Wall clock time and date at job start Mon Mar 30 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34757 * 116.99329 * 179.97438 * 12 11 10 14 14 O 1.21513 * 120.00548 * 359.97438 * 13 12 11 15 15 C 1.47364 * 119.99255 * 179.97438 * 13 12 11 16 16 C 1.41247 * 126.38511 * 359.69010 * 15 13 12 17 17 C 1.37974 * 106.85853 * 179.87307 * 16 15 13 18 18 C 1.41402 * 131.97810 * 180.02562 * 17 16 15 19 19 C 1.35725 * 119.33612 * 180.34049 * 18 17 16 20 20 C 1.40835 * 119.72634 * 0.02562 * 19 18 17 21 21 C 1.34532 * 120.58144 * 359.97438 * 20 19 18 22 22 N 1.37446 * 120.74392 * 0.03545 * 21 20 19 23 23 C 1.35098 * 131.26674 * 179.97438 * 22 21 20 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 26 26 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 28 28 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.07994 * 126.57191 * 359.97438 * 16 15 13 32 32 H 1.08000 * 120.32828 * 0.36377 * 18 17 16 33 33 H 1.08007 * 120.13793 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.70774 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.62633 * 180.02562 * 21 20 19 36 36 H 1.08002 * 125.61664 * 0.03697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9084 -7.3360 -0.0005 14 8 0.7038 -7.4952 -0.0004 15 6 2.8061 -8.5046 -0.0004 16 6 4.2183 -8.4764 -0.0066 17 6 4.6448 -9.7886 -0.0012 18 6 5.9368 -10.3631 -0.0030 19 6 6.0636 -11.7144 -0.0032 20 6 4.9112 -12.5240 -0.0021 21 6 3.6854 -11.9697 -0.0004 22 7 3.5319 -10.6039 -0.0003 23 6 2.4232 -9.8318 0.0008 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 4.8443 -7.5964 -0.0127 32 1 6.8139 -9.7329 -0.0039 33 1 7.0443 -12.1671 -0.0042 34 1 5.0125 -13.5992 -0.0018 35 1 2.8121 -12.6052 0.0009 36 1 1.4053 -10.1929 0.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785995515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:40 Heat of formation + Delta-G solvation = -43.096929 kcal Electronic energy + Delta-G solvation = -19119.439229 eV Core-core repulsion = 15954.575022 eV Total energy + Delta-G solvation = -3164.864208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.25552 -41.21159 -37.92221 -37.28040 -35.92144 -34.14094 -33.64060 -31.26129 -29.04122 -28.76204 -26.12524 -24.75732 -23.65779 -22.75809 -22.15917 -21.17127 -18.89112 -18.61172 -18.04461 -17.70869 -17.65786 -16.82668 -16.48445 -16.44064 -15.98287 -15.54052 -15.34355 -14.89027 -14.41445 -14.01755 -13.84649 -13.79468 -13.48741 -12.92377 -12.79802 -12.52620 -12.45138 -12.37650 -12.25716 -12.06271 -11.86555 -11.49893 -11.46280 -11.40390 -11.25185 -10.56122 -9.73199 -8.39825 -8.20931 -6.32664 -0.28600 0.30074 0.83940 1.36353 1.42210 1.45567 1.53538 1.94946 2.16816 2.42454 2.57092 3.12635 3.55882 3.61806 3.86087 4.00414 4.01341 4.07090 4.13064 4.29047 4.32374 4.42873 4.53878 4.79975 4.81724 4.87053 4.94932 5.07714 5.23158 5.27456 5.38591 5.41929 5.50798 5.58110 5.64139 5.80440 5.84433 6.19684 6.21388 6.71062 6.82943 7.36579 8.91234 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.042757 B = 0.002668 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.702276 B =10491.379463 C =11120.331597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.351 6.351 13 C 0.532 3.468 14 O -0.547 6.547 15 C -0.189 4.189 16 C -0.163 4.163 17 C 0.019 3.981 18 C -0.096 4.096 19 C -0.122 4.122 20 C -0.124 4.124 21 C 0.020 3.980 22 N -0.341 5.341 23 C 0.023 3.977 24 H 0.265 0.735 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.193 0.807 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.333 -29.162 -0.010 32.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.005 3.995 12 O -0.267 6.267 13 C 0.380 3.620 14 O -0.439 6.439 15 C -0.194 4.194 16 C -0.185 4.185 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.096 4.096 22 N -0.004 5.004 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.210 0.790 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.779 -29.315 -0.010 31.979 hybrid contribution -0.493 1.342 0.002 1.430 sum 12.286 -27.973 -0.008 30.552 Atomic orbital electron populations 1.70100 1.07903 1.28011 1.51387 1.26035 0.95820 1.03579 0.94566 0.85420 0.78178 0.77657 0.79306 1.19008 1.20877 1.19018 1.21592 0.93753 0.91842 1.51002 0.91655 1.18929 0.94240 0.92419 0.95487 1.21458 0.98755 0.90250 1.02560 1.23177 0.90969 0.83484 1.01896 1.86539 1.41597 1.14971 1.83642 1.20672 0.86445 0.83316 0.71602 1.90792 1.17311 1.87270 1.48541 1.18597 0.93741 0.90224 1.16876 1.21435 0.92820 0.95998 1.08278 1.19181 0.88472 0.89885 1.11070 1.20997 0.93737 0.96661 1.00038 1.21467 1.00789 0.92672 0.99296 1.21328 0.90154 1.02938 0.99905 1.22416 1.02300 0.80014 1.04870 1.41499 1.06671 1.06639 1.45575 1.22077 0.92010 0.87950 1.09096 0.92660 0.98450 0.98460 0.91460 0.91464 0.91844 0.91828 0.82151 0.82122 0.81642 0.79824 0.79016 0.78372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -4.06 5.53 30.60 0.17 -3.89 16 11 C 0.08 3.16 5.48 71.98 0.39 3.55 16 12 O -0.35 -13.22 10.07 -56.68 -0.57 -13.79 16 13 C 0.53 19.15 7.96 70.22 0.56 19.71 16 14 O -0.55 -22.00 16.69 19.79 0.33 -21.67 16 15 C -0.19 -5.50 6.12 -20.16 -0.12 -5.63 16 16 C -0.16 -4.15 10.81 22.95 0.25 -3.90 16 17 C 0.02 0.39 6.70 38.89 0.26 0.65 16 18 C -0.10 -1.32 10.11 22.47 0.23 -1.09 16 19 C -0.12 -1.04 10.07 22.32 0.22 -0.81 16 20 C -0.12 -0.85 9.97 22.06 0.22 -0.63 16 21 C 0.02 0.22 10.89 82.96 0.90 1.12 16 22 N -0.34 -6.44 2.92 -345.01 -1.01 -7.45 16 23 C 0.02 0.54 11.37 84.17 0.96 1.49 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 34 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 35 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 36 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -74.98 321.61 7.02 -67.96 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.07 Total: 4.53 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.88 Total: -18.77 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.72 Total: -64.98 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.24 Total: -35.46 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.98 7.02 -67.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785995515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.861 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds