 2 27 27 H 1.09000 * 109.46773 * 300.00107 * 4 3 2 28 28 H 1.09001 * 109.46802 * 60.00152 * 5 4 3 29 29 H 1.08997 * 109.47175 * 300.00744 * 5 4 3 30 30 H 1.09007 * 109.46910 * 300.00002 * 9 7 6 31 31 H 1.08998 * 109.47456 * 59.99778 * 9 7 6 32 32 H 1.08008 * 119.87960 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.74938 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.87746 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.12586 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4110 -0.2954 5 6 4.6487 -1.4101 -0.2961 6 8 5.1333 -2.7498 -0.5758 7 6 6.4641 -2.9213 -0.6118 8 8 7.1997 -1.9831 -0.4155 9 6 7.0408 -4.2841 -0.8969 10 6 8.5457 -4.2063 -0.8801 11 6 9.2415 -4.0290 -2.0543 12 6 10.6257 -3.9566 -2.0417 13 6 11.3251 -4.0621 -0.8491 14 6 10.6503 -4.2408 0.3367 15 6 9.2446 -4.3089 0.3367 16 6 8.5402 -4.4859 1.5499 17 1 7.5225 -4.1357 1.6394 18 6 9.1617 -5.1148 2.6345 19 7 10.2507 -5.8154 2.4483 20 14 8.4364 -4.9540 4.3485 21 1 7.2120 -4.1158 4.2912 22 1 8.0894 -6.3014 4.8676 23 1 9.4309 -4.3175 5.2491 24 1 2.9711 0.3215 0.9764 25 1 2.9709 0.6861 -0.7659 26 1 2.7554 -1.7318 -1.2718 27 1 2.7557 -2.0963 0.4704 28 1 5.0122 -1.0891 0.6801 29 1 5.0113 -0.7247 -1.0621 30 1 6.7052 -4.9874 -0.1348 31 1 6.7052 -4.6229 -1.8770 32 1 8.7069 -3.9451 -2.9891 33 1 11.1635 -3.8178 -2.9679 34 1 12.4035 -4.0039 -0.8509 35 1 11.1971 -4.3232 1.2644 36 1 10.6818 -6.2510 3.2002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777164244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:18 Heat of formation + Delta-G solvation = -74.572739 kcal Electronic energy + Delta-G solvation = -19757.591143 eV Core-core repulsion = 16591.362042 eV Total energy + Delta-G solvation = -3166.229101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.35345 -39.40569 -38.09658 -37.30156 -35.49541 -34.75209 -33.49516 -31.34754 -29.34794 -28.03361 -26.84606 -23.29639 -22.81376 -22.43976 -21.01652 -19.06048 -18.83338 -18.06062 -17.67987 -17.26870 -16.79765 -16.26299 -16.17543 -15.43303 -15.39620 -14.92617 -14.52124 -14.36861 -14.28626 -13.59283 -13.54456 -13.32440 -13.27944 -12.92831 -12.76245 -12.72150 -12.67636 -12.48968 -12.26188 -12.08681 -11.93107 -11.33224 -11.30455 -11.28150 -11.19416 -11.02050 -9.22063 -9.19254 -8.59130 -6.30042 0.95099 1.11782 1.39408 1.46250 1.52144 1.54748 1.66053 1.84104 2.09163 2.21832 2.79569 3.07867 3.76749 4.00501 4.06047 4.10572 4.23931 4.40380 4.45144 4.55055 4.61637 4.63761 4.73238 4.77898 4.83597 5.04453 5.11868 5.20345 5.21456 5.38026 5.54763 5.59753 5.78543 6.04454 6.16694 6.23165 6.41862 6.61818 6.73732 6.98751 7.03947 7.10925 8.37302 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.004586 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.711202 B = 6104.293417 C = 7494.679168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.240 3.760 3 C -0.016 4.016 4 C -0.107 4.107 5 C 0.056 3.944 6 O -0.364 6.364 7 C 0.469 3.531 8 O -0.530 6.530 9 C -0.045 4.045 10 C -0.199 4.199 11 C -0.086 4.086 12 C -0.242 4.242 13 C -0.114 4.114 14 C -0.193 4.193 15 C 0.097 3.903 16 C -0.484 4.484 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.269 1.269 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 6.195 -3.374 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.077 4.077 3 C -0.056 4.056 4 C -0.145 4.145 5 C -0.018 4.018 6 O -0.282 6.282 7 C 0.313 3.687 8 O -0.418 6.418 9 C -0.082 4.082 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.261 4.261 13 C -0.132 4.132 14 C -0.212 4.212 15 C 0.095 3.905 16 C -0.514 4.514 17 H 0.091 0.909 18 C -0.177 4.177 19 N -0.451 5.451 20 Si 0.792 3.208 21 H -0.183 1.183 22 H -0.188 1.188 23 H -0.194 1.194 24 H 0.155 0.845 25 H 0.161 0.839 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.431 6.356 -3.188 12.624 hybrid contribution 0.637 0.023 0.954 1.148 sum -9.793 6.379 -2.234 11.899 Atomic orbital electron populations 1.81278 1.15189 1.10403 1.11356 1.29610 0.95588 0.91383 0.91084 1.19339 0.79184 0.98514 1.08521 1.21363 0.91541 0.96757 1.04879 1.23176 0.94980 0.81088 1.02510 1.86469 1.24081 1.35451 1.82162 1.24209 0.80061 0.92275 0.72180 1.90630 1.61176 1.44185 1.45847 1.20005 0.92157 0.90762 1.05263 1.19480 0.93233 1.14115 0.93231 1.20778 0.94309 0.98492 0.96770 1.20741 0.94383 1.13895 0.97114 1.20982 0.98575 1.00191 0.93488 1.21320 0.95243 1.07650 0.97009 1.17741 0.92222 0.87902 0.92611 1.19679 1.00339 1.34599 0.96752 0.90896 1.26659 0.94601 0.92016 1.04458 1.69880 1.17936 1.22777 1.34489 0.85322 0.79342 0.79211 0.76900 1.18252 1.18818 1.19381 0.84476 0.83936 0.89454 0.90165 0.91105 0.90010 0.87659 0.85776 0.86077 0.86516 0.87631 0.88448 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.84 18.54 20.00 0.37 -11.47 16 2 C 0.24 3.70 15.43 89.44 1.38 5.08 16 3 C -0.02 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.11 -1.30 5.55 30.59 0.17 -1.13 16 5 C 0.06 1.10 5.47 71.98 0.39 1.50 16 6 O -0.36 -10.32 10.22 -51.37 -0.53 -10.85 16 7 C 0.47 17.00 7.57 71.24 0.54 17.54 16 8 O -0.53 -22.94 15.78 21.98 0.35 -22.59 16 9 C -0.04 -1.64 5.29 29.10 0.15 -1.49 16 10 C -0.20 -9.09 4.43 -19.41 -0.09 -9.17 16 11 C -0.09 -3.61 9.66 22.22 0.21 -3.40 16 12 C -0.24 -10.44 10.05 22.46 0.23 -10.22 16 13 C -0.11 -5.38 10.02 22.22 0.22 -5.16 16 14 C -0.19 -10.27 8.69 22.73 0.20 -10.07 16 15 C 0.10 5.13 5.56 -21.29 -0.12 5.01 16 16 C -0.48 -25.17 8.14 23.46 0.19 -24.98 16 17 H 0.07 3.67 6.67 -2.91 -0.02 3.65 16 18 C 0.04 1.85 5.16 85.25 0.44 2.30 16 19 N -0.82 -42.58 10.95 21.82 0.24 -42.34 16 20 Si 0.97 37.73 29.59 68.60 2.03 39.76 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 24 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.14 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.11 3.92 7.08 -2.38 -0.02 3.90 16 31 H 0.12 3.58 8.05 -2.39 -0.02 3.56 16 32 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 34 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 35 H 0.10 5.45 6.20 -2.91 -0.02 5.44 16 36 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 Total: -1.00 -69.33 322.44 7.64 -61.69 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.09 Total: 19.95 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 4.09 Total: -34.15 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.61 Total: -53.81 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.18 Total: -33.44 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -69.33 7.64 -61.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.887 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds